Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.0e-143 513.5 266 100.0
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.1e-22 111.3 273 32.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 7.2e-17 92.0 382 27.0
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.0e-15 88.2 335 28.4
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.0e-14 84.0 406 26.4
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.6e-14 83.6 381 26.2
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 4.4e-14 82.8 365 29.0
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.4e-14 82.8 368 26.6
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 7.4e-14 82.0 406 25.9
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.4e-14 82.0 386 25.6
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.7e-13 80.9 152 37.5
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.7e-13 80.9 152 37.5
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.7e-13 80.9 243 32.5
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.7e-13 80.9 271 28.8
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 3.7e-13 79.7 156 35.9
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.3e-13 79.0 406 26.1
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.2e-13 78.6 384 26.6
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 8.2e-13 78.6 272 28.7
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.1e-12 78.2 378 27.0
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 3.1e-12 76.6 153 34.6
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.1e-12 76.3 306 27.8
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 4.1e-12 76.3 393 25.4
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.3e-12 75.9 220 31.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 5.3e-12 75.9 388 26.8
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.6e-11 74.3 164 36.0
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.6e-11 74.3 383 25.8
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.5e-11 72.8 161 30.4
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.0e-10 71.6 122 41.0
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.0e-10 71.6 382 23.8
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.0e-10 71.6 382 25.1
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.3e-10 71.2 159 35.2
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.2e-10 70.5 138 33.3
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.2e-10 70.5 146 34.9
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.2e-10 70.5 388 24.7
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 2.2e-10 70.5 59 62.7
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.9e-10 70.1 316 26.6
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 2.9e-10 70.1 326 26.7
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.9e-10 70.1 164 32.3
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 2.9e-10 70.1 141 37.6
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.8e-10 69.7 397 25.4
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.8e-10 69.7 163 33.7
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 3.8e-10 69.7 383 23.5
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 3.8e-10 69.7 383 23.5
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 5.0e-10 69.3 388 24.7
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 5.0e-10 69.3 322 28.6
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 5.0e-10 69.3 114 40.4
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 6.5e-10 68.9 155 34.2
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 6.5e-10 68.9 161 32.9
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 6.5e-10 68.9 151 35.1
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 8.5e-10 68.6 142 32.4
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 8.5e-10 68.6 152 31.6
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 8.5e-10 68.6 153 32.7
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 8.5e-10 68.6 395 24.6
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 8.5e-10 68.6 378 24.6
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 1.1e-09 68.2 156 32.1
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.1e-09 68.2 154 33.8
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.1e-09 68.2 160 31.2
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.1e-09 68.2 165 29.1
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.1e-09 68.2 59 61.0
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.1e-09 68.2 161 31.7
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.5e-09 67.8 151 34.4
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.9e-09 67.4 152 35.5
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.9e-09 67.4 129 38.0
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.9e-09 67.4 384 25.5
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 2.5e-09 67.0 297 27.9
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 2.5e-09 67.0 159 30.2
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.5e-09 67.0 146 30.1
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 2.5e-09 67.0 161 31.1
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 2.5e-09 67.0 387 27.1
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.2e-09 66.6 153 34.6
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 4.2e-09 66.2 131 38.2
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 4.2e-09 66.2 143 32.9
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 4.2e-09 66.2 151 32.5
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 5.5e-09 65.9 56 60.7
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 5.5e-09 65.9 160 30.0
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 7.2e-09 65.5 384 25.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 7.2e-09 65.5 153 33.3
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 9.4e-09 65.1 145 34.5
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 9.4e-09 65.1 145 34.5
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 9.4e-09 65.1 141 34.0
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 9.4e-09 65.1 134 38.1
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.2e-08 64.7 326 25.8
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.2e-08 64.7 153 33.3
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.2e-08 64.7 137 33.6
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.2e-08 64.7 164 31.1
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.6e-08 64.3 153 32.0
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.6e-08 64.3 169 32.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.1e-08 63.9 133 32.3
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.1e-08 63.9 153 32.0
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.1e-08 63.9 158 32.3
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 2.1e-08 63.9 166 31.3
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 3.6e-08 63.2 125 33.6
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 4.7e-08 62.8 153 31.4
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.7e-08 62.8 145 33.1
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.7e-08 62.8 141 30.5
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 6.1e-08 62.4 155 31.0
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.0e-07 61.6 401 23.7
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.0e-07 61.6 314 27.1
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 1.0e-07 61.6 311 26.0
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.0e-07 61.6 171 32.7
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.4e-07 61.2 157 33.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.4e-07 61.2 49 65.3
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.4e-07 61.2 148 31.8
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.4e-07 61.2 362 24.0
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.8e-07 60.8 153 34.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 3.0e-07 60.1 139 30.2
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 3.0e-07 60.1 142 33.1
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 3.0e-07 60.1 171 32.7
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 5.2e-07 59.3 151 31.8
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 5.2e-07 59.3 108 34.3
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 6.7e-07 58.9 144 34.7
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 6.7e-07 58.9 145 30.3
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 6.7e-07 58.9 115 35.7
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 6.7e-07 58.9 381 25.7
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 6.7e-07 58.9 417 23.3
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 6.7e-07 58.9 194 30.9
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.8e-07 58.5 147 32.0
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 8.8e-07 58.5 169 30.2
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 8.8e-07 58.5 348 22.7
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 8.8e-07 58.5 148 31.8
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.2e-06 58.2 55 56.4
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-06 58.2 200 28.5
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 1.5e-06 57.8 320 26.9
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.5e-06 57.8 159 29.6
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.5e-06 57.8 193 31.1
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.0e-06 57.4 194 30.9
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.6e-06 57.0 167 31.7
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 3.3e-06 56.6 161 31.7
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 4.4e-06 56.2 165 29.1
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 5.7e-06 55.8 74 47.3
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 7.5e-06 55.5 126 31.0
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 9.7e-06 55.1 226 25.7


User provided reference genes

Program Settings