Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 5.1e-171 604.4 313 100.0
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 1.2e-74 284.3 309 58.9
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.0e-38 164.9 302 41.4
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.6e-36 157.5 308 39.3
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 8.4e-33 145.2 130 63.8
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 3.9e-30 136.3 299 38.8
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 5.1e-30 136.0 302 36.1
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.5e-29 133.7 309 35.6
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 7.4e-29 132.1 288 35.8
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.4e-27 127.9 287 36.9
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 1.4e-27 127.9 304 36.8
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 3.1e-27 126.7 296 35.5
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 5.3e-27 125.9 286 35.7
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 9.0e-27 125.2 304 35.5
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.2e-26 124.8 284 38.0
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.2e-26 124.8 286 35.3
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 5.8e-26 122.5 303 35.3
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 1.0e-25 121.7 305 35.1
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 2.2e-25 120.6 286 34.3
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 1.1e-24 118.2 290 36.2
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.1e-24 118.2 302 34.4
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 1.9e-24 117.5 298 35.9
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 3.2e-24 116.7 289 35.3
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 7.1e-24 115.5 288 34.0
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 9.3e-24 115.2 286 32.5
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.2e-23 114.8 294 34.4
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.6e-23 112.8 299 33.4
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 7.9e-23 112.1 289 36.3
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 7.9e-23 112.1 303 33.0
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 1.0e-22 111.7 286 32.5
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 2.3e-22 110.5 293 32.8
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 3.9e-22 109.8 297 34.3
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.5e-21 107.1 300 34.0
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 4.3e-21 106.3 297 33.7
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.6e-20 104.4 278 33.5
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 2.2e-20 104.0 286 31.1
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 2.8e-20 103.6 230 37.8
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 3.7e-20 103.2 284 33.1
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 4.8e-20 102.8 303 32.0
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.1e-19 101.7 306 31.4
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 1.1e-19 101.7 282 34.8
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.4e-19 101.3 280 33.6
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 5.3e-19 99.4 271 33.2
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 6.9e-19 99.0 293 32.4
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 2.6e-18 97.1 294 31.0
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 2.6e-18 97.1 288 31.9
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 4.5e-18 96.3 295 30.8
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 4.5e-18 96.3 289 31.1
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 5.9e-18 95.9 294 32.0
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 7.7e-18 95.5 257 35.4
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.0e-17 95.1 297 30.6
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 1.0e-17 95.1 292 30.5
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.3e-17 94.7 300 29.3
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.3e-17 94.7 306 31.7
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 1.7e-17 94.4 295 30.2
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 1.7e-17 94.4 295 30.2
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 3.8e-17 93.2 278 31.3
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 3.8e-17 93.2 286 30.1
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 3.8e-17 93.2 297 29.6
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 5.0e-17 92.8 302 29.8
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 6.5e-17 92.4 296 30.1
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 8.5e-17 92.0 283 31.1
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.1e-16 91.7 295 30.2
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.1e-16 91.7 297 31.0
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.1e-16 91.7 298 30.9
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 1.1e-16 91.7 299 28.4
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 1.1e-16 91.7 292 30.1
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 1.4e-16 91.3 304 28.3
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.4e-16 91.3 283 31.8
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.4e-16 91.3 235 34.5
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 2.5e-16 90.5 283 31.8
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 3.2e-16 90.1 295 30.5
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 3.2e-16 90.1 284 29.2
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.2e-16 89.7 283 31.8
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 4.2e-16 89.7 284 30.6
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 5.5e-16 89.4 280 31.1
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 7.2e-16 89.0 283 30.4
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 7.2e-16 89.0 297 31.6
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 9.4e-16 88.6 288 30.9
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 9.4e-16 88.6 283 31.1
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.7e-15 87.0 292 30.1
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.7e-15 87.0 292 30.1
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.7e-15 87.0 283 31.4
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 3.6e-15 86.7 278 29.1
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 7.9e-15 85.5 309 30.1
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.0e-14 85.1 277 31.8
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 1.4e-14 84.7 279 30.1
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 3.9e-14 83.2 289 30.1
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 3.9e-14 83.2 286 31.1
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 6.7e-14 82.4 295 30.8
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 6.7e-14 82.4 281 29.9
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 8.8e-14 82.0 287 29.3
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 1.1e-13 81.6 255 30.6
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 3.3e-13 80.1 287 28.9
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 3.3e-13 80.1 288 29.2
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 5.7e-13 79.3 280 30.0
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 1.3e-12 78.2 280 29.6
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 3.7e-12 76.6 282 29.1
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 3.7e-12 76.6 160 40.0
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 4.8e-12 76.3 282 28.7
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 4.8e-12 76.3 287 27.5
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 1.1e-11 75.1 294 28.9
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.4e-11 74.7 281 26.7
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 1.8e-11 74.3 285 28.8
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 2.4e-11 73.9 284 28.9
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 2.4e-11 73.9 282 30.9
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 3.1e-11 73.6 280 28.6
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 1.2e-10 71.6 300 27.7
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 2.6e-10 70.5 280 28.9
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 2.9e-09 67.0 286 26.6
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.8e-06 57.8 120 35.8
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 1.8e-06 57.8 162 31.5
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 2.3e-06 57.4 87 43.7
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.3e-06 57.4 286 25.9
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 5.1e-06 56.2 85 41.2


User provided reference genes

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