Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.2e-218 763.5 551 100.0
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 4.5e-130 469.2 554 64.4
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.0e-126 458.0 553 66.7
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 9.1e-123 444.9 568 62.1
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 7.9e-111 405.2 566 57.2
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.0e-110 404.8 555 58.0
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 3.0e-110 403.3 556 58.8
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 3.9e-110 402.9 562 64.6
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 6.7e-110 402.1 552 57.1
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 6.7e-110 402.1 568 60.6
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 2.0e-109 400.6 555 58.2
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 3.3e-109 399.8 559 56.9
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 5.7e-109 399.1 557 59.2
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.3e-108 397.9 561 59.0
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.7e-108 397.5 558 57.5
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 4.1e-107 392.9 560 58.2
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 4.1e-107 392.9 564 59.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.3e-107 392.5 560 63.9
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.5e-106 389.4 578 56.4
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 5.9e-106 389.0 572 55.6
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.3e-105 387.9 563 64.5
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 2.9e-105 386.7 559 57.8
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.8e-105 386.3 563 58.1
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 6.5e-105 385.6 557 63.0
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 3.2e-104 383.3 559 57.2
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.2e-104 382.9 554 58.3
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 7.2e-104 382.1 571 57.4
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.6e-103 380.9 554 57.8
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.1e-103 380.6 554 58.1
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 3.6e-103 379.8 555 55.9
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 1.4e-102 377.9 570 60.0
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.0e-102 376.3 551 63.3
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 5.2e-102 375.9 561 58.1
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.2e-101 374.8 550 57.5
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-101 374.4 555 64.9
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 2.0e-101 374.0 567 59.6
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 2.0e-101 374.0 552 57.4
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.6e-101 373.6 554 56.9
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 5.7e-101 372.5 555 60.2
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.7e-100 370.9 562 65.8
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 2.8e-100 370.2 625 50.7
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 4.8e-100 369.4 573 54.1
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.4e-99 367.9 556 56.8
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 2.4e-99 367.1 554 60.3
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 2.4e-99 367.1 547 55.8
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 7.0e-99 365.5 571 52.7
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 9.1e-99 365.2 559 56.9
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.2e-98 364.8 559 56.4
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.6e-98 364.4 569 54.5
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 5.9e-98 362.5 573 54.8
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 5.9e-98 362.5 573 55.3
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.2e-97 360.5 559 54.9
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.8e-97 359.8 552 62.9
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 5.0e-97 359.4 562 57.8
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 8.5e-97 358.6 558 52.0
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.2e-96 356.3 596 51.2
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 7.2e-96 355.5 551 55.2
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.2e-95 354.8 557 59.1
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 3.0e-94 350.1 568 54.9
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 8.8e-94 348.6 557 56.0
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.5e-93 347.8 532 61.5
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.5e-93 347.8 557 58.9
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 2.0e-93 347.4 591 55.8
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 5.7e-93 345.9 562 55.2
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 9.8e-93 345.1 556 53.4
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.3e-92 344.7 557 56.7
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.7e-92 344.4 557 54.2
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 2.2e-92 344.0 555 53.5
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 3.1e-91 340.1 581 56.6
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 9.1e-91 338.6 568 57.7
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 5.9e-90 335.9 564 52.3
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 7.7e-90 335.5 564 56.2
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.0e-89 335.1 560 53.2
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.3e-89 334.7 565 55.2
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 2.9e-89 333.6 557 60.3
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.5e-88 331.3 572 54.2
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.5e-88 331.3 561 51.0
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.5e-88 330.5 553 55.9
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 5.5e-88 329.3 555 62.9
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.6e-87 327.8 553 56.8
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.5e-85 321.2 553 51.0
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 9.8e-85 318.5 580 52.8
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 4.9e-84 316.2 560 56.4
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 9.2e-83 312.0 389 54.2
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 3.5e-82 310.1 579 52.3
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.8e-81 306.6 558 58.1
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 3.8e-81 306.6 556 54.0
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 8.6e-81 305.4 569 52.2
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.9e-80 304.3 584 53.6
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 4.3e-80 303.1 557 59.1
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.8e-78 297.7 578 52.4
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 2.3e-78 297.4 612 48.9
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 5.2e-78 296.2 558 54.5
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 3.7e-76 290.0 574 54.4
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 4.9e-76 289.7 562 46.1
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 8.3e-76 288.9 502 56.0
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 3.0e-73 280.4 561 51.0
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 6.6e-73 279.3 580 46.2
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.1e-72 278.5 569 47.6
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 7.3e-72 275.8 166 86.1
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 2.1e-71 274.2 552 55.4
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.1e-71 274.2 216 72.7
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.1e-71 274.2 182 80.8
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.4e-70 271.6 571 52.4
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.8e-70 271.2 565 48.8
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 3.1e-70 270.4 155 92.3
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.2e-69 268.5 185 78.4
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 3.4e-69 266.9 596 49.2
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 7.5e-69 265.8 602 45.3
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 2.2e-68 264.2 569 49.6
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.2e-68 264.2 565 46.0
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 3.7e-68 263.5 160 85.0
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 6.6e-65 252.7 566 47.2
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.5e-64 251.5 473 53.7
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 3.3e-64 250.4 614 46.6
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 7.3e-64 249.2 564 48.2
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.4e-59 235.0 478 49.8
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 1.7e-57 228.0 582 43.6
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.6e-55 221.5 176 68.2
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.2e-51 207.2 509 42.2
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 9.2e-51 205.7 160 71.2
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.4e-43 181.0 503 46.1
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.2e-42 178.7 549 35.9
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.6e-42 178.3 316 51.3
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.7e-36 158.3 123 72.4
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 9.3e-35 152.5 454 43.8
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 3.7e-31 140.6 291 49.8
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 4.5e-29 133.7 100 77.0
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.1e-26 124.8 101 71.3
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.3e-25 122.1 105 70.5
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 3.9e-25 120.6 81 71.6
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.9e-24 118.2 126 58.7
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 2.5e-24 117.9 102 70.6
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.3e-23 115.5 124 54.0
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 4.8e-23 113.6 74 77.0
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 9.0e-22 109.4 168 44.6
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.9e-19 101.7 528 33.7
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.9e-19 101.7 101 63.4
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.5e-18 97.4 64 79.7
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 5.7e-16 90.1 103 56.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.1e-14 85.9 103 58.3
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 4.5e-13 80.5 86 55.8
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 3.8e-12 77.4 58 77.6
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 8.5e-12 76.3 46 82.6
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 1.6e-10 72.0 77 58.4
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 6.1e-10 70.1 75 60.0
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 6.1e-10 70.1 75 60.0
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 3.0e-09 67.8 156 32.1


User provided reference genes

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