Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 3.6e-198 694.9 390 100.0
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 3.1e-85 319.7 384 54.4
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 6.9e-77 292.0 364 57.7
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 3.7e-62 243.0 389 46.0
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.2e-60 238.0 393 43.0
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 3.2e-58 229.9 380 45.0
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 5.5e-58 229.2 380 44.7
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 8.0e-57 225.3 380 43.2
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.4e-56 224.6 378 45.0
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 5.2e-56 222.6 380 43.4
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 6.8e-56 222.2 378 44.7
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 2.0e-55 220.7 378 44.4
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 2.0e-55 220.7 374 43.9
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 4.4e-55 219.5 388 43.6
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 5.7e-55 219.2 390 42.8
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 1.3e-54 218.0 376 42.6
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 3.7e-54 216.5 361 44.9
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 3.1e-53 213.4 389 41.9
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 4.1e-53 213.0 390 42.6
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 9.1e-53 211.8 378 41.5
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.0e-52 210.7 367 43.1
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 5.9e-52 209.1 378 42.6
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 6.5e-51 205.7 367 42.8
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 8.5e-51 205.3 386 41.7
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 1.1e-50 204.9 386 40.4
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 1.5e-50 204.5 378 43.1
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 3.2e-50 203.4 384 41.9
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 4.2e-50 203.0 376 40.4
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 5.5e-50 202.6 376 43.4
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 7.2e-50 202.2 386 40.9
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 9.4e-50 201.8 376 42.0
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 1.2e-49 201.4 394 39.8
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.7e-49 200.3 377 42.4
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 3.6e-49 199.9 387 39.8
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 6.1e-49 199.1 384 40.9
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 6.1e-49 199.1 401 39.9
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 1.4e-48 198.0 401 38.7
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 1.8e-48 197.6 391 41.2
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 2.3e-48 197.2 371 42.0
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 3.0e-48 196.8 378 41.3
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 4.0e-48 196.4 392 40.6
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 5.7e-47 192.6 385 39.7
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 1.3e-46 191.4 397 39.8
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 1.3e-46 191.4 368 41.3
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 1.7e-46 191.0 377 40.3
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 2.2e-46 190.7 368 42.1
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 4.9e-46 189.5 388 40.2
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 4.9e-46 189.5 389 41.9
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.1e-45 188.3 376 41.2
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 1.8e-45 187.6 387 40.8
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 9.2e-45 185.3 371 40.7
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 1.6e-44 184.5 383 39.2
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 2.7e-44 183.7 384 41.4
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 2.7e-44 183.7 380 41.3
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 4.5e-44 183.0 427 38.6
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 6.6e-43 179.1 372 40.6
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 4.3e-42 176.4 394 39.8
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 5.6e-42 176.0 382 39.5
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.1e-41 174.1 425 37.4
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 1.0e-40 171.8 390 40.0
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 1.8e-40 171.0 380 40.5
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 5.2e-40 169.5 381 40.2
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 1.5e-39 167.9 453 33.8
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 7.5e-39 165.6 289 39.8
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 7.8e-36 155.6 300 42.7
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 2.3e-35 154.1 377 37.4
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 6.6e-35 152.5 470 34.0
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 7.3e-34 149.1 298 41.6
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 7.3e-34 149.1 383 36.6
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 2.1e-33 147.5 372 37.6
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 1.0e-32 145.2 377 35.8
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 1.4e-32 144.8 425 34.6
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 1.4e-32 144.8 422 33.9
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 6.8e-32 142.5 374 36.9
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 1.5e-31 141.4 435 33.3
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.5e-31 141.4 379 35.6
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 9.8e-31 138.7 333 37.2
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 1.7e-30 137.9 289 37.4
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 2.2e-30 137.5 292 38.7
SGA_v2.0_scaffold1G00727 Striga asiatica HOM05D006327 ORTHO05D016198 2.9e-30 137.1 119 62.2
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 8.3e-30 135.6 377 34.0
SGA_v2.0_scaffold44G16909 Striga asiatica HOM05D003199 ORTHO05D003528 1.9e-29 134.4 106 68.9
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 4.1e-29 133.3 378 33.1
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 4.1e-29 133.3 377 34.7
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 1.2e-28 131.7 382 33.8
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 3.5e-28 130.2 387 33.3
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 6.0e-28 129.4 380 33.7
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 1.7e-27 127.9 383 33.4
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 1.7e-27 127.9 377 35.5
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 1.9e-26 124.4 380 33.2
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.6e-25 121.3 371 34.8
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 4.7e-25 119.8 378 32.0
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.2e-23 115.2 380 31.8
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 2.6e-23 114.0 385 31.9
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 2.9e-22 110.5 380 31.6
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 3.7e-22 110.2 295 34.6
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 1.4e-21 108.2 294 36.4
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 1.2e-20 105.1 371 31.3
SGA_v2.0_scaffold163G38002 Striga asiatica HOM05D001488 ORTHO05D016198 3.5e-20 103.6 84 67.9
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 1.2e-17 95.1 373 30.6
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 6.2e-17 92.8 160 41.2
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 5.2e-16 89.7 405 28.9
SGA_v2.0_scaffold5G02647 Striga asiatica HOM05D003491 ORTHO05D004293 6.8e-16 89.4 56 85.7
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.2e-15 88.6 330 30.0
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 9.9e-15 85.5 172 44.2
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.3e-14 85.1 316 29.1
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 3.8e-14 83.6 370 29.5
MSTRG.11411 Avicennia marina HOM05D006327 ORTHO05D007952 8.4e-14 82.4 96 51.0
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 4.1e-13 80.1 229 36.7
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.1e-12 77.8 277 33.2
SGA_v2.0_scaffold157G37391 Striga asiatica HOM05D017365 ORTHO05D016198 1.7e-11 74.7 141 46.1
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.3e-11 74.3 57 61.4
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.0e-11 73.9 57 57.9
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 5.1e-11 73.2 48 66.7
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.6e-11 72.4 75 48.0
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.1e-10 72.0 115 38.3
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.9e-10 71.2 51 62.7
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.9e-10 71.2 110 39.1
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 7.3e-10 69.3 77 53.2
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-09 68.2 115 37.4
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-09 68.2 115 37.4
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.8e-09 67.4 57 54.4
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 1.8e-08 64.7 134 35.8
SGA_v2.0_scaffold42G15976 Striga asiatica HOM05D000074 ORTHO05D001262 3.8e-06 57.0 51 62.7


User provided reference genes

Program Settings