Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 1.1e-139 500.0 245 100.0
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 4.8e-108 394.8 252 76.2
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 1.3e-105 386.7 246 74.8
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 7.9e-103 377.5 257 72.8
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.6e-87 326.6 243 66.3
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 4.6e-87 325.1 244 65.6
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 4.8e-84 315.1 245 62.9
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 1.4e-83 313.5 250 62.0
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 9.1e-83 310.8 244 64.3
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 1.2e-82 310.5 232 64.7
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 1.5e-82 310.1 255 61.2
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 3.4e-82 308.9 255 59.6
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.0e-81 307.4 239 64.9
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 1.3e-81 307.0 244 61.9
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 8.5e-81 304.3 253 57.7
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 8.5e-81 304.3 244 63.1
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 7.2e-80 301.2 244 63.1
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 1.2e-79 300.4 252 57.9
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 2.7e-79 299.3 242 60.7
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 1.0e-78 297.4 245 59.2
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 8.8e-78 294.3 232 61.2
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 5.7e-77 291.6 227 62.1
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 7.4e-77 291.2 249 59.0
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 3.7e-76 288.9 237 61.6
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 6.3e-76 288.1 251 54.2
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 1.4e-75 287.0 247 57.1
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.4e-75 286.2 236 59.7
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 9.1e-75 284.3 242 58.3
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 9.1e-75 284.3 238 58.4
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 1.2e-74 283.9 229 62.4
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.6e-74 283.5 238 57.6
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 2.0e-74 283.1 244 58.6
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 5.9e-74 281.6 254 57.9
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 1.0e-73 280.8 230 57.8
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.0e-73 280.8 235 60.4
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 3.8e-73 278.9 242 57.0
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.5e-72 276.9 238 57.1
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 1.5e-72 276.9 237 58.6
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 2.1e-71 273.1 244 52.9
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 6.1e-71 271.6 259 52.1
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 5.2e-70 268.5 247 54.7
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.2e-69 267.3 242 55.4
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 2.0e-69 266.5 235 55.3
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 2.2e-68 263.1 224 57.1
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 2.4e-67 259.6 241 51.5
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 5.3e-67 258.5 223 56.1
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 9.1e-67 257.7 244 52.0
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 9.1e-67 257.7 241 51.9
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 1.6e-66 256.9 251 49.4
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 3.5e-66 255.8 159 76.1
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 5.0e-65 251.9 244 51.2
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 4.2e-64 248.8 233 54.9
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 4.2e-64 248.8 235 54.5
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 1.2e-63 247.3 253 48.2
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 1.6e-63 246.9 233 52.4
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 6.1e-63 245.0 259 47.1
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 1.8e-62 243.4 234 53.0
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 2.3e-62 243.0 233 53.2
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 3.0e-62 242.7 247 48.6
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 3.0e-62 242.7 234 50.0
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 3.0e-62 242.7 240 52.1
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 2.6e-61 239.6 242 50.8
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 7.5e-61 238.0 231 51.9
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 7.5e-61 238.0 239 49.4
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.3e-60 237.3 227 52.9
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 8.3e-60 234.6 228 52.2
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 1.4e-59 233.8 235 48.5
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 4.1e-59 232.3 246 51.6
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 4.5e-58 228.8 233 50.6
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.7e-57 226.9 228 50.9
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 8.6e-57 224.6 239 47.7
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.2e-56 221.5 225 49.3
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 9.5e-56 221.1 227 49.3
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.7e-55 218.8 243 46.5
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 8.0e-55 218.0 243 46.9
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 1.0e-54 217.6 225 49.3
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 1.0e-54 217.6 228 49.6
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 3.0e-54 216.1 244 48.8
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 5.2e-54 215.3 221 48.4
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 8.8e-54 214.5 231 48.5
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 4.4e-53 212.2 233 47.6
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 9.8e-53 211.1 192 54.7
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 6.3e-52 208.4 228 49.1
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 6.3e-52 208.4 228 49.1
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.8e-51 206.8 228 48.7
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 1.8e-51 206.8 228 48.7
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 2.4e-51 206.5 227 48.9
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 3.1e-51 206.1 178 55.6
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.1e-51 205.7 175 56.0
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.0e-50 203.4 233 48.9
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 4.5e-50 202.2 229 48.0
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 7.8e-50 201.4 217 50.7
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 8.6e-49 198.0 225 47.1
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.1e-48 197.6 173 57.8
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 5.6e-48 195.3 167 57.5
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 2.1e-47 193.4 218 47.7
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.7e-47 192.2 228 46.1
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 7.5e-45 184.9 298 35.9
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 3.2e-43 179.5 296 36.1
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.4e-35 153.3 154 50.0
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 1.6e-34 150.6 159 53.5
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 6.0e-34 148.7 255 32.9
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 2.3e-33 146.7 245 38.8
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 4.3e-32 142.5 230 33.0
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 5.2e-30 135.6 149 47.7
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 4.4e-29 132.5 149 47.0
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.4e-27 127.5 86 69.8
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 4.1e-27 125.9 146 43.2
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 1.2e-26 124.4 149 45.0
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 2.7e-26 123.2 96 60.4
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 1.3e-25 120.9 87 64.4
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 5.2e-22 109.0 83 61.4
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 2.2e-20 103.6 349 25.2
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 6.4e-20 102.1 122 43.4
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 7.1e-19 98.6 63 73.0
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 3.5e-18 96.3 111 48.6
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 3.5e-18 96.3 67 68.7
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 4.6e-18 95.9 69 62.3
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 1.3e-17 94.4 146 41.1
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 1.9e-16 90.5 79 53.2
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 9.6e-16 88.2 83 48.2
SalBow1G6319 Salvia bowleyana HOM05D006775 ORTHO05D008344 2.1e-10 70.5 51 68.6


User provided reference genes

Program Settings