Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 5.0e-154 547.7 279 100.0
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 1.6e-112 409.8 368 64.7
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 5.9e-86 321.6 363 49.9
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 9.1e-79 297.7 353 49.9
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 3.7e-72 275.8 363 45.7
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 1.0e-69 267.7 369 44.4
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.2e-67 260.8 356 43.8
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 1.4e-66 257.3 356 45.5
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.3e-66 256.5 356 44.4
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 3.0e-66 256.1 206 62.6
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.1e-65 254.2 356 45.2
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 2.0e-65 253.4 357 44.0
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 2.0e-65 253.4 356 44.9
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 9.7e-65 251.1 360 43.1
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 1.3e-64 250.8 383 43.1
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.7e-64 250.4 362 42.0
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.7e-64 250.4 358 43.3
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 8.2e-64 248.1 356 44.4
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.0e-62 243.4 367 42.5
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 3.5e-62 242.7 357 40.1
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 4.5e-62 242.3 364 41.5
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 1.3e-61 240.7 364 40.7
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 1.7e-61 240.4 362 43.1
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 2.9e-61 239.6 206 59.2
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 2.9e-61 239.6 362 41.7
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 8.5e-61 238.0 367 42.2
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.9e-60 236.9 366 40.4
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 1.6e-59 233.8 360 41.4
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.6e-59 233.8 215 57.2
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 2.1e-59 233.4 365 39.7
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 2.7e-59 233.0 356 42.4
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 4.7e-59 232.3 215 56.7
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.4e-58 230.7 206 57.8
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.8e-58 230.3 364 40.9
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 3.0e-58 229.6 359 41.2
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 4.0e-58 229.2 297 45.1
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.2e-57 227.6 206 59.2
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.0e-57 226.9 215 55.8
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 2.6e-57 226.5 359 39.8
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 3.3e-57 226.1 362 39.5
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 4.4e-57 225.7 360 40.8
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.4e-57 225.7 215 55.3
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 5.7e-57 225.3 357 40.1
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 1.3e-56 224.2 356 42.4
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 2.2e-56 223.4 361 41.0
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 2.2e-56 223.4 376 39.1
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 2.8e-56 223.0 360 40.0
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 4.8e-56 222.2 356 42.1
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 6.3e-56 221.9 215 54.9
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 8.2e-56 221.5 363 40.5
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.1e-55 221.1 361 40.4
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.4e-55 220.7 206 55.3
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 1.8e-55 220.3 359 41.2
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 2.4e-55 219.9 359 39.3
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 7.0e-55 218.4 206 55.8
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 7.0e-55 218.4 206 55.8
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 2.7e-54 216.5 205 54.6
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 4.5e-54 215.7 206 53.4
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 7.7e-54 214.9 357 38.4
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 1.7e-53 213.8 365 38.4
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 2.9e-53 213.0 361 38.0
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 3.8e-53 212.6 206 53.9
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 5.0e-53 212.2 206 54.9
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 3.2e-52 209.5 219 53.0
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 4.2e-52 209.1 206 54.4
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 4.2e-52 209.1 364 37.6
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.1e-51 205.3 267 48.3
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 8.0e-51 204.9 206 53.4
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 4.0e-50 202.6 207 55.6
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 5.2e-50 202.2 365 36.4
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 7.5e-49 198.4 334 41.9
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 2.2e-48 196.8 205 49.3
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 2.8e-48 196.4 208 52.4
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 1.8e-47 193.7 370 37.6
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 4.1e-47 192.6 205 49.8
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 1.6e-46 190.7 208 48.6
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 2.7e-46 189.9 205 50.2
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.7e-46 189.9 225 47.6
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.0e-45 188.0 224 47.3
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 1.7e-45 187.2 205 48.8
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 5.0e-45 185.7 205 48.3
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 8.6e-45 184.9 356 34.8
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.1e-44 184.5 267 42.7
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 9.5e-44 181.4 206 49.0
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.0e-42 177.9 208 47.1
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.4e-42 177.6 237 44.3
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 1.8e-42 177.2 205 46.3
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 1.8e-42 177.2 208 48.6
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.0e-42 176.0 208 46.6
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 6.8e-42 175.3 219 47.0
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 6.8e-42 175.3 205 46.3
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 1.2e-41 174.5 205 47.3
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 2.0e-41 173.7 205 47.3
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 3.4e-41 172.9 205 47.3
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 3.4e-41 172.9 205 47.3
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 3.4e-41 172.9 205 47.3
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 9.8e-41 171.4 205 47.3
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 2.8e-40 169.9 205 46.8
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 1.2e-38 164.5 205 45.9
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.2e-38 164.5 315 36.2
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.9e-36 157.1 299 36.1
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 3.0e-34 149.8 373 30.8
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.7e-33 145.6 206 41.7
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.1e-27 127.1 164 44.5
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 5.2e-26 122.5 214 37.4
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.0e-25 120.6 162 43.8
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.8e-25 118.2 154 42.9
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 4.9e-24 115.9 137 47.4
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 4.9e-24 115.9 137 47.4
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.7e-21 107.5 279 32.6
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 8.6e-21 105.1 118 47.5
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 6.8e-18 95.5 214 33.2
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 3.4e-17 93.2 244 29.5
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.4e-17 93.2 210 33.8
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.1e-15 88.2 108 47.2
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 3.5e-14 83.2 354 25.4
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 6.6e-13 79.0 62 62.9
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.3e-12 75.5 85 45.9
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 7.3e-12 75.5 100 44.0
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.4e-10 71.2 205 31.2
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 2.4e-07 60.5 44 68.2
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 1.6e-06 57.8 60 48.3
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.7e-06 57.0 51 52.9
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 3.5e-06 56.6 60 48.3
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 7.8e-06 55.5 34 73.5


User provided reference genes

Program Settings