Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold555G52910 Striga asiatica HOM05D024566 ORTHO05D020930 0.0e+00 1443.3 768 100.0
SGA_v2.0_scaffold555G52911 Striga asiatica HOM05D024566 ORTHO05D020930 2.5e-139 500.4 271 94.5
Zm00001eb033330 Zea mays HOM05D024566 ORTHO05D020930 6.8e-76 289.7 205 67.8
Eucgr.D01936 Eucalyptus grandis HOM05D003389 ORTHO05D003917 1.8e-20 105.5 247 31.6
SGA_v2.0_scaffold1008G53784 Striga asiatica HOM05D024566 ORTHO05D020930 7.6e-19 100.1 50 96.0
PRCOL_00006333 Prasinoderma coloniale HOM05D003389 ORTHO05D003917 1.7e-18 99.0 282 28.4
Sed0009929 Sechium edule HOM05D003389 ORTHO05D003917 5.5e-17 94.0 145 40.7
Manes.01G069600 Manihot esculenta HOM05D003389 ORTHO05D003917 9.3e-17 93.2 174 35.6
CsaV3_5G003350 Cucumis sativus L. HOM05D003389 ORTHO05D003917 1.2e-16 92.8 129 42.6
Gohir.A08G177400 Gossypium hirsutum HOM05D003389 ORTHO05D003917 4.6e-16 90.9 129 41.9
Gohir.D08G195800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 4.6e-16 90.9 129 41.9
Gorai.004G206500 Gossypium raimondii HOM05D003389 ORTHO05D003917 4.6e-16 90.9 129 41.9
Sed0023838 Sechium edule HOM05D003389 ORTHO05D003917 6.0e-16 90.5 129 41.9
QL12p016621 Quercus lobata HOM05D003389 ORTHO05D003917 7.9e-16 90.1 174 33.3
EL10Ac5g12710 Beta vulgaris HOM05D003389 ORTHO05D003917 1.0e-15 89.7 129 41.1
Nn1g01292 Nelumbo nucifera HOM05D003389 ORTHO05D003917 1.0e-15 89.7 129 41.1
arahy.Tifrunner.gnm1.ann1.18T4MA Arachis hypogaea HOM05D003389 ORTHO05D003917 1.3e-15 89.4 161 37.9
arahy.Tifrunner.gnm1.ann1.HGX6IC Arachis hypogaea HOM05D003389 ORTHO05D003917 1.3e-15 89.4 161 37.9
Os06g0721600 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 1.3e-15 89.4 238 27.3
Os06g0723400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 1.3e-15 89.4 238 27.3
Zm00001eb227790 Zea mays HOM05D003389 ORTHO05D003917 1.3e-15 89.4 129 40.3
Carub.0006s3095 Capsella rubella HOM05D003389 ORTHO05D003917 1.8e-15 89.0 174 33.9
AUR62017315 Chenopodium quinoa HOM05D003389 ORTHO05D003917 1.8e-15 89.0 129 40.3
Os06g0712400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D003917 1.8e-15 89.0 129 39.5
CARHR254440 Cardamine hirsuta HOM05D003389 ORTHO05D003917 2.3e-15 88.6 174 33.9
AUR62010575 Chenopodium quinoa HOM05D003389 ORTHO05D003917 2.3e-15 88.6 129 40.3
Duzib068G0926 Durio zibethinus HOM05D003389 ORTHO05D003917 2.3e-15 88.6 129 41.1
Aa31LG9G10590 Aethionema arabicum HOM05D003389 ORTHO05D003917 3.0e-15 88.2 174 34.5
BcaB01g01683 Brassica carinata HOM05D003389 ORTHO05D003917 3.0e-15 88.2 129 40.3
BcaC04g21168 Brassica carinata HOM05D003389 ORTHO05D003917 3.0e-15 88.2 145 36.6
A09p27250 Brassica napus HOM05D003389 ORTHO05D003917 3.0e-15 88.2 129 40.3
C09p34580 Brassica napus HOM05D003389 ORTHO05D003917 3.0e-15 88.2 145 36.6
BolC9t56305H Brassica oleracea HOM05D003389 ORTHO05D003917 3.0e-15 88.2 145 36.6
Duzib205G0992 Durio zibethinus HOM05D003389 ORTHO05D003917 3.0e-15 88.2 129 41.1
Os07g0258100 Oryza sativa ssp. japonica HOM05D024566 ORTHO05D020930 3.9e-15 87.8 363 26.4
Psat2g181120 Pisum sativum HOM05D003389 ORTHO05D003917 3.9e-15 87.8 178 34.3
Sp6g05610 Schrenkiella parvula HOM05D003389 ORTHO05D003917 3.9e-15 87.8 174 33.9
AT4G11860 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 5.1e-15 87.4 174 33.9
Duzib084G0706 Durio zibethinus HOM05D003389 ORTHO05D003917 5.1e-15 87.4 129 41.1
Gohir.A09G193500 Gossypium hirsutum HOM05D003389 ORTHO05D003917 5.1e-15 87.4 143 39.2
Gohir.D09G187700 Gossypium hirsutum HOM05D003389 ORTHO05D003917 5.1e-15 87.4 143 39.2
Gorai.006G210500 Gossypium raimondii HOM05D003389 ORTHO05D003917 5.1e-15 87.4 143 39.2
SalBow1G6995 Salvia bowleyana HOM05D003262 ORTHO05D003917 5.1e-15 87.4 129 40.3
BraA09t38293Z Brassica rapa HOM05D003389 ORTHO05D003917 6.7e-15 87.0 129 39.5
Cfa012079 Carpinus fangiana HOM05D003389 ORTHO05D003917 6.7e-15 87.0 174 33.9
PSO478G1498 Papaver somniferum HOM05D003389 ORTHO05D003917 6.7e-15 87.0 174 32.8
Hund11535 Selenicereus undatus HOM05D003389 ORTHO05D003917 6.7e-15 87.0 129 41.1
AagrBONN_evm.TU.Sc2ySwM_228.3893 Anthoceros agrestis HOM05D003389 ORTHO05D003917 8.7e-15 86.7 172 32.6
Thhalv10028490m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 8.7e-15 86.7 129 40.3
PGR031G2775 Punica granatum HOM05D003389 ORTHO05D003917 8.7e-15 86.7 129 39.5
RcHm_v2.0_Chr1g0379891 Rosa chinensis HOM05D003389 ORTHO05D003917 8.7e-15 86.7 156 36.5
CiPaw.12G100200 Carya illinoinensis HOM05D003389 ORTHO05D003917 1.1e-14 86.3 163 35.6
ECA240G1577 Erigeron canadensis HOM05D003389 ORTHO05D003917 1.1e-14 86.3 174 32.8
Carub.0007s1831 Capsella rubella HOM05D003389 ORTHO05D003917 1.5e-14 85.9 299 25.8
Ciclev10019075m.g Citrus clementina HOM05D003389 ORTHO05D003917 1.5e-14 85.9 129 40.3
FvH4_5g01250 Fragaria vesca HOM05D003389 ORTHO05D003917 1.5e-14 85.9 129 39.5
FAN04G3242 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.5e-14 85.9 129 39.5
FAN08G2451 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.5e-14 85.9 129 39.5
FAN13G0159 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.5e-14 85.9 129 39.5
Medtr5g011090 Medicago truncatula HOM05D003389 ORTHO05D003917 1.5e-14 85.9 179 34.1
Potri.003G119800 Populus trichocarpa HOM05D003389 ORTHO05D003917 1.5e-14 85.9 129 40.3
TAR636G1874 Trochodendron aralioides HOM05D003389 ORTHO05D003917 1.5e-14 85.9 129 38.8
Cpa.g.sc29.33 Carica papaya HOM05D003389 ORTHO05D003917 1.9e-14 85.5 129 39.5
Dinv37703 Davidia involucrata HOM05D003389 ORTHO05D003917 1.9e-14 85.5 172 36.0
Dinv39033 Davidia involucrata HOM05D003389 ORTHO05D003917 1.9e-14 85.5 161 37.3
FAN18G0817 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.9e-14 85.5 129 38.8
PSO782G1906 Papaver somniferum HOM05D003389 ORTHO05D003917 1.9e-14 85.5 174 32.2
Thecc.03G268500 Theobroma cacao HOM05D003389 ORTHO05D003917 1.9e-14 85.5 129 40.3
CDE04G0877 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 2.5e-14 85.1 148 35.8
unitig_699.g19759 Utricularia gibba HOM05D003389 ORTHO05D003917 2.5e-14 85.1 129 39.5
CiPaw.11G142600 Carya illinoinensis HOM05D003389 ORTHO05D003917 3.3e-14 84.7 129 39.5
Eucgr.D01937 Eucalyptus grandis HOM05D003389 ORTHO05D003917 3.3e-14 84.7 258 29.5
Gohir.A11G021100 Gossypium hirsutum HOM05D003389 ORTHO05D003917 3.3e-14 84.7 129 38.8
Manes.02G030300 Manihot esculenta HOM05D003389 ORTHO05D003917 3.3e-14 84.7 174 32.8
Potri.001G112300 Populus trichocarpa HOM05D003389 ORTHO05D003917 4.3e-14 84.3 129 39.5
CSS0021110 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 5.7e-14 84.0 129 39.5
CANSAT21G1884 Cannabis sativa HOM05D003389 ORTHO05D003917 5.7e-14 84.0 129 38.8
Glyma.01G214700 Glycine max HOM05D003389 ORTHO05D003917 5.7e-14 84.0 174 33.9
Gorai.007G022100 Gossypium raimondii HOM05D003389 ORTHO05D003917 5.7e-14 84.0 129 38.8
MD04G1069900 Malus domestica HOM05D003389 ORTHO05D003917 5.7e-14 84.0 129 39.5
Nn6g34315 Nelumbo nucifera HOM05D003389 ORTHO05D003917 5.7e-14 84.0 129 39.5
Nitab4.5_0008362g0010 Nicotiana tabacum HOM05D003389 ORTHO05D003917 5.7e-14 84.0 129 40.3
Ca_06667_v3 Cicer arietinum L. HOM05D003389 ORTHO05D003917 7.4e-14 83.6 161 34.8
Oeu001902.1 Olea europaea HOM05D003389 ORTHO05D003917 7.4e-14 83.6 129 39.5
Sabra03G0084000 Salix brachista HOM05D003389 ORTHO05D003917 7.4e-14 83.6 129 38.8
THA.LOC104806361 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 7.4e-14 83.6 129 39.5
THA.LOC104814202 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 7.4e-14 83.6 129 40.3
Atru.chr9.1507 Acer truncatum HOM05D003389 ORTHO05D003917 9.6e-14 83.2 131 38.9
Migut.A00906 Erythranthe guttata HOM05D003389 ORTHO05D003917 9.6e-14 83.2 129 37.2
Pp3c12_2860 Physcomitrium patens HOM05D003389 ORTHO05D003917 9.6e-14 83.2 130 36.2
Sopen08g028470 Solanum pennellii HOM05D003389 ORTHO05D003917 9.6e-14 83.2 129 41.1
PGSC0003DMG400022735 Solanum tuberosum HOM05D003389 ORTHO05D003917 9.6e-14 83.2 129 40.3
ATR0661G488 Amborella trichopoda HOM05D003389 ORTHO05D003917 1.3e-13 82.8 129 38.8
RcHm_v2.0_Chr7g0199771 Rosa chinensis HOM05D003389 ORTHO05D003917 1.3e-13 82.8 129 39.5
VMungo1215G1985 Vigna mungo HOM05D003389 ORTHO05D003917 1.3e-13 82.8 161 36.0
Glyma.11G027200 Glycine max HOM05D003389 ORTHO05D003917 1.6e-13 82.4 159 35.8
Lalb_Chr09g0324691 Lupinus albus HOM05D003389 ORTHO05D003917 1.6e-13 82.4 129 39.5
Phvul.002G153200 Phaseolus vulgaris HOM05D003389 ORTHO05D003917 1.6e-13 82.4 161 36.0
Sc07g0009480 Simmondsia chinensis HOM05D003389 ORTHO05D003917 1.6e-13 82.4 129 38.8
Lsat_1_v5_gn_6_10400 Lactuca sativa HOM05D003389 ORTHO05D003917 2.1e-13 82.0 129 39.5
HanXRQChr11g0336621 Helianthus annuus HOM05D003389 ORTHO05D003917 2.8e-13 81.6 129 38.8
MD06G1071400 Malus domestica HOM05D003389 ORTHO05D003917 2.8e-13 81.6 129 38.0
Peaxi162Scf00620g00617 Petunia axillaris HOM05D003389 ORTHO05D003917 2.8e-13 81.6 129 40.3
Sabra01G0085800 Salix brachista HOM05D003389 ORTHO05D003917 2.8e-13 81.6 129 39.5
ECA233G2019 Erigeron canadensis HOM05D003389 ORTHO05D003917 3.7e-13 81.3 129 38.0
HanXRQChr02g0043491 Helianthus annuus HOM05D003389 ORTHO05D003917 3.7e-13 81.3 121 34.7
TWI15G1193 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 3.7e-13 81.3 129 38.0
Ah.12g057800 Amaranthus hybridus HOM05D003389 ORTHO05D003917 4.8e-13 80.9 129 38.8
CAN.G981.56 Capsicum annuum HOM05D003389 ORTHO05D003917 4.8e-13 80.9 129 40.3
Prupe.5G088000 Prunus persica HOM05D003389 ORTHO05D003917 4.8e-13 80.9 129 38.8
TWI81G0612 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 4.8e-13 80.9 129 38.0
HPP92_022000 Vanilla planifolia HOM05D003389 ORTHO05D003917 4.8e-13 80.9 129 38.0
Actinidia05234 Actinidia chinensis HOM05D003389 ORTHO05D003917 6.3e-13 80.5 129 38.0
Cc08_g13790 Coffea canephora HOM05D003389 ORTHO05D003917 6.3e-13 80.5 129 40.3
Migut.E01161 Erythranthe guttata HOM05D003389 ORTHO05D003917 6.3e-13 80.5 129 37.2
SalBow6G3358 Salvia bowleyana HOM05D003389 ORTHO05D003917 6.3e-13 80.5 165 33.3
MBI11_g05095_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 8.2e-13 80.1 129 38.0
Hund14708 Selenicereus undatus HOM05D003389 ORTHO05D003917 1.1e-12 79.7 129 38.8
SEGI_34401 Sequoiadendron giganteum HOM05D003389 ORTHO05D003917 1.1e-12 79.7 129 37.2
SGA_v2.0_scaffold286G47125 Striga asiatica HOM05D003389 ORTHO05D003917 1.1e-12 79.7 161 33.5
GSVIVG01019881001 Vitis vinifera HOM05D003389 ORTHO05D003917 1.1e-12 79.7 129 39.5
SGA_v2.0_scaffold144G35980 Striga asiatica HOM05D003389 ORTHO05D003917 1.4e-12 79.3 129 39.5
Lj2g0004762 Lotus japonicus HOM05D003389 ORTHO05D003917 1.8e-12 79.0 129 36.4
Thhalv10027519m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 2.4e-12 78.6 129 37.2
Aqoxy5G03952 Aquilegia oxysepala HOM05D003389 ORTHO05D003917 3.1e-12 78.2 129 37.2
SMO367G0360 Selaginella moellendorffii HOM05D003389 ORTHO05D003917 3.1e-12 78.2 129 35.7
BcaNung01008 Brassica carinata HOM05D003389 ORTHO05D003917 5.3e-12 77.4 121 38.0
Sp7g21050 Schrenkiella parvula HOM05D003389 ORTHO05D003917 5.3e-12 77.4 124 36.3
Pp3c17_3230 Physcomitrium patens HOM05D003389 ORTHO05D003917 1.2e-11 76.3 129 34.9
Lsat_1_v5_gn_6_79100 Lactuca sativa HOM05D003389 ORTHO05D003917 2.0e-11 75.5 189 30.7
A01p14230 Brassica napus HOM05D003389 ORTHO05D003917 2.6e-11 75.1 123 35.8
BraA01t01370Z Brassica rapa HOM05D003389 ORTHO05D003917 2.6e-11 75.1 123 35.8
SHI13491 Sapria himalayana HOM05D003389 ORTHO05D003917 2.6e-11 75.1 143 32.9
Gohir.D11G020800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 7.6e-11 73.6 135 35.6
Aa31LG6G5010 Aethionema arabicum HOM05D003389 ORTHO05D003917 1.0e-10 73.2 121 36.4
FAN09G4798 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.3e-10 72.8 108 37.0
Actinidia14499 Actinidia chinensis HOM05D003389 ORTHO05D003917 2.2e-10 72.0 123 35.8
C01p17500 Brassica napus HOM05D003389 ORTHO05D003917 2.2e-10 72.0 139 34.5
Zm00001eb272510 Zea mays HOM05D003389 ORTHO05D003917 2.9e-10 71.6 88 45.5
PSO170G2389 Papaver somniferum HOM05D003389 ORTHO05D003917 3.8e-10 71.2 118 34.7
PSO302G0081 Papaver somniferum HOM05D003389 ORTHO05D003917 8.4e-10 70.1 118 34.7
Zm00001eb033290 Zea mays HOM05D003389 ORTHO05D003917 8.4e-10 70.1 124 35.5
BcaC09g51049 Brassica carinata HOM05D003389 ORTHO05D003917 1.1e-09 69.7 133 34.6
BolC1t01690H Brassica oleracea HOM05D003389 ORTHO05D003917 1.4e-09 69.3 134 34.3
ClCG01G003270 Citrullus lanatus HOM05D003389 ORTHO05D003917 3.2e-09 68.2 137 30.7
Migut.A00905 Erythranthe guttata HOM05D003389 ORTHO05D003917 3.2e-09 68.2 191 27.7
AL7G30560 Arabidopsis lyrata HOM05D003389 ORTHO05D003917 4.2e-09 67.8 121 34.7
MELO3C005619.2 Cucumis melo HOM05D003389 ORTHO05D003917 7.2e-09 67.0 121 33.9
Mapoly0108s0010 Marchantia polymorpha HOM05D003389 ORTHO05D003917 1.2e-08 66.2 129 32.6
Cre06.g304850 Chlamydomonas reinhardtii HOM05D003389 ORTHO05D003917 2.1e-08 65.5 137 31.4
AT4G22960 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 1.0e-07 63.2 121 33.1
CSS0044016 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 1.8e-07 62.4 121 32.2
MCO06G239 Micromonas commoda HOM05D003389 ORTHO05D003917 2.3e-07 62.0 157 31.2
HanXRQChr02g0043501 Helianthus annuus HOM05D003389 ORTHO05D003917 3.9e-07 61.2 119 32.8
MBI04_g06622_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 3.3e-06 58.2 96 32.3
CDE12G0774 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 5.7e-06 57.4 100 39.0


User provided reference genes

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