Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold56G19931 Striga asiatica HOM05D010852 ORTHO05D002376 1.8e-262 908.7 453 100.0
SGA_v2.0_scaffold49G18177 Striga asiatica HOM05D010852 ORTHO05D002376 1.0e-135 487.6 430 64.4
SGA_v2.0_scaffold26G11253 Striga asiatica HOM05D010852 ORTHO05D002376 1.2e-93 347.8 405 51.6
SGA_v2.0_scaffold82G26258 Striga asiatica HOM05D010852 ORTHO05D002376 1.1e-81 308.1 316 59.8
SGA_v2.0_scaffold237G43840 Striga asiatica HOM05D010852 ORTHO05D002376 6.8e-76 288.9 451 37.9
SGA_v2.0_scaffold59G20735 Striga asiatica HOM05D010852 ORTHO05D002376 2.2e-66 257.3 475 34.1
SGA_v2.0_scaffold250G44995 Striga asiatica HOM05D010852 ORTHO05D002376 2.9e-66 256.9 483 34.0
SGA_v2.0_scaffold29G12331 Striga asiatica HOM05D010852 ORTHO05D002376 1.2e-51 208.4 412 32.8
SGA_v2.0_scaffold21G09523 Striga asiatica HOM05D001047 ORTHO05D000768 4.5e-43 179.9 142 71.1
SGA_v2.0_scaffold167G38409 Striga asiatica HOM05D010852 ORTHO05D002376 1.3e-34 151.8 319 32.3
SGA_v2.0_scaffold237G43867 Striga asiatica HOM05D010852 ORTHO05D002376 1.9e-33 147.9 241 34.0
SGA_v2.0_scaffold244G44377 Striga asiatica HOM05D010852 ORTHO05D002376 9.3e-33 145.6 170 42.4
SGA_v2.0_scaffold221G42656 Striga asiatica HOM05D010852 ORTHO05D002376 1.3e-26 125.2 181 38.1
arahy.Tifrunner.gnm1.ann1.Y0MAT2 Arachis hypogaea HOM05D002441 ORTHO05D002376 2.8e-21 107.5 232 26.7
arahy.Tifrunner.gnm1.ann1.8R9H6F Arachis hypogaea HOM05D002441 ORTHO05D002376 8.2e-21 105.9 233 26.2
arahy.Tifrunner.gnm1.ann1.8J8DAZ Arachis hypogaea HOM05D002441 ORTHO05D002376 1.1e-20 105.5 219 27.9
arahy.Tifrunner.gnm1.ann1.I5QAZJ Arachis hypogaea HOM05D002441 ORTHO05D002376 5.3e-20 103.2 232 26.3
arahy.Tifrunner.gnm1.ann1.M21JEJ Arachis hypogaea HOM05D002441 ORTHO05D002376 6.9e-20 102.8 420 23.6
arahy.Tifrunner.gnm1.ann1.11NDG0 Arachis hypogaea HOM05D002441 ORTHO05D002376 9.1e-20 102.4 233 26.6
arahy.Tifrunner.gnm1.ann1.40UDPE Arachis hypogaea HOM05D002441 ORTHO05D002376 9.1e-20 102.4 233 26.6
arahy.Tifrunner.gnm1.ann1.FKF8NN Arachis hypogaea HOM05D002441 ORTHO05D002376 9.1e-20 102.4 233 26.6
arahy.Tifrunner.gnm1.ann1.G1FX5D Arachis hypogaea HOM05D002441 ORTHO05D002376 9.1e-20 102.4 233 26.6
arahy.Tifrunner.gnm1.ann1.HTKL5C Arachis hypogaea HOM05D002441 ORTHO05D002376 9.1e-20 102.4 233 26.6
arahy.Tifrunner.gnm1.ann1.IQTA4G Arachis hypogaea HOM05D002441 ORTHO05D002376 9.1e-20 102.4 233 26.6
arahy.Tifrunner.gnm1.ann1.PWRV1I Arachis hypogaea HOM05D002441 ORTHO05D002376 9.1e-20 102.4 233 26.6
arahy.Tifrunner.gnm1.ann1.AFNT1S Arachis hypogaea HOM05D002441 ORTHO05D002376 2.0e-19 101.3 233 26.6
SGA_v2.0_scaffold38G15017 Striga asiatica HOM05D026572 ORTHO05D002376 1.0e-18 99.0 248 28.6
arahy.Tifrunner.gnm1.ann1.PUQ8PF Arachis hypogaea HOM05D002441 ORTHO05D002376 2.9e-18 97.4 271 23.6
arahy.Tifrunner.gnm1.ann1.481FMC Arachis hypogaea HOM05D002441 ORTHO05D002376 8.5e-18 95.9 211 27.5
arahy.Tifrunner.gnm1.ann1.0SIM4H Arachis hypogaea HOM05D002441 ORTHO05D002376 1.9e-17 94.7 211 27.0
arahy.Tifrunner.gnm1.ann1.H67YCB Arachis hypogaea HOM05D002441 ORTHO05D002376 2.5e-17 94.4 171 31.0
arahy.Tifrunner.gnm1.ann1.5RWV2W Arachis hypogaea HOM05D002441 ORTHO05D002376 2.7e-16 90.9 179 29.6
arahy.Tifrunner.gnm1.ann1.YP63XJ Arachis hypogaea HOM05D002441 ORTHO05D002376 2.7e-16 90.9 179 29.6
Nitab4.5_0026419g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 2.7e-16 90.9 170 28.8
arahy.Tifrunner.gnm1.ann1.36ZJIB Arachis hypogaea HOM05D002441 ORTHO05D002376 3.6e-16 90.5 175 28.6
arahy.Tifrunner.gnm1.ann1.40YIIT Arachis hypogaea HOM05D008664 ORTHO05D000174 1.4e-15 88.6 417 22.8
Medtr2g048560 Medicago truncatula HOM05D000353 ORTHO05D000174 1.8e-15 88.2 420 24.5
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 5.1e-15 86.7 453 22.5
Nitab4.5_0000992g0110 Nicotiana tabacum HOM05D002441 ORTHO05D002376 6.7e-15 86.3 181 27.6
arahy.Tifrunner.gnm1.ann1.7R55CH Arachis hypogaea HOM05D008664 ORTHO05D000174 1.1e-14 85.5 431 23.9
arahy.Tifrunner.gnm1.ann1.7L6ESV Arachis hypogaea HOM05D008664 ORTHO05D000174 1.5e-14 85.1 431 23.9
arahy.Tifrunner.gnm1.ann1.F76963 Arachis hypogaea HOM05D002441 ORTHO05D002376 4.4e-14 83.6 236 24.6
BcaB05g22552 Brassica carinata HOM05D000353 ORTHO05D000174 4.4e-14 83.6 466 21.2
Nitab4.5_0004863g0020 Nicotiana tabacum HOM05D002441 ORTHO05D002376 5.7e-14 83.2 201 26.9
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 5.7e-14 83.2 404 22.0
ECA248G1544 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.2e-13 81.3 272 25.0
Peaxi162Scf00706g00120 Petunia axillaris HOM05D002441 ORTHO05D002376 2.8e-13 80.9 187 28.3
Peaxi162Scf00006g02913 Petunia axillaris HOM05D002441 ORTHO05D002376 3.7e-13 80.5 217 27.2
arahy.Tifrunner.gnm1.ann1.U14C6K Arachis hypogaea HOM05D008664 ORTHO05D000174 4.8e-13 80.1 431 23.7
arahy.Tifrunner.gnm1.ann1.W2LWD3 Arachis hypogaea HOM05D008664 ORTHO05D000174 6.3e-13 79.7 408 23.5
Peaxi162Scf00103g00815 Petunia axillaris HOM05D002441 ORTHO05D002376 6.3e-13 79.7 245 26.1
arahy.Tifrunner.gnm1.ann1.0VM956 Arachis hypogaea HOM05D008664 ORTHO05D000174 1.4e-12 78.6 431 23.2
CAN.G1305.28 Capsicum annuum HOM05D002441 ORTHO05D002376 1.8e-12 78.2 177 27.7
Peaxi162Scf11584g00003 Petunia axillaris HOM05D002441 ORTHO05D002376 1.8e-12 78.2 188 28.7
Peaxi162Scf00347g00918 Petunia axillaris HOM05D002441 ORTHO05D002376 2.4e-12 77.8 187 27.3
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 4.1e-12 77.0 159 31.4
Nitab4.5_0002702g0050 Nicotiana tabacum HOM05D002441 ORTHO05D002376 5.3e-12 76.6 204 25.0
Peaxi162Scf00261g00059 Petunia axillaris HOM05D002441 ORTHO05D002376 5.3e-12 76.6 187 26.7
arahy.Tifrunner.gnm1.ann1.EPMR0G Arachis hypogaea HOM05D002441 ORTHO05D002376 9.1e-12 75.9 238 25.6
arahy.Tifrunner.gnm1.ann1.VX4W4R Arachis hypogaea HOM05D008664 ORTHO05D000174 1.2e-11 75.5 395 22.8
C06p15640 Brassica napus HOM05D000353 ORTHO05D000174 1.5e-11 75.1 450 20.9
Peaxi162Scf00010g01319 Petunia axillaris HOM05D002441 ORTHO05D002376 2.6e-11 74.3 184 26.1
SGA_v2.0_scaffold192G40512 Striga asiatica HOM05D010852 ORTHO05D002376 4.5e-11 73.6 86 44.2
Peaxi162Scf00429g00624 Petunia axillaris HOM05D002441 ORTHO05D002376 5.9e-11 73.2 180 27.2
arahy.Tifrunner.gnm1.ann1.G9S7AV Arachis hypogaea HOM05D002441 ORTHO05D002376 7.7e-11 72.8 146 26.0
Nitab4.5_0000305g0130 Nicotiana tabacum HOM05D002441 ORTHO05D008317 7.7e-11 72.8 128 34.4
A07p36560 Brassica napus HOM05D000353 ORTHO05D000174 1.7e-10 71.6 450 22.7
BcaB08g34954 Brassica carinata HOM05D000353 ORTHO05D000174 2.2e-10 71.2 459 21.6
SGA_v2.0_scaffold53G19301 Striga asiatica HOM05D027983 ORTHO05D002376 2.2e-10 71.2 84 45.2
CAN.G764.9 Capsicum annuum HOM05D002441 ORTHO05D002376 2.9e-10 70.9 109 31.2
LjContig00141g0027033 Lotus japonicus HOM05D007499 ORTHO05D000174 2.9e-10 70.9 428 20.8
SGA_v2.0_scaffold49G18365 Striga asiatica HOM05D024561 ORTHO05D002376 6.5e-10 69.7 255 22.7
DCAR_025622 Daucus carota HOM05D012849 ORTHO05D000065 8.5e-10 69.3 123 31.7
ECA233G3201 Erigeron canadensis HOM05D000353 ORTHO05D000174 8.5e-10 69.3 434 20.7
arahy.Tifrunner.gnm1.ann1.39QWAJ Arachis hypogaea HOM05D008664 ORTHO05D000174 1.9e-09 68.2 252 22.2
LjContig00155g0001945 Lotus japonicus HOM05D000353 ORTHO05D000174 2.5e-09 67.8 376 19.7
CANSAT35G0321 Cannabis sativa HOM05D002907 ORTHO05D005554 4.2e-09 67.0 148 27.0
SGA_v2.0_scaffold127G34032 Striga asiatica HOM05D010852 ORTHO05D002376 4.2e-09 67.0 71 46.5
CANSAT01G3093 Cannabis sativa HOM05D002907 ORTHO05D005554 5.5e-09 66.6 148 27.0
Nitab4.5_0021602g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 5.5e-09 66.6 115 30.4
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 5.5e-09 66.6 134 28.4
CANSAT01G2740 Cannabis sativa HOM05D002907 ORTHO05D005554 7.2e-09 66.2 128 28.1
Nitab4.5_0003378g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 7.2e-09 66.2 162 24.7
SGA_v2.0_scaffold143G35813 Striga asiatica HOM05D027983 ORTHO05D002376 7.2e-09 66.2 84 41.7
SGA_v2.0_scaffold72G24053 Striga asiatica HOM05D027983 ORTHO05D002376 7.2e-09 66.2 84 41.7
DCAR_010369 Daucus carota HOM05D012849 ORTHO05D000065 9.4e-09 65.9 172 26.2
SGA_v2.0_scaffold241G44194 Striga asiatica HOM05D011787 ORTHO05D008317 1.6e-08 65.1 295 23.7
arahy.Tifrunner.gnm1.ann1.E8Q8VF Arachis hypogaea HOM05D008664 ORTHO05D000174 2.1e-08 64.7 415 22.9
TPR.G37532 Trifolium pratense HOM05D002090 ORTHO05D001923 2.1e-08 64.7 252 23.0
ECA232G0261 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.7e-08 63.5 471 20.2
Peaxi162Scf00385g00619 Petunia axillaris HOM05D002441 ORTHO05D002376 6.1e-08 63.2 170 25.3
ECA234G0608 Erigeron canadensis HOM05D000615 ORTHO05D000447 8.0e-08 62.8 329 21.0
Lj6g0004966 Lotus japonicus HOM05D011527 ORTHO05D009491 8.0e-08 62.8 163 27.6
ECA240G2426 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.0e-07 62.4 233 26.2
Lj1g0016702 Lotus japonicus HOM05D007499 ORTHO05D000174 1.0e-07 62.4 211 25.1
QL06p039579 Quercus lobata HOM05D002907 ORTHO05D000065 1.0e-07 62.4 101 29.7
Ah.02g127010 Amaranthus hybridus HOM05D000012 ORTHO05D001936 1.4e-07 62.0 162 27.8
SGA_v2.0_scaffold100G29549 Striga asiatica HOM05D000096 ORTHO05D000045 1.4e-07 62.0 84 42.9
arahy.Tifrunner.gnm1.ann1.UD52B8 Arachis hypogaea HOM05D008664 ORTHO05D000174 1.8e-07 61.6 358 21.5
BcaC06g36089 Brassica carinata HOM05D000353 ORTHO05D000174 1.8e-07 61.6 145 29.7
ECA240G4108 Erigeron canadensis HOM05D003964 ORTHO05D002376 3.0e-07 60.8 268 19.4
TPR.G21912 Trifolium pratense HOM05D000096 ORTHO05D000045 3.0e-07 60.8 197 23.4
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 3.9e-07 60.5 108 26.9
PSO675G3596 Papaver somniferum HOM05D002907 ORTHO05D013727 3.9e-07 60.5 198 27.3
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 3.9e-07 60.5 435 20.2
Ah.08g214270 Amaranthus hybridus HOM05D003964 ORTHO05D000174 6.7e-07 59.7 162 27.2
Nitab4.5_0010353g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 8.8e-07 59.3 120 27.5
Psat1g020520 Pisum sativum HOM05D012348 ORTHO05D012889 1.5e-06 58.5 108 29.6
C09p45320 Brassica napus HOM05D000353 ORTHO05D000174 2.0e-06 58.2 147 23.8
CAN.G1537.11 Capsicum annuum HOM05D002441 ORTHO05D002376 2.0e-06 58.2 129 27.9
Medtr4g040040 Medicago truncatula HOM05D011527 ORTHO05D000174 3.3e-06 57.4 112 33.9
Nitab4.5_0002025g0040 Nicotiana tabacum HOM05D002441 ORTHO05D002376 3.3e-06 57.4 132 24.2
Nitab4.5_0007040g0020 Nicotiana tabacum HOM05D002441 ORTHO05D002376 3.3e-06 57.4 218 20.6
SGA_v2.0_scaffold69G23109 Striga asiatica HOM05D011787 ORTHO05D008317 4.4e-06 57.0 95 32.6
Nitab4.5_0003787g0030 Nicotiana tabacum HOM05D002441 ORTHO05D002376 5.7e-06 56.6 96 26.0
CAN.G220.26 Capsicum annuum HOM05D002891 ORTHO05D002376 7.4e-06 56.2 131 26.7
Zm00001eb043670 Zea mays HOM05D008312 ORTHO05D010433 7.4e-06 56.2 128 27.3
A09p28970 Brassica napus HOM05D000353 ORTHO05D000174 9.7e-06 55.8 195 22.6
BraA09t38461Z Brassica rapa HOM05D000353 ORTHO05D000174 9.7e-06 55.8 175 23.4
CAN.G1212.9 Capsicum annuum HOM05D002441 ORTHO05D002376 9.7e-06 55.8 93 28.0
CAN.G411.8 Capsicum annuum HOM05D002441 ORTHO05D002376 9.7e-06 55.8 93 29.0
RcHm_v2.0_Chr2g0133251 Rosa chinensis HOM05D006849 ORTHO05D003348 9.7e-06 55.8 134 25.4
SGA_v2.0_scaffold335G49121 Striga asiatica HOM05D011787 ORTHO05D008317 9.7e-06 55.8 82 36.6
SGA_v2.0_scaffold335G49122 Striga asiatica HOM05D011787 ORTHO05D008317 9.7e-06 55.8 82 36.6


User provided reference genes

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