Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.1e-300 1035.8 513 100.0
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 9.6e-244 846.7 495 85.1
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.8e-218 762.7 499 76.6
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.0e-217 759.2 499 76.4
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.3e-213 745.7 498 74.9
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.0e-197 693.7 510 67.8
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 8.3e-195 684.1 512 67.8
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 5.4e-194 681.4 506 67.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 3.5e-193 678.7 498 68.1
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 5.9e-193 677.9 504 67.7
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.0e-192 677.2 510 65.9
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.7e-192 676.4 505 67.5
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.1e-191 673.7 500 67.8
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.9e-191 672.9 500 67.8
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.9e-191 672.9 560 63.2
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.8e-189 666.4 510 66.1
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.3e-189 666.0 503 67.2
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 8.8e-189 664.1 512 64.5
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 2.0e-188 662.9 510 65.7
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.6e-188 662.5 510 65.9
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 4.4e-188 661.8 503 67.0
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.3e-187 660.2 507 65.9
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 2.8e-187 659.1 512 66.0
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 3.7e-187 658.7 504 66.1
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 4.9e-187 658.3 506 65.8
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 6.3e-187 657.9 510 65.5
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 8.3e-187 657.5 504 66.1
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 8.3e-187 657.5 516 66.3
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.8e-186 656.4 504 65.5
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.4e-186 656.0 495 66.5
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.0e-186 654.4 504 65.5
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.0e-185 652.9 510 66.3
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.7e-185 652.5 502 67.1
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 3.5e-185 652.1 504 65.1
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.0e-184 650.6 534 62.5
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.3e-184 650.2 504 65.1
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.3e-184 650.2 507 65.3
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 5.0e-184 648.3 513 64.5
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 6.6e-184 647.9 499 66.1
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 6.6e-184 647.9 504 65.5
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.1e-183 647.1 509 65.4
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.5e-183 646.0 512 64.3
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 7.2e-183 644.4 510 65.9
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 7.2e-183 644.4 496 65.7
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 7.2e-183 644.4 504 65.5
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 9.5e-183 644.0 506 63.2
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.2e-182 643.7 503 65.0
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.6e-182 643.3 510 65.1
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 2.1e-182 642.9 510 64.3
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 8.0e-182 641.0 511 64.4
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.8e-181 639.8 517 64.4
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 3.0e-181 639.0 503 64.4
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 4.0e-181 638.6 504 63.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 6.8e-181 637.9 502 66.3
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 8.9e-181 637.5 459 69.9
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 8.9e-181 637.5 509 63.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 2.6e-180 636.0 507 64.3
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.4e-180 635.6 510 62.4
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.4e-180 635.2 512 64.5
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 5.7e-180 634.8 511 63.6
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.8e-180 634.0 506 64.0
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.3e-179 633.6 504 63.3
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.3e-179 633.6 444 69.6
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.2e-179 632.9 572 58.6
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 3.7e-179 632.1 507 63.5
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 4.9e-179 631.7 508 63.4
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 4.9e-179 631.7 523 62.0
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.1e-178 630.6 494 64.2
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.1e-178 630.6 494 64.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.4e-178 629.4 510 63.5
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 2.4e-178 629.4 517 63.4
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 9.2e-178 627.5 497 63.8
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 3.5e-177 625.5 508 63.0
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 7.8e-177 624.4 513 62.6
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.0e-176 624.0 513 62.6
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.3e-176 623.6 513 62.4
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.3e-176 623.6 457 68.1
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.1e-175 620.5 508 62.4
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 1.1e-175 620.5 515 62.1
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.1e-175 620.5 515 62.1
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.1e-175 620.5 515 62.1
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 4.7e-174 615.1 436 70.6
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 3.1e-173 612.5 498 63.3
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 2.0e-172 609.8 463 65.2
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 3.4e-172 609.0 495 63.0
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 4.4e-172 608.6 497 62.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.7e-171 606.7 431 70.8
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 6.4e-171 604.7 432 70.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.2e-170 602.4 515 61.0
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 3.5e-169 599.0 547 57.6
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.3e-168 597.0 497 61.2
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.9e-168 595.5 497 61.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 5.0e-168 595.1 480 61.2
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 8.6e-168 594.3 515 60.2
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-167 593.2 438 68.3
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.4e-164 582.0 499 62.1
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 4.9e-163 578.6 545 57.8
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.6e-161 573.5 501 62.1
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.2e-156 557.4 412 68.0
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.5e-156 557.0 500 57.0
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 4.9e-155 552.0 466 60.3
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.9e-154 550.1 447 63.8
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 6.8e-149 531.6 458 59.6
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 5.3e-141 505.4 355 72.1
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.6e-140 503.1 468 55.1
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-138 497.3 370 68.4
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.3e-136 490.7 377 65.8
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.5e-135 487.3 510 52.2
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-132 476.5 414 61.1
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.8e-131 472.6 446 57.2
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.5e-119 434.1 383 59.8
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 4.2e-114 416.0 532 43.0
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 2.1e-113 413.7 446 49.8
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.4e-111 405.2 349 58.7
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 3.1e-109 399.8 430 49.3
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.8e-102 375.9 510 43.9
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 2.9e-99 366.7 390 54.1
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.5e-90 337.0 278 62.2
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 7.2e-90 335.5 326 57.4
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 7.0e-77 292.4 412 45.1
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.6e-73 281.2 454 37.7
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.4e-69 268.1 461 35.1
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.0e-64 250.4 243 56.0
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.8e-61 241.1 444 37.2
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 3.0e-59 233.8 360 37.8
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 9.8e-55 218.8 214 52.8
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.3e-51 207.6 165 67.3
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.1e-50 205.3 453 31.8
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 6.4e-38 162.9 207 44.0
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 8.6e-35 152.5 102 71.6
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.1e-33 147.9 243 36.2
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 6.2e-33 146.4 92 76.1
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.6e-25 120.6 329 27.4
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.6e-23 114.4 133 45.1
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.6e-17 95.1 107 45.8
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 3.8e-14 84.0 60 65.0
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.2e-13 80.9 44 79.5
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 6.0e-12 76.6 49 77.6
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-10 71.2 66 63.6
Sc01g0008120 Simmondsia chinensis HOM05D000686 ORTHO05D000512 1.7e-06 58.5 390 23.3
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.9e-06 57.8 220 28.2


User provided reference genes

Program Settings