Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 1.1e-95 353.2 172 100.0
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 8.8e-16 87.8 59 78.0
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 2.2e-14 83.2 109 45.9
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 4.8e-14 82.0 73 58.9
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 8.2e-14 81.3 73 57.5
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 9.1e-13 77.8 73 54.8
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 9.1e-13 77.8 78 51.3
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 1.2e-12 77.4 72 56.9
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 3.4e-12 75.9 90 50.0
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 3.4e-12 75.9 61 63.9
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 5.9e-12 75.1 138 37.7
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 7.7e-12 74.7 86 51.2
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 1.0e-11 74.3 42 85.7
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 1.0e-11 74.3 42 85.7
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 1.0e-11 74.3 75 57.3
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.0e-11 74.3 42 85.7
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.3e-11 73.9 94 41.5
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 1.3e-11 73.9 46 76.1
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 1.3e-11 73.9 64 64.1
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 1.7e-11 73.6 54 70.4
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 1.7e-11 73.6 42 83.3
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 1.7e-11 73.6 88 52.3
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 1.7e-11 73.6 42 83.3
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 2.2e-11 73.2 42 83.3
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 2.9e-11 72.8 42 83.3
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 2.9e-11 72.8 122 41.8
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 3.8e-11 72.4 65 56.9
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 3.8e-11 72.4 42 81.0
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 3.8e-11 72.4 46 76.1
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 3.8e-11 72.4 42 81.0
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 6.5e-11 71.6 42 81.0
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 6.5e-11 71.6 42 81.0
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 6.5e-11 71.6 61 57.4
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.5e-11 71.6 42 81.0
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 8.5e-11 71.2 53 66.0
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 8.5e-11 71.2 44 77.3
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 8.5e-11 71.2 42 81.0
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 8.5e-11 71.2 42 81.0
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 8.5e-11 71.2 42 83.3
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 8.5e-11 71.2 42 83.3
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 1.1e-10 70.9 41 85.4
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 1.1e-10 70.9 41 85.4
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.1e-10 70.9 41 85.4
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 1.1e-10 70.9 41 85.4
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 1.1e-10 70.9 41 85.4
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.1e-10 70.9 92 46.7
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 1.1e-10 70.9 41 85.4
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 1.1e-10 70.9 42 81.0
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 1.4e-10 70.5 89 49.4
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 1.4e-10 70.5 94 46.8
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.4e-10 70.5 42 78.6
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 1.9e-10 70.1 55 67.3
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 1.9e-10 70.1 41 82.9
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 1.9e-10 70.1 41 82.9
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 1.9e-10 70.1 41 82.9
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 1.9e-10 70.1 82 50.0
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 1.9e-10 70.1 42 81.0
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 1.9e-10 70.1 61 57.4
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 1.9e-10 70.1 41 82.9
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 1.9e-10 70.1 41 82.9
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 1.9e-10 70.1 41 82.9
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 1.9e-10 70.1 42 78.6
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 2.5e-10 69.7 40 85.0
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 2.5e-10 69.7 45 73.3
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.5e-10 69.7 40 85.0
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 2.5e-10 69.7 42 78.6
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 2.5e-10 69.7 118 39.8
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 2.5e-10 69.7 42 78.6
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 2.5e-10 69.7 41 82.9
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 2.5e-10 69.7 40 85.0
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 3.2e-10 69.3 42 76.2
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 3.2e-10 69.3 42 76.2
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 3.2e-10 69.3 85 49.4
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 3.2e-10 69.3 41 82.9
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 3.2e-10 69.3 41 82.9
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 4.2e-10 68.9 50 70.0
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 4.2e-10 68.9 41 80.5
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 4.2e-10 68.9 41 80.5
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 4.2e-10 68.9 41 82.9
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 4.2e-10 68.9 42 78.6
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 5.5e-10 68.6 68 55.9
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 5.5e-10 68.6 78 51.3
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 5.5e-10 68.6 78 52.6
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 5.5e-10 68.6 41 80.5
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 5.5e-10 68.6 41 80.5
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 5.5e-10 68.6 41 80.5
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 5.5e-10 68.6 80 52.5
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 5.5e-10 68.6 41 80.5
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 5.5e-10 68.6 42 76.2
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 7.2e-10 68.2 41 78.0
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 7.2e-10 68.2 89 44.9
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 7.2e-10 68.2 40 82.5
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 7.2e-10 68.2 41 82.9
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 7.2e-10 68.2 41 82.9
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 7.2e-10 68.2 41 80.5
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 7.2e-10 68.2 40 82.5
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 7.2e-10 68.2 42 73.8
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 9.4e-10 67.8 81 51.9
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 9.4e-10 67.8 42 76.2
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 1.6e-09 67.0 51 68.6
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 1.6e-09 67.0 41 80.5
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.6e-09 67.0 41 80.5
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.6e-09 67.0 41 80.5
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.6e-09 67.0 41 80.5
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.6e-09 67.0 41 80.5
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 1.6e-09 67.0 41 80.5
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 2.1e-09 66.6 49 69.4
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 2.1e-09 66.6 41 78.0
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 2.1e-09 66.6 40 80.0
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 2.7e-09 66.2 42 73.8
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 3.6e-09 65.9 41 78.0
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 3.6e-09 65.9 41 78.0
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 3.6e-09 65.9 41 78.0
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 3.6e-09 65.9 39 82.1
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 4.7e-09 65.5 50 64.0
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 6.1e-09 65.1 41 75.6
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 6.1e-09 65.1 41 75.6
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 6.1e-09 65.1 41 75.6
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 1.0e-08 64.3 41 75.6
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 1.0e-08 64.3 99 42.4
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 1.0e-08 64.3 41 78.0
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 1.4e-08 63.9 42 71.4
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 3.0e-08 62.8 41 70.7
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 3.0e-08 62.8 72 47.2
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 3.9e-08 62.4 41 73.2
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 3.9e-08 62.4 77 42.9
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 5.2e-08 62.0 41 73.2
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 5.2e-08 62.0 77 42.9
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 1.5e-07 60.5 47 63.8
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 2.0e-07 60.1 92 39.1
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 2.6e-07 59.7 40 70.0
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 7.4e-07 58.2 41 68.3
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 9.7e-07 57.8 41 68.3
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 1.7e-06 57.0 41 61.0


User provided reference genes

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