Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 1.8e-281 971.8 478 100.0
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 8.5e-186 654.1 530 65.1
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.1e-177 627.1 527 62.2
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 3.4e-174 615.5 525 61.9
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 1.1e-169 600.5 530 60.2
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 5.0e-154 548.5 452 60.6
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 5.0e-154 548.5 431 62.9
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 5.6e-153 545.0 457 59.3
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 1.6e-152 543.5 457 59.3
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.1e-151 539.3 472 58.5
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 5.2e-151 538.5 496 57.3
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 4.4e-150 535.4 456 60.7
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 9.8e-150 534.3 488 58.2
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 3.9e-146 522.3 503 55.3
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 8.6e-146 521.2 490 54.1
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 1.1e-145 520.8 451 58.1
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 8.1e-144 514.6 529 53.7
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.1e-143 514.2 489 55.4
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 3.1e-143 512.7 477 56.4
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 6.8e-143 511.5 465 57.4
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.5e-142 510.4 490 53.3
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 3.4e-142 509.2 461 56.2
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 5.8e-142 508.4 494 53.0
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 3.7e-141 505.8 394 62.2
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 8.4e-141 504.6 477 55.3
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.4e-140 503.8 506 53.4
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 2.4e-140 503.1 485 54.6
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 5.4e-140 501.9 490 53.7
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 5.4e-140 501.9 433 57.7
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 9.2e-140 501.1 455 57.4
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 1.2e-139 500.7 477 55.3
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 2.7e-139 499.6 429 57.3
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 2.7e-139 499.6 429 57.3
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 3.5e-139 499.2 460 55.9
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 7.8e-139 498.0 453 56.3
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 3.0e-138 496.1 421 58.7
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 5.1e-138 495.4 495 52.7
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 5.1e-138 495.4 464 56.2
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 6.6e-138 495.0 497 53.9
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 8.6e-138 494.6 489 52.8
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 8.6e-138 494.6 437 57.2
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.1e-137 494.2 519 51.3
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.1e-137 494.2 461 56.0
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 1.1e-137 494.2 495 51.9
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.5e-137 493.0 434 57.8
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 3.3e-137 492.7 494 52.8
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.3e-137 492.7 461 56.0
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 4.3e-137 492.3 505 51.5
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 5.6e-137 491.9 494 52.0
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 9.6e-137 491.1 464 56.5
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.2e-136 490.7 455 55.8
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 1.6e-136 490.3 395 61.0
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 2.8e-136 489.6 454 55.3
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 3.6e-136 489.2 466 54.9
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 6.2e-136 488.4 456 55.7
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 8.1e-136 488.0 460 53.9
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 8.1e-136 488.0 461 55.5
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 1.8e-135 486.9 509 50.9
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.8e-135 486.9 455 55.2
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 2.4e-135 486.5 525 51.6
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 5.2e-135 485.3 486 53.5
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 5.2e-135 485.3 467 53.7
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 6.8e-135 485.0 498 52.6
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 1.2e-134 484.2 476 52.9
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 1.5e-134 483.8 507 51.9
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 1.5e-134 483.8 476 52.7
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 5.8e-134 481.9 420 58.1
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 7.6e-134 481.5 521 50.9
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 9.9e-134 481.1 512 51.2
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 8.4e-133 478.0 320 69.1
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 1.4e-132 477.2 455 56.0
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 4.2e-132 475.7 523 50.5
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 5.4e-132 475.3 454 54.4
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 9.3e-132 474.6 493 50.7
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.2e-131 474.2 480 52.1
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.6e-131 473.8 443 56.0
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 4.6e-131 472.2 457 54.5
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 6.0e-131 471.9 468 53.8
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 7.8e-131 471.5 337 65.9
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 3.0e-130 469.5 436 56.4
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 4.3e-129 465.7 367 61.0
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.3e-128 464.2 366 61.5
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 8.1e-128 461.5 464 52.8
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 1.8e-127 460.3 446 52.5
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 6.9e-127 458.4 445 56.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 2.2e-125 453.4 425 54.6
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.2e-123 447.6 336 63.7
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.5e-118 430.6 453 51.4
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 4.9e-117 425.6 484 49.6
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 8.4e-117 424.9 302 67.9
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 4.2e-116 422.5 490 48.2
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 9.3e-116 421.4 399 55.6
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.0e-114 417.9 383 57.2
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 2.8e-104 383.3 391 50.4
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 8.5e-101 371.7 412 46.6
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.8e-98 364.0 408 49.8
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 6.3e-96 355.5 391 46.8
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 9.0e-95 351.7 333 55.9
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 2.0e-94 350.5 320 56.9
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 7.7e-94 348.6 364 48.6
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 3.8e-85 319.7 348 46.6
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 2.1e-83 313.9 268 59.7
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 2.2e-77 293.9 212 66.0
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 2.2e-77 293.9 212 66.0
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 3.3e-73 280.0 200 65.0
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.5e-68 263.8 254 51.2
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.7e-64 251.1 399 38.3
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 2.2e-61 240.7 286 48.6
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 2.9e-61 240.4 286 48.6
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.1e-60 238.4 179 64.2
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 7.0e-55 219.2 325 39.1
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 3.5e-54 216.9 224 51.8
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 4.5e-54 216.5 231 51.1
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 4.5e-54 216.5 267 46.8
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 5.0e-53 213.0 281 45.2
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 5.0e-53 213.0 358 34.1
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 2.9e-48 197.2 239 50.2
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 1.2e-46 191.8 170 57.1
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 5.2e-34 149.8 99 66.7
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 9.2e-31 139.0 74 79.7
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.6e-30 138.3 236 38.6
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.3e-29 134.4 73 80.8
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 5.1e-29 133.3 330 31.5
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 9.2e-23 112.5 106 53.8
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 3.3e-20 104.0 55 80.0
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 3.1e-18 97.4 83 56.6
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 8.9e-18 95.9 356 26.4
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.8e-10 71.6 139 33.8
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 5.3e-10 70.1 88 43.2


User provided reference genes

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