Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold56G19996 Striga asiatica HOM05D000036 ORTHO05D016457 7.9e-52 206.8 105 100.0
MSTRG.19421 Avicennia marina HOM05D000036 ORTHO05D000095 5.2e-19 97.8 102 56.9
SalBow6G1085 Salvia bowleyana HOM05D000036 ORTHO05D000095 5.7e-18 94.4 101 48.5
SGA_v2.0_scaffold31G12699 Striga asiatica HOM05D000036 ORTHO05D000095 2.4e-16 89.0 101 52.5
Peaxi162Scf00452g00008 Petunia axillaris HOM05D000036 ORTHO05D000095 8.0e-12 73.9 72 48.6
Actinidia33516 Actinidia chinensis HOM05D000036 ORTHO05D000095 1.0e-11 73.6 76 47.4
SalBow5G0574 Salvia bowleyana HOM05D000036 ORTHO05D000095 1.0e-11 73.6 68 52.9
HanXRQChr10g0319851 Helianthus annuus HOM05D000036 ORTHO05D000095 1.4e-11 73.2 71 53.5
Solyc07g017600.3 Solanum lycopersicum HOM05D000036 ORTHO05D000095 1.4e-11 73.2 86 44.2
Sopen07g006400 Solanum pennellii HOM05D000036 ORTHO05D000095 1.4e-11 73.2 86 44.2
PGSC0003DMG400015933 Solanum tuberosum HOM05D000036 ORTHO05D000095 1.4e-11 73.2 84 47.6
CAN.G1553.2 Capsicum annuum HOM05D000036 ORTHO05D000095 1.8e-11 72.8 105 40.0
Migut.J00872 Erythranthe guttata HOM05D000036 ORTHO05D000095 1.8e-11 72.8 96 44.8
Migut.L01602 Erythranthe guttata HOM05D000036 ORTHO05D000095 1.8e-11 72.8 104 41.3
MSTRG.10484 Avicennia marina HOM05D000036 ORTHO05D000095 2.3e-11 72.4 79 45.6
Ciclev10007993m.g Citrus clementina HOM05D000036 ORTHO05D000095 2.3e-11 72.4 76 46.1
Nitab4.5_0003016g0020 Nicotiana tabacum HOM05D000036 ORTHO05D000095 2.3e-11 72.4 72 50.0
Atru.chr7.1794 Acer truncatum HOM05D000036 ORTHO05D000095 3.0e-11 72.0 72 48.6
Dinv42437 Davidia involucrata HOM05D000036 ORTHO05D000095 4.0e-11 71.6 90 41.1
Lsat_1_v5_gn_5_138261 Lactuca sativa HOM05D000036 ORTHO05D000095 5.2e-11 71.2 71 52.1
TAR624G1370 Trochodendron aralioides HOM05D000036 ORTHO05D000095 5.2e-11 71.2 87 41.4
CSS0035457 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 6.8e-11 70.9 94 42.6
CSS0036537 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 6.8e-11 70.9 94 42.6
Dinv25496 Davidia involucrata HOM05D000036 ORTHO05D000095 8.8e-11 70.5 72 47.2
ECA234G0766 Erigeron canadensis HOM05D000036 ORTHO05D000095 1.2e-10 70.1 68 52.9
Manes.03G054300 Manihot esculenta HOM05D000036 ORTHO05D000095 1.2e-10 70.1 72 48.6
MD15G1224900 Malus domestica HOM05D000036 ORTHO05D000095 2.0e-10 69.3 71 47.9
MD02G1104600 Malus domestica HOM05D000036 ORTHO05D000095 3.4e-10 68.6 72 47.2
COL.COLO4_21186 Corchorus olitorius HOM05D000036 ORTHO05D000095 4.4e-10 68.2 71 45.1
Gorai.001G018300 Gossypium raimondii HOM05D000036 ORTHO05D000095 4.4e-10 68.2 72 43.1
Gohir.A07G017800 Gossypium hirsutum HOM05D000036 ORTHO05D000095 5.7e-10 67.8 71 43.7
Gohir.D07G017600 Gossypium hirsutum HOM05D000036 ORTHO05D000095 5.7e-10 67.8 71 43.7
FvH4_1g09610 Fragaria vesca HOM05D000036 ORTHO05D000095 7.5e-10 67.4 79 43.0
FAN26G2413 Fragaria x ananassa HOM05D000036 ORTHO05D000095 7.5e-10 67.4 79 43.0
FAN26G2972 Fragaria x ananassa HOM05D000036 ORTHO05D000095 7.5e-10 67.4 79 43.0
FAN28G1544 Fragaria x ananassa HOM05D000036 ORTHO05D000095 1.7e-09 66.2 79 43.0
Gohir.A06G084600 Gossypium hirsutum HOM05D000036 ORTHO05D000095 1.7e-09 66.2 101 35.6
Gohir.D06G081500 Gossypium hirsutum HOM05D000036 ORTHO05D000095 1.7e-09 66.2 82 40.2
Gorai.010G094800 Gossypium raimondii HOM05D000036 ORTHO05D000095 1.7e-09 66.2 101 35.6
PGR044G1560 Punica granatum HOM05D000036 ORTHO05D000095 1.7e-09 66.2 75 44.0
QL11p003386 Quercus lobata HOM05D000036 ORTHO05D000095 1.7e-09 66.2 71 47.9
Ciclev10017007m.g Citrus clementina HOM05D000036 ORTHO05D016457 2.2e-09 65.9 74 44.6
Duzib168G0496 Durio zibethinus HOM05D000036 ORTHO05D000095 2.2e-09 65.9 69 44.9
Cc00_g13760 Coffea canephora HOM05D000036 ORTHO05D000095 2.8e-09 65.5 72 44.4
Thecc.09G068500 Theobroma cacao HOM05D000036 ORTHO05D000095 2.8e-09 65.5 69 46.4
FAN19G0660 Fragaria x ananassa HOM05D000036 ORTHO05D000095 3.7e-09 65.1 79 41.8
Cc00_g13750 Coffea canephora HOM05D000036 ORTHO05D000095 6.3e-09 64.3 97 37.1
Manes.16G089100 Manihot esculenta HOM05D000036 ORTHO05D000095 6.3e-09 64.3 97 40.2
Potri.006G134500 Populus trichocarpa HOM05D000036 ORTHO05D000095 6.3e-09 64.3 72 41.7
Glyma.17G044500 Glycine max HOM05D000036 ORTHO05D000095 8.3e-09 63.9 81 38.3
MELO3C013699.2 Cucumis melo HOM05D000036 ORTHO05D000095 1.1e-08 63.5 91 41.8
GSVIVG01023135001 Vitis vinifera HOM05D000036 ORTHO05D000095 1.1e-08 63.5 72 43.1
CiPaw.03G199400 Carya illinoinensis HOM05D000036 ORTHO05D000095 1.4e-08 63.2 71 47.9
Duzib150G1315 Durio zibethinus HOM05D000036 ORTHO05D000095 1.4e-08 63.2 71 43.7
Glyma.13G115400 Glycine max HOM05D000036 ORTHO05D000095 1.4e-08 63.2 73 43.8
Aqoxy7G00929 Aquilegia oxysepala HOM05D000036 ORTHO05D000095 1.8e-08 62.8 71 42.3
CsaV3_3G000050 Cucumis sativus L. HOM05D000036 ORTHO05D000095 1.8e-08 62.8 91 41.8
DCAR_028537 Daucus carota HOM05D000036 ORTHO05D000095 2.4e-08 62.4 68 42.6
SGA_v2.0_scaffold55G19864 Striga asiatica HOM05D000036 ORTHO05D000095 2.4e-08 62.4 70 44.3
Cpa.g.sc344.2 Carica papaya HOM05D000036 ORTHO05D000095 3.1e-08 62.0 69 42.0
AL5G21360 Arabidopsis lyrata HOM05D000036 ORTHO05D000095 4.1e-08 61.6 76 36.8
THA.LOC104815068 Tarenaya hassleriana HOM05D000036 ORTHO05D000095 4.1e-08 61.6 78 37.2
Carub.0005s0914 Capsella rubella HOM05D000036 ORTHO05D000095 5.4e-08 61.2 75 36.0
Oeu004791.1 Olea europaea HOM05D000036 ORTHO05D000095 5.4e-08 61.2 73 45.2
Prupe.7G190300 Prunus persica HOM05D000036 ORTHO05D000095 7.0e-08 60.8 72 41.7
Haze_26079 Corylus avellana HOM05D000036 ORTHO05D000095 9.2e-08 60.5 70 45.7
Migut.J00871 Erythranthe guttata HOM05D000036 ORTHO05D000095 9.2e-08 60.5 71 46.5
Ah.09g228860 Amaranthus hybridus HOM05D000036 ORTHO05D000095 1.2e-07 60.1 66 47.0
Oeu055316.1 Olea europaea HOM05D000036 ORTHO05D000095 1.6e-07 59.7 86 36.0
Sabra06G0105600 Salix brachista HOM05D000036 ORTHO05D000095 1.6e-07 59.7 72 40.3
RcHm_v2.0_Chr2g0096461 Rosa chinensis HOM05D000036 ORTHO05D000095 2.0e-07 59.3 71 42.3
VMungo1215G0029 Vigna mungo HOM05D000036 ORTHO05D000095 2.0e-07 59.3 71 42.3
Aqoxy7G04187 Aquilegia oxysepala HOM05D000036 ORTHO05D000095 2.7e-07 58.9 76 38.2
unitig_578.g16401 Utricularia gibba HOM05D000036 ORTHO05D000095 2.7e-07 58.9 83 36.1
EL10Ac8g18956 Beta vulgaris HOM05D000036 ORTHO05D000095 7.7e-07 57.4 70 41.4
arahy.Tifrunner.gnm1.ann1.42QIIL Arachis hypogaea HOM05D000036 ORTHO05D000095 1.0e-06 57.0 74 41.9
arahy.Tifrunner.gnm1.ann1.HLP03A Arachis hypogaea HOM05D000036 ORTHO05D000095 1.0e-06 57.0 74 41.9
ClCG10G000050 Citrullus lanatus HOM05D000036 ORTHO05D000095 1.3e-06 56.6 68 42.6
AT4G33220 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 1.7e-06 56.2 68 42.6
CARHR241260 Cardamine hirsuta HOM05D000036 ORTHO05D000095 1.7e-06 56.2 68 41.2
Cfa002930 Carpinus fangiana HOM05D000036 ORTHO05D000095 1.7e-06 56.2 68 44.1
Phvul.003G126500 Phaseolus vulgaris HOM05D000036 ORTHO05D000095 1.7e-06 56.2 71 39.4
BcaC01g02103 Brassica carinata HOM05D000036 ORTHO05D000095 2.3e-06 55.8 77 36.4
AUR62028333 Chenopodium quinoa HOM05D000036 ORTHO05D000095 2.3e-06 55.8 88 35.2
Lj7C693T29 Lonicera japonica HOM05D000036 ORTHO05D000095 2.3e-06 55.8 77 40.3
BolC3t19101H Brassica oleracea HOM05D000036 ORTHO05D000095 2.9e-06 55.5 76 36.8
Carub.0007s0724 Capsella rubella HOM05D000036 ORTHO05D000095 2.9e-06 55.5 68 39.7
AT3G43270 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 3.8e-06 55.1 74 33.8
TWI32G0294 Tripterygium wilfordii HOM05D000036 ORTHO05D000095 5.0e-06 54.7 71 40.8
Thhalv10024900m.g Eutrema salsugineum HOM05D000036 ORTHO05D000095 6.6e-06 54.3 68 41.2
Sp5g17880 Schrenkiella parvula HOM05D000036 ORTHO05D000095 6.6e-06 54.3 80 32.5
Sed0025927 Sechium edule HOM05D000036 ORTHO05D000095 6.6e-06 54.3 74 41.9


User provided reference genes

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