Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1639.0 800 100.0
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1350.5 808 79.8
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1238.4 809 73.5
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1234.6 803 73.2
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1179.5 823 68.3
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1168.3 808 69.6
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1165.6 807 68.6
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1162.5 801 68.9
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1157.5 809 69.5
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1157.5 809 69.5
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1152.1 807 69.1
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1146.3 807 68.0
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1146.3 843 65.7
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1140.2 809 67.1
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1139.4 809 67.7
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1137.9 808 67.5
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1137.5 856 65.3
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1135.2 808 67.7
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1134.4 808 67.9
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1133.2 807 67.4
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1133.2 808 66.6
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1132.5 809 67.1
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1130.5 804 67.0
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1129.0 809 66.7
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1127.9 806 67.0
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1127.9 800 66.2
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1127.1 809 66.4
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1126.7 804 67.2
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1124.4 807 67.8
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1119.8 809 65.6
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1119.4 810 65.3
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1118.6 807 67.5
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1115.9 806 66.4
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1114.4 809 66.7
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1110.9 837 63.9
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1107.8 807 65.2
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1105.5 820 65.7
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1104.0 808 64.9
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1103.6 808 64.7
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1102.0 844 64.0
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1099.7 808 65.6
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1098.6 806 67.1
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1091.3 806 65.4
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1088.2 760 69.1
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1084.7 806 64.9
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1083.6 806 64.6
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1077.0 888 60.1
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 5.5e-312 1074.7 807 64.1
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 5.5e-312 1073.9 818 63.6
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 4.9e-311 1070.8 810 63.2
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 9.2e-310 1066.6 807 62.8
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 3.5e-309 1064.7 839 62.6
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 1.1e-307 1059.7 807 62.5
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 7.3e-307 1057.0 805 63.6
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 1.6e-306 1055.8 778 65.6
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 1.4e-305 1052.7 801 62.8
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 2.6e-304 1048.5 803 63.3
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 2.6e-304 1048.5 850 60.1
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 5.8e-304 1047.3 807 62.6
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 1.1e-302 1043.1 806 62.4
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 3.2e-302 1041.6 808 62.1
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 7.1e-302 1040.4 801 62.4
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 3.0e-300 1035.0 808 61.9
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 3.0e-300 1035.0 808 61.9
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 6.6e-300 1033.9 800 63.2
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 8.7e-300 1033.5 802 62.8
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 7.3e-299 1030.4 807 61.1
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 9.6e-299 1030.0 805 62.0
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 1.6e-298 1029.2 799 61.5
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 3.1e-297 1025.0 807 61.6
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 4.0e-297 1024.6 801 61.5
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 5.2e-297 1024.2 794 61.8
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 5.2e-297 1024.2 807 61.2
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 7.6e-296 1020.4 807 60.7
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 8.4e-295 1016.9 809 62.9
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 1.6e-293 1012.7 845 59.6
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 1.0e-292 1010.0 851 59.5
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 3.3e-291 1005.0 796 60.2
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 2.8e-290 1001.9 783 62.5
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 2.9e-287 991.9 804 59.3
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.3e-284 983.0 811 58.0
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 6.7e-284 980.7 804 59.8
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 1.8e-281 972.6 795 61.0
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 3.4e-280 968.4 804 58.5
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 1.2e-264 916.8 720 62.4
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 5.9e-264 914.4 729 61.3
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 5.0e-263 911.4 715 64.1
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 2.4e-249 865.9 598 67.7
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 3.1e-249 865.5 615 66.0
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 7.5e-235 817.8 807 50.6
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 1.0e-228 797.3 617 63.5
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 5.4e-225 785.0 614 64.3
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.5e-203 713.8 820 46.7
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 4.6e-200 702.2 608 57.6
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 1.5e-195 687.2 822 45.0
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 7.1e-193 678.3 818 44.9
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 4.8e-173 612.5 457 67.2
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 3.1e-172 609.8 530 57.0
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 1.5e-150 537.7 458 59.2
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 4.2e-145 519.6 588 45.2
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 3.0e-135 486.9 458 51.1
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 2.6e-134 483.8 374 63.6
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 9.1e-132 475.3 400 60.0
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 3.2e-129 466.8 446 51.6
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 9.1e-124 448.7 314 66.6
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 6.1e-120 436.0 464 50.2
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.7e-106 391.3 339 58.7
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 2.8e-88 330.9 191 74.9
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.1e-87 328.9 306 58.2
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.7e-77 293.9 260 56.9
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 1.7e-74 285.0 486 37.0
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 5.8e-70 270.0 236 57.2
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 1.1e-65 255.8 146 75.3
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 2.4e-60 238.0 149 69.8
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 3.6e-56 224.2 844 26.3
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 6.9e-55 219.9 123 72.4
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 2.6e-54 218.0 192 53.6
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 2.0e-46 191.8 144 56.9
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.8e-40 171.4 189 49.2
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 5.5e-36 157.1 95 67.4
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 3.3e-33 147.9 91 73.6
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 5.0e-21 107.5 191 36.6
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 2.5e-20 105.1 54 77.8
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 8.2e-16 90.1 120 41.7
Os06g0251200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.3e-08 63.9 171 29.8
BraA03t12364Z Brassica rapa HOM05D001597 ORTHO05D001512 1.1e-07 63.2 272 26.8
BolC3t16166H Brassica oleracea HOM05D001597 ORTHO05D001512 3.1e-07 61.6 272 26.8
A03p31920 Brassica napus HOM05D001597 ORTHO05D001512 5.3e-07 60.8 272 26.8
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 9.1e-07 60.1 52 50.0
BcaC01g06849 Brassica carinata HOM05D001597 ORTHO05D001512 1.2e-06 59.7 272 26.8
C03p38940 Brassica napus HOM05D001597 ORTHO05D001512 1.2e-06 59.7 272 26.8
Os10g0434999 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.2e-06 59.7 137 29.2
Os10g0435900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.2e-06 59.7 137 29.2
Ah.12g052180 Amaranthus hybridus HOM05D001597 ORTHO05D001512 1.6e-06 59.3 244 27.9
ClCG03G014380 Citrullus lanatus HOM05D000563 ORTHO05D000536 2.0e-06 58.9 149 30.9
MELO3C015600.2 Cucumis melo HOM05D000563 ORTHO05D000536 5.9e-06 57.4 149 30.2
CsaV3_1G041850 Cucumis sativus L. HOM05D000563 ORTHO05D000536 5.9e-06 57.4 149 30.9
Mapoly0037s0107 Marchantia polymorpha HOM05D001597 ORTHO05D001512 7.7e-06 57.0 243 27.2
SMO367G0758 Selaginella moellendorffii HOM05D001597 ORTHO05D001512 7.7e-06 57.0 242 27.3


User provided reference genes

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