Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 8.9e-183 643.7 370 100.0
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 3.0e-106 389.4 319 72.7
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 4.2e-92 342.4 374 60.7
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 6.8e-90 335.1 370 57.6
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 6.8e-90 335.1 356 59.0
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 5.7e-89 332.0 354 58.8
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 2.3e-77 293.5 371 58.2
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 7.3e-76 288.5 371 54.4
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 6.2e-75 285.4 380 52.6
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.0e-74 282.7 361 53.2
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 8.9e-74 281.6 375 51.2
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.6e-73 280.0 367 53.4
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.2e-72 276.9 375 50.4
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.7e-72 276.2 373 50.7
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.2e-70 271.2 373 52.5
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 2.1e-70 270.4 336 59.5
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 3.5e-70 269.6 360 52.8
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 3.0e-69 266.5 326 55.2
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.1e-69 265.8 371 50.4
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.5e-68 264.2 345 50.7
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 4.3e-68 262.7 352 51.4
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 5.6e-68 262.3 370 48.4
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 9.5e-68 261.5 369 48.5
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.1e-67 260.4 372 50.8
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 4.7e-67 259.2 360 50.3
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 6.2e-67 258.8 375 54.4
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 5.2e-66 255.8 371 50.1
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 8.9e-66 255.0 373 49.6
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.2e-65 254.6 392 49.0
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.2e-65 254.6 352 50.3
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 2.0e-65 253.8 357 49.3
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.4e-65 253.1 373 54.4
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 7.6e-65 251.9 366 48.1
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.3e-64 251.1 370 47.0
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.7e-64 250.8 380 49.7
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 3.7e-64 249.6 370 49.7
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 6.4e-64 248.8 370 49.5
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.4e-63 247.7 373 49.6
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.2e-63 246.5 364 49.2
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 3.2e-63 246.5 298 53.7
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 3.2e-63 246.5 294 54.1
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 7.1e-63 245.4 353 47.6
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 9.2e-63 245.0 359 45.7
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 3.5e-62 243.0 362 49.4
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 7.8e-62 241.9 334 49.7
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 7.8e-62 241.9 351 46.7
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 5.1e-61 239.2 367 44.4
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 8.6e-61 238.4 352 48.6
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.5e-60 236.9 372 47.6
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 2.5e-60 236.9 351 47.3
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 3.3e-60 236.5 264 57.2
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 5.6e-60 235.7 361 44.9
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 5.6e-60 235.7 351 50.4
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 5.6e-60 235.7 299 52.2
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 9.6e-60 235.0 371 47.2
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 8.1e-59 231.9 371 45.8
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.4e-58 230.3 272 54.4
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.8e-58 228.8 361 46.5
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-57 228.0 355 46.2
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 2.0e-57 227.3 359 44.8
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 2.0e-57 227.3 311 49.8
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 2.6e-57 226.9 369 46.1
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.6e-57 226.9 267 55.1
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 2.6e-57 226.9 367 47.4
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 3.4e-57 226.5 364 45.1
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 7.6e-57 225.3 369 46.3
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.6e-57 225.3 371 46.1
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.3e-56 224.6 377 45.4
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.7e-56 224.2 256 56.2
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 3.8e-56 223.0 239 56.1
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 6.4e-56 222.2 245 58.0
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 8.4e-56 221.9 373 45.8
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.1e-55 221.5 372 44.1
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.4e-55 221.1 382 45.3
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 1.4e-55 221.1 376 43.4
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 3.2e-55 219.9 237 56.5
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 9.3e-55 218.4 326 47.5
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 1.2e-54 218.0 366 46.4
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 2.1e-54 217.2 362 44.2
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 4.6e-54 216.1 372 44.1
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 1.0e-53 214.9 355 47.0
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.7e-53 214.2 387 43.2
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 5.1e-53 212.6 358 43.0
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 6.6e-53 212.2 360 43.3
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 8.7e-53 211.8 355 45.6
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 1.1e-52 211.5 322 48.1
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.5e-52 210.3 376 44.7
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 4.3e-52 209.5 281 52.0
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 4.3e-52 209.5 361 44.3
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 3.6e-51 206.5 279 50.2
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 3.6e-51 206.5 336 47.9
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 4.8e-51 206.1 334 46.1
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.4e-50 204.5 381 43.0
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 1.8e-50 204.1 280 50.7
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.8e-50 204.1 277 46.6
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.8e-50 204.1 293 50.2
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.8e-50 204.1 373 43.7
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.5e-49 201.1 353 43.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 4.4e-49 199.5 349 45.3
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 5.8e-49 199.1 294 46.6
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 7.6e-49 198.7 361 41.6
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 9.9e-49 198.4 278 50.7
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 1.7e-48 197.6 366 43.4
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 8.4e-48 195.3 289 49.5
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 1.9e-47 194.1 361 46.5
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 4.2e-47 193.0 356 44.7
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 7.1e-47 192.2 307 47.9
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.7e-46 190.3 367 41.7
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 4.6e-46 189.5 360 43.3
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 4.6e-46 189.5 369 42.5
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.7e-45 187.6 296 42.9
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 5.6e-44 182.6 295 46.4
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 9.6e-44 181.8 284 45.1
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 4.5e-41 172.9 369 42.0
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 5.8e-41 172.6 300 44.3
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 5.8e-41 172.6 301 42.5
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 4.9e-40 169.5 294 42.9
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 8.4e-40 168.7 306 42.5
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.6e-38 164.5 354 39.8
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 2.1e-38 164.1 321 42.4
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 3.9e-37 159.8 308 40.6
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 6.7e-37 159.1 295 43.7
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 8.7e-37 158.7 314 41.4
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 2.5e-36 157.1 311 40.8
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 2.5e-36 157.1 311 40.8
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 2.5e-36 157.1 311 40.8
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.6e-35 154.5 248 46.0
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 4.8e-35 152.9 345 38.0
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 6.2e-35 152.5 347 38.9
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 8.1e-35 152.1 319 39.8
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.2e-33 148.3 296 39.5
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.3e-27 128.3 185 51.9
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 2.7e-22 110.5 326 33.1
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 9.1e-10 68.9 133 39.1
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 2.0e-09 67.8 79 46.8
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 3.4e-09 67.0 173 35.3
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 3.4e-09 67.0 87 41.4
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 4.5e-09 66.6 74 51.4
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 1.7e-08 64.7 106 40.6
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.7e-08 64.7 167 33.5
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.9e-08 63.9 93 39.8
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.9e-08 63.9 93 39.8
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 3.8e-08 63.5 159 34.0
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 3.8e-08 63.5 157 31.2
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 5.0e-08 63.2 162 30.9
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 6.5e-08 62.8 192 27.6
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 6.5e-08 62.8 158 32.3
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 8.5e-08 62.4 61 45.9
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.1e-07 62.0 151 33.1
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 1.4e-07 61.6 123 34.1
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.4e-07 61.6 265 27.2
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 1.9e-07 61.2 57 47.4
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.9e-07 61.2 162 30.9
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 2.5e-07 60.8 36 83.3
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 4.2e-07 60.1 70 44.3
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 5.5e-07 59.7 176 31.8
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 7.2e-07 59.3 108 35.2
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 9.4e-07 58.9 169 34.9
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 1.6e-06 58.2 129 38.0
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 2.1e-06 57.8 123 32.5
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 2.1e-06 57.8 135 29.6
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 2.1e-06 57.8 150 32.0
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 2.7e-06 57.4 175 29.7
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 2.7e-06 57.4 159 32.1
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 2.7e-06 57.4 229 27.1
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 2.7e-06 57.4 122 37.7
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 3.6e-06 57.0 118 35.6
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 6.1e-06 56.2 70 44.3
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 6.1e-06 56.2 104 36.5
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 6.1e-06 56.2 200 30.0
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 6.1e-06 56.2 199 28.1
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 6.1e-06 56.2 180 27.8
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 7.9e-06 55.8 142 29.6
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 7.9e-06 55.8 140 32.9


User provided reference genes

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