Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold56G20083 Striga asiatica HOM05D000036 ORTHO05D402881 2.4e-142 508.8 264 100.0
Migut.I00084 Erythranthe guttata HOM05D000036 ORTHO05D025316 7.2e-09 65.5 138 34.1
Glyma.10G017200 Glycine max HOM05D000036 ORTHO05D001038 6.1e-08 62.4 91 38.5
arahy.Tifrunner.gnm1.ann1.35IWU0 Arachis hypogaea HOM05D000036 ORTHO05D001038 1.0e-07 61.6 91 38.5
arahy.Tifrunner.gnm1.ann1.LY2JWZ Arachis hypogaea HOM05D000036 ORTHO05D001038 1.0e-07 61.6 91 38.5
Phvul.001G209100 Phaseolus vulgaris HOM05D000036 ORTHO05D001038 1.0e-07 61.6 91 36.3
Phvul.007G246700 Phaseolus vulgaris HOM05D000036 ORTHO05D001038 1.3e-07 61.2 91 37.4
VMungo0720G0072 Vigna mungo HOM05D000036 ORTHO05D001038 1.3e-07 61.2 91 36.3
VMungo1383G1769 Vigna mungo HOM05D000036 ORTHO05D001038 1.3e-07 61.2 91 37.4
Migut.I00310 Erythranthe guttata HOM05D000036 ORTHO05D025316 1.8e-07 60.8 94 42.6
Glyma.02G016600 Glycine max HOM05D000036 ORTHO05D001038 1.8e-07 60.8 91 37.4
CSS0010795 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D001038 2.3e-07 60.5 82 39.0
DCAR_020914 Daucus carota HOM05D000036 ORTHO05D001038 2.3e-07 60.5 82 39.0
Nitab4.5_0003925g0020 Nicotiana tabacum HOM05D000036 ORTHO05D001038 2.3e-07 60.5 82 39.0
HanXRQChr10g0284901 Helianthus annuus HOM05D000036 ORTHO05D000095 3.0e-07 60.1 79 44.3
HPP92_011856 Vanilla planifolia HOM05D000036 ORTHO05D001038 3.0e-07 60.1 84 39.3
Nitab4.5_0003102g0020 Nicotiana tabacum HOM05D000036 ORTHO05D001038 3.9e-07 59.7 82 37.8
CSS0002607 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D001038 5.1e-07 59.3 91 35.2
CSS0031877 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D001038 5.1e-07 59.3 91 35.2
Migut.I00081 Erythranthe guttata HOM05D000036 ORTHO05D025316 5.1e-07 59.3 207 31.4
Potri.002G202600 Populus trichocarpa HOM05D000036 ORTHO05D001038 5.1e-07 59.3 91 35.2
QL09p017500 Quercus lobata HOM05D000036 ORTHO05D001038 5.1e-07 59.3 82 40.2
QL09p017513 Quercus lobata HOM05D000036 ORTHO05D001038 5.1e-07 59.3 82 40.2
CSS0040128 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D001038 6.7e-07 58.9 82 39.0
Glyma.03G215800 Glycine max HOM05D000036 ORTHO05D001038 6.7e-07 58.9 91 36.3
QL11p025681 Quercus lobata HOM05D000036 ORTHO05D001038 6.7e-07 58.9 82 39.0
QL12p028077 Quercus lobata HOM05D000036 ORTHO05D001038 6.7e-07 58.9 91 36.3
TPR.G9600 Trifolium pratense HOM05D000036 ORTHO05D001038 6.7e-07 58.9 91 37.4
Ah.14g084650 Amaranthus hybridus HOM05D000036 ORTHO05D000095 8.7e-07 58.5 92 37.0
CSS0002554 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D001038 8.7e-07 58.5 82 39.0
Glyma.19G212300 Glycine max HOM05D000036 ORTHO05D001038 8.7e-07 58.5 91 35.2
Lalb_Chr21g0310501 Lupinus albus HOM05D000036 ORTHO05D001038 8.7e-07 58.5 82 39.0
RcHm_v2.0_Chr7g0237051 Rosa chinensis HOM05D000036 ORTHO05D001038 8.7e-07 58.5 82 39.0
Atru.chr5.1111 Acer truncatum HOM05D000036 ORTHO05D001038 1.1e-06 58.2 82 36.6
CSS0033522 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D001038 1.1e-06 58.2 82 37.8
AUR62028333 Chenopodium quinoa HOM05D000036 ORTHO05D000095 1.1e-06 58.2 92 37.0
Duzib138G1082 Durio zibethinus HOM05D000036 ORTHO05D001038 1.1e-06 58.2 91 39.6
FvH4_5g35590 Fragaria vesca HOM05D000036 ORTHO05D001038 1.1e-06 58.2 82 39.0
FAN08G3315 Fragaria x ananassa HOM05D000036 ORTHO05D001038 1.1e-06 58.2 82 39.0
FAN13G0089 Fragaria x ananassa HOM05D000036 ORTHO05D001038 1.1e-06 58.2 82 39.0
FAN18G2718 Fragaria x ananassa HOM05D000036 ORTHO05D001038 1.1e-06 58.2 82 39.0
Medtr7g108875 Medicago truncatula HOM05D000036 ORTHO05D001038 1.1e-06 58.2 91 37.4
ClCG09G005510 Citrullus lanatus HOM05D000036 ORTHO05D001038 1.5e-06 57.8 82 37.8
Lj1g0013873 Lotus japonicus HOM05D000036 ORTHO05D001038 1.5e-06 57.8 91 34.1
Lalb_Chr06g0166531 Lupinus albus HOM05D000036 ORTHO05D001038 1.5e-06 57.8 82 37.8
Aqoxy6G00852 Aquilegia oxysepala HOM05D000036 ORTHO05D001038 1.9e-06 57.4 82 36.6
arahy.Tifrunner.gnm1.ann1.6E3YUI Arachis hypogaea HOM05D000036 ORTHO05D001038 1.9e-06 57.4 82 35.4
arahy.Tifrunner.gnm1.ann1.BXIN2T Arachis hypogaea HOM05D000036 ORTHO05D001038 1.9e-06 57.4 82 35.4
CSS0005610 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D001038 1.9e-06 57.4 82 36.6
CSS0024327 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D001038 1.9e-06 57.4 82 36.6
CSS0030098 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D001038 1.9e-06 57.4 82 40.2
Ca_09186_v3 Cicer arietinum L. HOM05D000036 ORTHO05D001038 1.9e-06 57.4 91 36.3
Cc02_g34380 Coffea canephora HOM05D000036 ORTHO05D001038 1.9e-06 57.4 81 39.5
MELO3C020953.2 Cucumis melo HOM05D000036 ORTHO05D001038 1.9e-06 57.4 82 42.7
ECA247G0533 Erigeron canadensis HOM05D000036 ORTHO05D001038 1.9e-06 57.4 116 31.0
Gohir.A11G269700 Gossypium hirsutum HOM05D000036 ORTHO05D001038 1.9e-06 57.4 82 39.0
Oeu008354.1 Olea europaea HOM05D000036 ORTHO05D001038 1.9e-06 57.4 82 37.8
Sabra02G0156500 Salix brachista HOM05D000036 ORTHO05D001038 1.9e-06 57.4 91 34.1
GSVIVG01015019001 Vitis vinifera HOM05D000036 ORTHO05D011952 1.9e-06 57.4 97 33.0
CiPaw.07G110900 Carya illinoinensis HOM05D000036 ORTHO05D001038 2.5e-06 57.0 91 36.3
CsaV3_2G017610 Cucumis sativus L. HOM05D000036 ORTHO05D001038 2.5e-06 57.0 82 41.5
ECA247G0998 Erigeron canadensis HOM05D000036 ORTHO05D000095 2.5e-06 57.0 105 35.2
Gorai.007G302100 Gossypium raimondii HOM05D000036 ORTHO05D001038 2.5e-06 57.0 82 39.0
Gorai.008G143800 Gossypium raimondii HOM05D000036 ORTHO05D001038 2.5e-06 57.0 91 35.2
Lj5g0016257 Lotus japonicus HOM05D000036 ORTHO05D001038 2.5e-06 57.0 82 35.4
Lalb_Chr15g0078441 Lupinus albus HOM05D000036 ORTHO05D001038 2.5e-06 57.0 82 40.2
Lalb_Chr15g0078451 Lupinus albus HOM05D000036 ORTHO05D001038 2.5e-06 57.0 82 40.2
Peaxi162Scf00685g00121 Petunia axillaris HOM05D000036 ORTHO05D001038 2.5e-06 57.0 82 36.6
Potri.014G127000 Populus trichocarpa HOM05D000036 ORTHO05D001038 2.5e-06 57.0 91 34.1
SMO364G0770 Selaginella moellendorffii HOM05D000036 ORTHO05D002567 2.5e-06 57.0 96 33.3
MSTRG.18137 Avicennia marina HOM05D000036 ORTHO05D000095 3.3e-06 56.6 108 32.4
MELO3C015962.2 Cucumis melo HOM05D000036 ORTHO05D001038 3.3e-06 56.6 82 37.8
DCAR_002854 Daucus carota HOM05D000036 ORTHO05D001038 3.3e-06 56.6 91 33.0
ECA236G0922 Erigeron canadensis HOM05D000036 ORTHO05D000095 3.3e-06 56.6 118 28.8
FAN04G1911 Fragaria x ananassa HOM05D000036 ORTHO05D001038 3.3e-06 56.6 82 37.8
Gohir.A08G077250 Gossypium hirsutum HOM05D000036 ORTHO05D001038 3.3e-06 56.6 108 31.5
QL12p028008 Quercus lobata HOM05D000036 ORTHO05D001038 3.3e-06 56.6 91 34.1
Rhsim13G0008800 Rhododendron simsii HOM05D000036 ORTHO05D001038 3.3e-06 56.6 82 40.2
Sed0022840 Sechium edule HOM05D000036 ORTHO05D001038 3.3e-06 56.6 82 37.8
Solyc06g009190.4 Solanum lycopersicum HOM05D000036 ORTHO05D000095 3.3e-06 56.6 108 32.4
AL4G47130 Arabidopsis lyrata HOM05D000036 ORTHO05D001038 4.3e-06 56.2 82 39.0
Carub.0006s3486 Capsella rubella HOM05D000036 ORTHO05D000095 4.3e-06 56.2 96 35.4
Cfa004836 Carpinus fangiana HOM05D000036 ORTHO05D001038 4.3e-06 56.2 82 36.6
AUR62025554 Chenopodium quinoa HOM05D000036 ORTHO05D001038 4.3e-06 56.2 91 35.2
Gohir.D11G279900 Gossypium hirsutum HOM05D000036 ORTHO05D001038 4.3e-06 56.2 82 39.0
Psat0s1683g0120 Pisum sativum HOM05D000036 ORTHO05D001038 4.3e-06 56.2 91 36.3
RcHm_v2.0_Chr6g0294331 Rosa chinensis HOM05D000036 ORTHO05D001038 4.3e-06 56.2 92 39.1
Sc16g0008740 Simmondsia chinensis HOM05D000036 ORTHO05D001038 4.3e-06 56.2 82 36.6
Solyc09g075350.4 Solanum lycopersicum HOM05D000036 ORTHO05D000095 4.3e-06 56.2 108 31.5
TWI59G0986 Tripterygium wilfordii HOM05D000036 ORTHO05D000095 4.3e-06 56.2 96 32.3
BcaC02g06982 Brassica carinata HOM05D000036 ORTHO05D001038 5.7e-06 55.8 91 36.3
A04p34990 Brassica napus HOM05D000036 ORTHO05D001038 5.7e-06 55.8 91 36.3
C04p72890 Brassica napus HOM05D000036 ORTHO05D001038 5.7e-06 55.8 91 36.3
BolC4t28770H Brassica oleracea HOM05D000036 ORTHO05D001038 5.7e-06 55.8 91 36.3
BraA05t22952Z Brassica rapa HOM05D000036 ORTHO05D001038 5.7e-06 55.8 81 38.3
BraSC79t46689Z Brassica rapa HOM05D000036 ORTHO05D001038 5.7e-06 55.8 91 36.3
CARHR080050 Cardamine hirsuta HOM05D000036 ORTHO05D001038 5.7e-06 55.8 81 38.3
Cc11_g04910 Coffea canephora HOM05D000036 ORTHO05D000095 5.7e-06 55.8 99 33.3
Duzib133G0904 Durio zibethinus HOM05D000036 ORTHO05D001038 5.7e-06 55.8 91 34.1
FAN04G0912 Fragaria x ananassa HOM05D000036 ORTHO05D001038 5.7e-06 55.8 82 37.8
Gohir.A12G129000 Gossypium hirsutum HOM05D000036 ORTHO05D001038 5.7e-06 55.8 91 35.2
Lsat_1_v5_gn_8_164460 Lactuca sativa HOM05D000036 ORTHO05D000095 5.7e-06 55.8 105 31.4
Lalb_Chr02g0146461 Lupinus albus HOM05D000036 ORTHO05D001038 5.7e-06 55.8 82 36.6
MD02G1100400 Malus domestica HOM05D000036 ORTHO05D011952 5.7e-06 55.8 97 35.1
PGR119G1913 Punica granatum HOM05D000036 ORTHO05D001038 5.7e-06 55.8 82 39.0
PGSC0003DMG402017934 Solanum tuberosum HOM05D000036 ORTHO05D000095 5.7e-06 55.8 108 31.5
Thecc.05G315900 Theobroma cacao HOM05D000036 ORTHO05D001038 5.7e-06 55.8 82 36.6
AT4G02320 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 7.4e-06 55.5 108 34.3
Cfa005887 Carpinus fangiana HOM05D000036 ORTHO05D001038 7.4e-06 55.5 82 35.4
AUR62008690 Chenopodium quinoa HOM05D000036 ORTHO05D001038 7.4e-06 55.5 91 34.1
Migut.G01352 Erythranthe guttata HOM05D000036 ORTHO05D025316 7.4e-06 55.5 95 41.1
Migut.O00480 Erythranthe guttata HOM05D000036 ORTHO05D025316 7.4e-06 55.5 216 27.3
Nitab4.5_0000116g0370 Nicotiana tabacum HOM05D000036 ORTHO05D000095 7.4e-06 55.5 108 30.6
Sed0013747 Sechium edule HOM05D000036 ORTHO05D001038 7.4e-06 55.5 82 36.6
Sopen06g003960 Solanum pennellii HOM05D000036 ORTHO05D000095 7.4e-06 55.5 108 32.4
Thecc.01G303700 Theobroma cacao HOM05D000036 ORTHO05D001038 7.4e-06 55.5 91 34.1
HPP92_011854 Vanilla planifolia HOM05D000036 ORTHO05D001038 7.4e-06 55.5 82 34.1
ATR0782G016 Amborella trichopoda HOM05D000036 ORTHO05D001038 9.7e-06 55.1 92 34.8
arahy.Tifrunner.gnm1.ann1.LW4XRE Arachis hypogaea HOM05D000036 ORTHO05D001038 9.7e-06 55.1 82 39.0
C05p61550 Brassica napus HOM05D000036 ORTHO05D001038 9.7e-06 55.1 81 37.0
Duzib211G0327 Durio zibethinus HOM05D000036 ORTHO05D001038 9.7e-06 55.1 91 34.1
ECA247G3583 Erigeron canadensis HOM05D000036 ORTHO05D001038 9.7e-06 55.1 82 36.6
ECA248G0378 Erigeron canadensis HOM05D000036 ORTHO05D001038 9.7e-06 55.1 82 35.4
FvH4_5g35580 Fragaria vesca HOM05D000036 ORTHO05D001038 9.7e-06 55.1 82 37.8
Gohir.D08G086833 Gossypium hirsutum HOM05D000036 ORTHO05D001038 9.7e-06 55.1 91 36.3
Gohir.D12G132800 Gossypium hirsutum HOM05D000036 ORTHO05D001038 9.7e-06 55.1 91 34.1
Lsat_1_v5_gn_5_190321 Lactuca sativa HOM05D000036 ORTHO05D001038 9.7e-06 55.1 82 34.1
Lj2A1198G63 Lonicera japonica HOM05D000036 ORTHO05D000095 9.7e-06 55.1 105 29.5
Manes.09G173600 Manihot esculenta HOM05D000036 ORTHO05D001038 9.7e-06 55.1 82 35.4
Nn2g12900 Nelumbo nucifera HOM05D000036 ORTHO05D001038 9.7e-06 55.1 82 36.6
Nn4g25754 Nelumbo nucifera HOM05D000036 ORTHO05D000095 9.7e-06 55.1 94 34.0
QL06p001707 Quercus lobata HOM05D000036 ORTHO05D001038 9.7e-06 55.1 82 37.8
HPP92_013731 Vanilla planifolia HOM05D000036 ORTHO05D001038 9.7e-06 55.1 82 35.4


User provided reference genes

Program Settings