Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold57G20200 Striga asiatica HOM05D001044 ORTHO05D007204 2.6e-80 302.0 152 100.0
SGA_v2.0_scaffold40G15656 Striga asiatica HOM05D001044 ORTHO05D007204 3.2e-46 188.7 175 66.3
MSTRG.22867 Avicennia marina HOM05D001044 ORTHO05D007204 5.3e-41 171.4 165 61.2
Dinv38289 Davidia involucrata HOM05D001044 ORTHO05D007204 9.1e-41 170.6 165 61.8
Migut.I00572 Erythranthe guttata HOM05D001044 ORTHO05D007204 7.7e-40 167.5 176 59.1
Manes.03G154600 Manihot esculenta HOM05D001044 ORTHO05D007204 2.2e-39 166.0 170 60.0
Nitab4.5_0006812g0050 Nicotiana tabacum HOM05D001044 ORTHO05D007204 6.5e-39 164.5 166 59.6
GSVIVG01029035001 Vitis vinifera HOM05D001044 ORTHO05D007204 1.1e-38 163.7 170 59.4
Eucgr.H02871 Eucalyptus grandis HOM05D001044 ORTHO05D007204 7.2e-38 161.0 176 56.8
QL06p022880 Quercus lobata HOM05D001044 ORTHO05D007204 7.2e-38 161.0 170 57.6
Rhsim02G0052200 Rhododendron simsii HOM05D001044 ORTHO05D007204 9.4e-38 160.6 165 59.4
CsaV3_3G011360 Cucumis sativus L. HOM05D001044 ORTHO05D007204 1.2e-37 160.2 170 58.2
Lsat_1_v5_gn_2_41161 Lactuca sativa HOM05D001044 ORTHO05D007204 1.2e-37 160.2 166 59.0
ClCG05G003650 Citrullus lanatus HOM05D001044 ORTHO05D007204 1.6e-37 159.8 170 58.2
Gohir.D02G035500 Gossypium hirsutum HOM05D001044 ORTHO05D007204 2.1e-37 159.5 170 59.4
Nitab4.5_0002182g0060 Nicotiana tabacum HOM05D001044 ORTHO05D007204 2.1e-37 159.5 170 57.6
Peaxi162Scf00047g01526 Petunia axillaris HOM05D001044 ORTHO05D007204 2.1e-37 159.5 170 57.1
Potri.001G053600 Populus trichocarpa HOM05D001044 ORTHO05D007204 2.1e-37 159.5 170 58.8
Potri.003G174600 Populus trichocarpa HOM05D001044 ORTHO05D007204 2.1e-37 159.5 166 57.8
Oeu023528.2 Olea europaea HOM05D001044 ORTHO05D007204 2.7e-37 159.1 165 59.4
Sabra03G0128100 Salix brachista HOM05D001044 ORTHO05D007204 2.7e-37 159.1 167 58.7
Sed0025176 Sechium edule HOM05D001044 ORTHO05D007204 2.7e-37 159.1 170 57.6
CANSAT78G1342 Cannabis sativa HOM05D001044 ORTHO05D007204 3.6e-37 158.7 170 55.3
Gohir.A02G027600 Gossypium hirsutum HOM05D001044 ORTHO05D007204 3.6e-37 158.7 170 58.8
EL10Ac3g06775 Beta vulgaris HOM05D001044 ORTHO05D007204 4.7e-37 158.3 156 61.5
Gorai.005G039200 Gossypium raimondii HOM05D001044 ORTHO05D007204 4.7e-37 158.3 170 58.8
CAN.G1588.10 Capsicum annuum HOM05D001044 ORTHO05D007204 6.1e-37 157.9 170 57.1
Cpa.g.sc59.78 Carica papaya HOM05D001044 ORTHO05D007204 6.1e-37 157.9 170 57.6
Prupe.1G057500 Prunus persica HOM05D001044 ORTHO05D007204 6.1e-37 157.9 169 58.0
Cc03_g07100 Coffea canephora HOM05D001044 ORTHO05D007204 8.0e-37 157.5 170 57.1
Sc13g0002900 Simmondsia chinensis HOM05D001044 ORTHO05D007204 8.0e-37 157.5 170 55.9
Solyc09g091240.4 Solanum lycopersicum HOM05D001044 ORTHO05D007204 8.0e-37 157.5 170 57.1
Sopen09g034210 Solanum pennellii HOM05D001044 ORTHO05D007204 8.0e-37 157.5 170 57.1
Aqoxy2G03830 Aquilegia oxysepala HOM05D001044 ORTHO05D007204 1.0e-36 157.1 170 57.6
MELO3C006344.2 Cucumis melo HOM05D001044 ORTHO05D007204 1.0e-36 157.1 170 57.6
Duzib151G0345 Durio zibethinus HOM05D001044 ORTHO05D007204 1.0e-36 157.1 170 57.6
HanXRQChr14g0434281 Helianthus annuus HOM05D001044 ORTHO05D007204 1.4e-36 156.8 166 58.4
CSS0000631 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D007204 1.8e-36 156.4 165 59.4
Nn1g03092 Nelumbo nucifera HOM05D001044 ORTHO05D007204 1.8e-36 156.4 165 58.2
PGSC0003DMG400011590 Solanum tuberosum HOM05D001044 ORTHO05D007204 1.8e-36 156.4 170 56.5
MD13G1229400 Malus domestica HOM05D001044 ORTHO05D007204 3.0e-36 155.6 165 57.6
RcHm_v2.0_Chr4g0396661 Rosa chinensis HOM05D001044 ORTHO05D007204 4.0e-36 155.2 165 55.8
Sed0015881 Sechium edule HOM05D001044 ORTHO05D007204 4.0e-36 155.2 157 60.5
Cfa014870 Carpinus fangiana HOM05D001044 ORTHO05D007204 5.2e-36 154.8 170 56.5
FAN17G1947 Fragaria x ananassa HOM05D001044 ORTHO05D007204 5.2e-36 154.8 170 55.3
FAN22G1298 Fragaria x ananassa HOM05D001044 ORTHO05D007204 5.2e-36 154.8 170 55.3
vmacro15499 Vaccinium macrocarpon HOM05D001044 ORTHO05D007204 5.2e-36 154.8 152 61.2
Ca_11819_v3 Cicer arietinum L. HOM05D001044 ORTHO05D007204 6.7e-36 154.5 176 55.7
Ciclev10005326m.g Citrus clementina HOM05D001044 ORTHO05D007204 6.7e-36 154.5 170 55.3
FvH4_4g05550 Fragaria vesca HOM05D001044 ORTHO05D007204 6.7e-36 154.5 170 55.3
FAN12G1460 Fragaria x ananassa HOM05D001044 ORTHO05D007204 6.7e-36 154.5 170 55.3
Sp7g11240 Schrenkiella parvula HOM05D001044 ORTHO05D007204 8.8e-36 154.1 170 55.9
arahy.Tifrunner.gnm1.ann1.39LB0I Arachis hypogaea HOM05D001044 ORTHO05D007204 1.2e-35 153.7 176 56.2
Thhalv10025564m.g Eutrema salsugineum HOM05D001044 ORTHO05D007204 1.2e-35 153.7 170 55.9
Lj6g0004400 Lotus japonicus HOM05D001044 ORTHO05D007204 1.2e-35 153.7 170 56.5
VMungo0720G0833 Vigna mungo HOM05D001044 ORTHO05D007204 1.2e-35 153.7 176 55.1
Atru.chr4.1812 Acer truncatum HOM05D001044 ORTHO05D007204 1.5e-35 153.3 176 55.1
Phvul.007G237700 Phaseolus vulgaris HOM05D001044 ORTHO05D007204 1.5e-35 153.3 176 55.1
TAR362G1143 Trochodendron aralioides HOM05D001044 ORTHO05D007204 1.5e-35 153.3 171 58.5
DCAR_002280 Daucus carota HOM05D001044 ORTHO05D007204 2.0e-35 152.9 157 59.9
Thecc.04G214400 Theobroma cacao HOM05D001044 ORTHO05D007204 2.0e-35 152.9 165 56.4
Haze_11544 Corylus avellana HOM05D001044 ORTHO05D007204 2.6e-35 152.5 157 59.2
arahy.Tifrunner.gnm1.ann1.9AB2IG Arachis hypogaea HOM05D001044 ORTHO05D007204 3.3e-35 152.1 176 56.2
AUR62006283 Chenopodium quinoa HOM05D001044 ORTHO05D007204 3.3e-35 152.1 168 56.0
AUR62019635 Chenopodium quinoa HOM05D001044 ORTHO05D007204 3.3e-35 152.1 168 56.0
Lalb_Chr01g0011121 Lupinus albus HOM05D001044 ORTHO05D007204 4.4e-35 151.8 170 56.5
Psat6g047320 Pisum sativum HOM05D001044 ORTHO05D007204 4.4e-35 151.8 167 56.9
PGR142G4335 Punica granatum HOM05D001044 ORTHO05D007204 5.7e-35 151.4 176 55.1
Lju414A4T45 Lonicera japonica HOM05D001044 ORTHO05D007204 9.7e-35 150.6 170 57.1
BcaB04g17671 Brassica carinata HOM05D001044 ORTHO05D007204 1.3e-34 150.2 170 54.7
A08p06770 Brassica napus HOM05D001044 ORTHO05D007204 1.3e-34 150.2 170 54.7
BraA08t32695Z Brassica rapa HOM05D001044 ORTHO05D007204 1.3e-34 150.2 170 54.7
THA.LOC104808731 Tarenaya hassleriana HOM05D001044 ORTHO05D007204 1.7e-34 149.8 165 53.3
CiPaw.01G205300 Carya illinoinensis HOM05D001044 ORTHO05D007204 2.2e-34 149.4 176 51.7
Glyma.10G127000 Glycine max HOM05D001044 ORTHO05D007204 2.2e-34 149.4 170 56.5
BcaC07g37347 Brassica carinata HOM05D001044 ORTHO05D007204 2.8e-34 149.1 170 54.7
C08p07910 Brassica napus HOM05D001044 ORTHO05D007204 2.8e-34 149.1 170 54.7
BolC8t47642H Brassica oleracea HOM05D001044 ORTHO05D007204 2.8e-34 149.1 170 54.7
AL7G43000 Arabidopsis lyrata HOM05D001044 ORTHO05D007204 3.7e-34 148.7 165 53.9
Manes.15G049500 Manihot esculenta HOM05D001044 ORTHO05D007204 3.7e-34 148.7 161 54.0
Medtr1g046730 Medicago truncatula HOM05D001044 ORTHO05D007204 3.7e-34 148.7 170 55.3
AT4G13590 Arabidopsis thaliana HOM05D001044 ORTHO05D007204 4.8e-34 148.3 165 53.9
MD16G1235100 Malus domestica HOM05D001044 ORTHO05D007204 6.3e-34 147.9 164 55.5
Carub.0007s2895 Capsella rubella HOM05D001044 ORTHO05D007204 1.4e-33 146.7 170 54.1
CARHR219230 Cardamine hirsuta HOM05D001044 ORTHO05D007204 1.4e-33 146.7 165 53.3
COL.COLO4_05721 Corchorus olitorius HOM05D001044 ORTHO05D007204 1.4e-33 146.7 157 58.6
TWI09G0323 Tripterygium wilfordii HOM05D001044 ORTHO05D007204 2.4e-33 146.0 173 55.5
Lalb_Chr19g0128661 Lupinus albus HOM05D001044 ORTHO05D007204 7.0e-33 144.4 170 53.5
Aa31LG9G4070 Aethionema arabicum HOM05D001044 ORTHO05D007204 1.6e-32 143.3 165 53.3
CDE01G0490 Ceratophyllum demersum HOM05D001044 ORTHO05D007204 2.7e-32 142.5 170 54.7
unitig_62.g23813 Utricularia gibba HOM05D001044 ORTHO05D007204 4.5e-32 141.7 181 50.8
MBI07_g08929_MAGBIO Magnolia biondii HOM05D001044 ORTHO05D007204 1.0e-31 140.6 170 52.9
Actinidia39947 Actinidia chinensis HOM05D001044 ORTHO05D007204 3.8e-31 138.7 166 52.4
PSO063G3895 Papaver somniferum HOM05D001044 ORTHO05D007204 5.0e-31 138.3 137 61.3
Os11g0544500 Oryza sativa ssp. japonica HOM05D001044 ORTHO05D007204 2.5e-30 136.0 171 52.6
ATR0787G194 Amborella trichopoda HOM05D001044 ORTHO05D007204 7.2e-30 134.4 147 55.8
Zm00001eb088390 Zea mays HOM05D001044 ORTHO05D007204 1.6e-29 133.3 166 53.0
PSO017G6432 Papaver somniferum HOM05D001044 ORTHO05D007204 2.1e-29 132.9 151 55.6
Pp3c9_26170 Physcomitrium patens HOM05D001044 ORTHO05D007204 8.8e-28 127.5 164 48.2
Oeu027118.1 Olea europaea HOM05D001044 ORTHO05D007204 4.4e-27 125.2 81 81.5
Mapoly0091s0019 Marchantia polymorpha HOM05D001044 ORTHO05D007204 2.2e-26 122.9 164 45.1
Psat6g127160 Pisum sativum HOM05D001044 ORTHO05D007204 1.8e-25 119.8 82 76.8
CBR_g12688 Chara braunii HOM05D001044 ORTHO05D007204 2.2e-23 112.8 183 41.5
AagrBONN_evm.TU.Sc2ySwM_228.670 Anthoceros agrestis HOM05D001044 ORTHO05D007204 5.0e-23 111.7 164 43.3
FAN07G1012 Fragaria x ananassa HOM05D001044 ORTHO05D007204 5.0e-23 111.7 144 49.3
AUR62019634 Chenopodium quinoa HOM05D001044 ORTHO05D007204 6.8e-20 101.3 135 45.9
HPP92_008897 Vanilla planifolia HOM05D001044 ORTHO05D007204 1.6e-16 90.1 149 44.3
MCO02G237 Micromonas commoda HOM05D001044 ORTHO05D007204 2.9e-15 85.9 165 37.0
Cre16.g660000 Chlamydomonas reinhardtii HOM05D001044 ORTHO05D007204 4.3e-14 82.0 175 32.0
Hund19257 Selenicereus undatus HOM05D001044 ORTHO05D007204 1.4e-12 77.0 140 40.0
GSVIVG01027223001 Vitis vinifera HOM05D001044 ORTHO05D007204 3.0e-12 75.9 60 66.7
SEGI_25262 Sequoiadendron giganteum HOM05D001044 ORTHO05D007204 1.4e-09 67.0 57 63.2
TPR.G11301 Trifolium pratense HOM05D001044 ORTHO05D007204 1.8e-09 66.6 157 36.9
Cre02.g084350 Chlamydomonas reinhardtii HOM05D001044 ORTHO05D008486 2.4e-09 66.2 160 29.4
Ciclev10020858m.g Citrus clementina HOM05D001044 ORTHO05D008486 9.2e-09 64.3 176 32.4
Actinidia11388 Actinidia chinensis HOM05D001044 ORTHO05D007204 1.6e-08 63.5 127 40.9
AUR62035315 Chenopodium quinoa HOM05D001044 ORTHO05D007204 1.6e-08 63.5 151 35.8
PRCOL_00005490 Prasinoderma coloniale HOM05D001044 ORTHO05D007204 2.0e-08 63.2 175 30.9
Carub.0002s0066 Capsella rubella HOM05D001044 ORTHO05D008486 2.7e-08 62.8 176 30.1
Pp3c2_28570 Physcomitrium patens HOM05D001044 ORTHO05D008486 3.5e-08 62.4 168 29.2
Migut.E01805 Erythranthe guttata HOM05D001044 ORTHO05D008486 7.8e-08 61.2 172 32.6
Sabra03G0096700 Salix brachista HOM05D001044 ORTHO05D008486 7.8e-08 61.2 176 30.7
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 7.8e-08 61.2 176 30.7
ATR0636G002 Amborella trichopoda HOM05D001044 ORTHO05D008486 1.0e-07 60.8 167 31.7
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 1.0e-07 60.8 176 30.7
Medtr5g009810 Medicago truncatula HOM05D001044 ORTHO05D008486 1.0e-07 60.8 176 30.1
CARHR046790 Cardamine hirsuta HOM05D001044 ORTHO05D008486 1.3e-07 60.5 176 30.1
Prupe.5G110800 Prunus persica HOM05D001044 ORTHO05D008486 1.3e-07 60.5 176 31.2
BcaC04g22536 Brassica carinata HOM05D001044 ORTHO05D008486 1.7e-07 60.1 176 30.7
C09p18060 Brassica napus HOM05D001044 ORTHO05D008486 1.7e-07 60.1 176 30.7
BolC9t54703H Brassica oleracea HOM05D001044 ORTHO05D008486 1.7e-07 60.1 176 30.7
A09p14940 Brassica napus HOM05D001044 ORTHO05D008486 2.3e-07 59.7 176 30.7
BraA09t37139Z Brassica rapa HOM05D001044 ORTHO05D008486 2.3e-07 59.7 176 30.7
Cpa.g.sc321.3 Carica papaya HOM05D001044 ORTHO05D008486 3.0e-07 59.3 163 33.7
CiPaw.11G126800 Carya illinoinensis HOM05D001044 ORTHO05D008486 3.0e-07 59.3 176 30.7
COL.COLO4_08333 Corchorus olitorius HOM05D001044 ORTHO05D008486 3.0e-07 59.3 176 31.8
Glyma.01G223500 Glycine max HOM05D001044 ORTHO05D008486 3.0e-07 59.3 176 30.1
MD06G1096200 Malus domestica HOM05D001044 ORTHO05D008486 3.0e-07 59.3 176 31.8
Sp2g00580 Schrenkiella parvula HOM05D001044 ORTHO05D008486 3.0e-07 59.3 176 29.0
HanXRQChr17g0533941 Helianthus annuus HOM05D001044 ORTHO05D008486 3.9e-07 58.9 178 30.3
Psat2g184200 Pisum sativum HOM05D001044 ORTHO05D008486 3.9e-07 58.9 176 30.1
Potri.003G134300 Populus trichocarpa HOM05D001044 ORTHO05D008486 3.9e-07 58.9 176 30.1
ATR0709G023 Amborella trichopoda HOM05D001044 ORTHO05D008486 5.0e-07 58.5 163 32.5
AL2G10880 Arabidopsis lyrata HOM05D001044 ORTHO05D008486 5.0e-07 58.5 176 29.5
AT1G64150 Arabidopsis thaliana HOM05D001044 ORTHO05D008486 5.0e-07 58.5 176 30.1
GSVIVG01019449001 Vitis vinifera HOM05D001044 ORTHO05D008486 5.0e-07 58.5 176 31.8
arahy.Tifrunner.gnm1.ann1.U47N90 Arachis hypogaea HOM05D001044 ORTHO05D008486 6.6e-07 58.2 176 29.5
SGA_v2.0_scaffold163G37966 Striga asiatica HOM05D001044 ORTHO05D008486 6.6e-07 58.2 178 32.0
Thecc.03G289400 Theobroma cacao HOM05D001044 ORTHO05D008486 6.6e-07 58.2 176 31.8
unitig_578.g16562 Utricularia gibba HOM05D001278 ORTHO05D001104 6.6e-07 58.2 176 29.5
CANSAT35G0786 Cannabis sativa HOM05D001044 ORTHO05D008486 8.6e-07 57.8 171 29.2
Cfa012268 Carpinus fangiana HOM05D001044 ORTHO05D008486 8.6e-07 57.8 176 31.2
Mapoly0032s0011 Marchantia polymorpha HOM05D001044 ORTHO05D008486 8.6e-07 57.8 168 30.4
Peaxi162Scf00074g01514 Petunia axillaris HOM05D001044 ORTHO05D008486 8.6e-07 57.8 176 31.2
Sed0026915 Sechium edule HOM05D001044 ORTHO05D008486 1.1e-06 57.4 176 30.7
Eucgr.D01791 Eucalyptus grandis HOM05D001044 ORTHO05D008486 1.5e-06 57.0 176 29.0
Gohir.A12G232500 Gossypium hirsutum HOM05D001044 ORTHO05D008486 1.5e-06 57.0 176 30.1
Gorai.008G251200 Gossypium raimondii HOM05D001044 ORTHO05D008486 1.5e-06 57.0 176 30.1
Lsat_1_v5_gn_3_9840 Lactuca sativa HOM05D001044 ORTHO05D008486 1.5e-06 57.0 176 30.1
LjContig00312_ERROPOS870357g0011954 Lotus japonicus HOM05D001044 ORTHO05D008486 1.5e-06 57.0 176 30.1
Gohir.D12G234900 Gossypium hirsutum HOM05D001044 ORTHO05D008486 1.9e-06 56.6 176 30.1
Phvul.002G161500 Phaseolus vulgaris HOM05D001044 ORTHO05D008486 1.9e-06 56.6 176 31.8
RcHm_v2.0_Chr7g0196061 Rosa chinensis HOM05D001044 ORTHO05D008486 1.9e-06 56.6 175 30.3
TWI60G0564 Tripterygium wilfordii HOM05D001044 ORTHO05D008486 1.9e-06 56.6 176 31.2
Dinv38884 Davidia involucrata HOM05D001044 ORTHO05D008486 2.5e-06 56.2 176 29.0
Duzib205G1268 Durio zibethinus HOM05D001044 ORTHO05D008486 2.5e-06 56.2 176 30.1
Lj2A175T71 Lonicera japonica HOM05D001044 ORTHO05D008486 2.5e-06 56.2 172 32.6
MD13G1229200 Malus domestica HOM05D001044 ORTHO05D007204 2.5e-06 56.2 99 43.4
Manes.02G014750 Manihot esculenta HOM05D001044 ORTHO05D008486 2.5e-06 56.2 163 31.3
Atru.chr9.2079 Acer truncatum HOM05D001044 ORTHO05D008486 3.3e-06 55.8 176 31.2
FvH4_5g03670 Fragaria vesca HOM05D001044 ORTHO05D008486 3.3e-06 55.8 175 29.7
Os01g0221700 Oryza sativa ssp. japonica HOM05D001044 ORTHO05D008486 3.3e-06 55.8 163 29.4
PSO170G5857 Papaver somniferum HOM05D001044 ORTHO05D008486 3.3e-06 55.8 176 30.1
Sc01g0009990 Simmondsia chinensis HOM05D001044 ORTHO05D008486 3.3e-06 55.8 176 30.1
arahy.Tifrunner.gnm1.ann1.FZ52LJ Arachis hypogaea HOM05D001044 ORTHO05D008486 4.3e-06 55.5 163 30.7
AUR62019777 Chenopodium quinoa HOM05D001044 ORTHO05D008486 4.3e-06 55.5 176 29.0
PSO063G4777 Papaver somniferum HOM05D001044 ORTHO05D008486 4.3e-06 55.5 176 29.5
QL02p032522 Quercus lobata HOM05D001044 ORTHO05D008486 4.3e-06 55.5 176 29.5
CSS0027074 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D008486 5.6e-06 55.1 176 31.2
HPP92_008794 Vanilla planifolia HOM05D001044 ORTHO05D008486 5.6e-06 55.1 176 29.5
vmacro11419 Vaccinium macrocarpon HOM05D001044 ORTHO05D008486 7.3e-06 54.7 176 30.7
EL10Ac5g12855 Beta vulgaris HOM05D001044 ORTHO05D008486 9.5e-06 54.3 163 30.7
Lalb_Chr09g0320731 Lupinus albus HOM05D001044 ORTHO05D008486 9.5e-06 54.3 176 30.7
Pp3c7_26970 Physcomitrium patens HOM05D001044 ORTHO05D008486 9.5e-06 54.3 178 28.7


User provided reference genes

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