Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 1.7e-129 466.5 330 100.0
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 2.6e-85 319.7 333 74.2
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 7.7e-85 318.2 351 73.2
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 6.9e-78 295.0 336 70.5
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 1.1e-72 277.7 329 68.4
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 2.8e-71 273.1 349 67.3
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 1.7e-68 263.8 359 62.7
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 3.8e-68 262.7 392 59.7
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 5.0e-68 262.3 340 65.0
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 5.0e-68 262.3 338 64.8
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 5.0e-68 262.3 331 49.8
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 2.5e-67 260.0 353 59.5
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 5.5e-67 258.8 353 65.2
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 9.4e-67 258.1 337 65.6
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 9.4e-67 258.1 351 63.5
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 9.4e-67 258.1 343 53.9
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 1.2e-66 257.7 340 64.7
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 2.1e-66 256.9 365 63.3
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 3.6e-66 256.1 360 58.3
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 6.1e-66 255.4 369 58.5
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 1.0e-65 254.6 339 63.1
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 1.4e-65 254.2 333 55.9
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 1.4e-65 254.2 348 56.6
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 2.3e-65 253.4 344 68.6
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 3.0e-65 253.1 332 60.8
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 8.8e-65 251.5 367 59.1
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 8.8e-65 251.5 340 59.4
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 4.4e-64 249.2 359 60.7
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 6.3e-63 245.4 333 61.3
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 2.4e-62 243.4 345 46.4
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 3.1e-62 243.0 351 61.3
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 5.3e-62 242.3 333 57.1
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 1.2e-61 241.1 333 48.3
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.6e-61 240.7 348 60.6
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.6e-61 240.7 348 60.6
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 2.0e-61 240.4 333 47.7
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 4.5e-61 239.2 342 60.8
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 5.9e-61 238.8 364 59.1
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 7.7e-61 238.4 355 50.4
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 2.9e-60 236.5 342 61.4
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 8.5e-60 235.0 348 51.7
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 1.5e-59 234.2 340 59.7
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.9e-59 233.8 343 63.0
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 2.5e-59 233.4 374 54.5
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 4.2e-59 232.6 338 53.8
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 7.2e-59 231.9 357 61.6
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 9.4e-59 231.5 349 63.6
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 1.2e-58 231.1 355 64.2
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 1.2e-58 231.1 332 54.2
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 2.1e-58 230.3 344 59.9
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 2.7e-58 229.9 365 61.4
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 3.6e-58 229.6 332 59.0
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 3.6e-58 229.6 365 55.3
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 1.0e-57 228.0 348 51.7
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 2.3e-57 226.9 348 62.4
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.3e-57 226.9 347 58.8
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 3.0e-57 226.5 338 59.8
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 4.0e-57 226.1 369 59.3
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 5.2e-57 225.7 343 66.8
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 6.8e-57 225.3 365 59.5
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 8.8e-57 224.9 362 55.8
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 1.2e-56 224.6 379 58.3
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 1.2e-56 224.6 340 56.5
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 1.2e-56 224.6 340 56.5
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.2e-56 224.6 348 61.8
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 7.5e-56 221.9 342 58.2
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 2.2e-55 220.3 346 54.6
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 2.2e-55 220.3 331 56.8
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 2.8e-55 219.9 363 43.8
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 6.3e-55 218.8 342 52.9
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 8.3e-55 218.4 371 57.1
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 8.3e-55 218.4 375 58.1
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 1.1e-54 218.0 331 57.4
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 1.8e-54 217.2 345 60.9
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 3.1e-54 216.5 342 58.2
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 7.0e-54 215.3 339 57.2
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 9.1e-54 214.9 357 60.2
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 3.5e-53 213.0 389 55.5
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 4.5e-53 212.6 160 70.0
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 5.0e-52 209.1 337 54.3
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 8.5e-52 208.4 390 51.8
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 2.5e-51 206.8 342 59.6
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 9.4e-51 204.9 375 57.9
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 2.1e-50 203.8 340 56.2
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 7.0e-46 188.7 288 56.2
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 3.8e-44 183.0 313 59.7
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 7.2e-43 178.7 396 49.5
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 1.2e-42 177.9 343 52.5
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 1.4e-41 174.5 345 47.8
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 6.3e-39 165.6 335 38.5
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 6.3e-39 165.6 120 70.8
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 8.3e-39 165.2 270 59.3
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 1.8e-38 164.1 188 52.7
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 3.9e-36 156.4 147 62.6
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 5.0e-36 156.0 140 60.0
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 1.9e-35 154.1 154 59.7
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 2.5e-35 153.7 383 41.0
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 2.8e-34 150.2 311 52.1
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 1.2e-32 144.8 122 65.6
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 7.0e-30 135.6 113 61.9
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.0e-29 134.0 262 50.8
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 4.3e-27 126.3 272 51.5
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 3.6e-26 123.2 177 41.8
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 1.2e-24 118.2 185 41.1
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 6.4e-23 112.5 159 46.5
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 2.1e-21 107.5 86 70.9
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 2.1e-21 107.5 149 43.0
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 2.7e-21 107.1 405 35.3
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 1.0e-20 105.1 102 55.9
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 2.3e-20 104.0 171 39.8
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 5.1e-20 102.8 91 61.5
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 4.7e-18 96.3 95 55.8
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 2.3e-17 94.0 94 54.3
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.5e-16 91.3 85 64.7
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 2.0e-16 90.9 78 64.1
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 1.4e-14 84.7 77 63.6
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.2e-14 83.6 118 44.9
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 6.6e-12 75.9 102 45.1
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 6.6e-12 75.9 102 45.1
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 1.9e-11 74.3 107 45.8
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 1.9e-11 74.3 105 42.9
Oeu042970.1 Olea europaea HOM05D006566 ORTHO05D004366 5.6e-11 72.8 84 53.6
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 7.3e-11 72.4 78 52.6
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 7.3e-11 72.4 73 53.4
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 2.1e-10 70.9 102 42.2
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 4.7e-10 69.7 72 55.6
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 2.4e-09 67.4 41 73.2
arahy.Tifrunner.gnm1.ann1.0AYN0M Arachis hypogaea HOM05D008215 ORTHO05D004366 2.6e-08 63.9 99 45.5
arahy.Tifrunner.gnm1.ann1.1P551D Arachis hypogaea HOM05D008215 ORTHO05D004366 3.4e-08 63.5 102 43.1
arahy.Tifrunner.gnm1.ann1.U9CRBQ Arachis hypogaea HOM05D008215 ORTHO05D004366 5.8e-08 62.8 99 44.4
arahy.Tifrunner.gnm1.ann1.3DHQ20 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.7e-07 61.2 105 41.0
arahy.Tifrunner.gnm1.ann1.P1RV09 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.7e-07 61.2 99 43.4
arahy.Tifrunner.gnm1.ann1.1NHG9F Arachis hypogaea HOM05D008215 ORTHO05D004366 3.8e-07 60.1 102 41.2
arahy.Tifrunner.gnm1.ann1.KE1U92 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.8e-07 60.1 99 42.4
arahy.Tifrunner.gnm1.ann1.01UHHT Arachis hypogaea HOM05D008215 ORTHO05D004366 6.4e-07 59.3 105 40.0
arahy.Tifrunner.gnm1.ann1.TAU4F3 Arachis hypogaea HOM05D008215 ORTHO05D004366 8.4e-07 58.9 107 42.1
arahy.Tifrunner.gnm1.ann1.PJX35B Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-06 58.2 105 39.0
arahy.Tifrunner.gnm1.ann1.8K6P1P Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-06 57.4 94 42.6
arahy.Tifrunner.gnm1.ann1.J3W7RL Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-06 57.4 99 42.4
arahy.Tifrunner.gnm1.ann1.N5TKCQ Arachis hypogaea HOM05D008215 ORTHO05D004366 3.2e-06 57.0 114 36.8
arahy.Tifrunner.gnm1.ann1.U6CLNF Arachis hypogaea HOM05D008215 ORTHO05D004366 3.2e-06 57.0 102 40.2
arahy.Tifrunner.gnm1.ann1.15M8G9 Arachis hypogaea HOM05D008215 ORTHO05D004366 5.4e-06 56.2 99 41.4


User provided reference genes

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