Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 0.0e+00 1360.9 693 100.0
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.2e-297 1026.2 667 79.3
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 4.0e-261 904.8 707 67.6
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.9e-258 896.0 668 69.6
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 5.6e-239 831.2 699 62.4
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.4e-237 826.6 694 62.2
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.7e-217 758.4 713 55.1
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 6.1e-217 758.1 713 55.1
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 5.7e-215 751.5 721 55.5
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 2.9e-211 739.2 716 53.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 4.2e-210 735.3 718 53.6
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.7e-209 732.6 722 53.6
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.8e-208 729.9 696 57.2
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.3e-208 729.6 711 54.9
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.8e-206 722.6 722 52.9
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.0e-204 716.5 718 52.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 6.1e-201 704.9 720 52.1
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 2.3e-200 703.0 712 51.8
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.1e-197 694.1 731 52.1
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 3.5e-196 689.1 705 52.2
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.9e-195 686.0 701 52.6
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 3.8e-195 685.6 727 49.8
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.5e-194 683.7 704 50.3
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 7.2e-194 681.4 708 50.8
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.6e-193 679.1 719 49.7
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 3.6e-193 679.1 692 51.4
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 8.0e-193 677.9 712 51.1
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.4e-192 677.2 720 50.0
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 3.0e-192 676.0 730 49.9
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.5e-191 673.7 719 50.8
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.6e-191 672.9 717 49.2
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 4.4e-191 672.2 715 51.5
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 5.7e-191 671.8 689 51.5
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 2.2e-190 669.8 729 50.6
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.8e-189 666.8 719 49.8
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 7.0e-189 664.8 719 50.3
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.6e-188 663.7 704 52.4
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.7e-188 662.9 717 49.1
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.5e-188 662.5 706 50.4
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 7.7e-188 661.4 696 50.4
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.3e-187 660.6 717 48.8
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 2.3e-187 659.8 719 49.5
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.1e-186 657.5 745 48.7
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 4.2e-186 655.6 717 48.7
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 7.2e-186 654.8 708 50.1
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.2e-185 654.1 717 49.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 8.0e-185 651.4 686 50.6
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 8.0e-185 651.4 671 51.0
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.0e-184 651.0 698 50.0
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 1.4e-184 650.6 720 48.8
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.8e-184 650.2 705 49.8
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 4.0e-184 649.0 724 49.4
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 4.0e-184 649.0 701 50.1
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 6.8e-184 648.3 714 50.3
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 8.9e-184 647.9 705 50.5
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 8.9e-184 647.9 723 49.0
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.5e-183 647.1 719 48.3
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 2.6e-183 646.4 703 51.4
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 3.4e-183 646.0 710 48.5
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 3.4e-183 646.0 710 48.5
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 5.7e-183 645.2 706 49.4
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 3.7e-182 642.5 718 48.5
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.8e-181 640.2 712 48.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.4e-181 638.6 711 49.9
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 5.9e-180 635.2 703 48.8
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 1.3e-179 634.0 703 48.1
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 8.6e-179 631.3 699 48.5
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.5e-178 629.8 708 47.9
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 4.3e-178 629.0 709 48.5
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 5.6e-178 628.6 709 48.4
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 9.5e-178 627.9 710 46.8
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 2.1e-177 626.7 714 48.0
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.4e-175 619.4 696 48.0
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 4.4e-175 619.0 709 47.8
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 4.9e-174 615.5 708 46.2
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.2e-172 610.9 711 46.3
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.7e-172 609.8 740 46.2
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 7.8e-172 608.2 716 47.1
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 3.3e-170 602.8 734 46.0
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 4.7e-169 599.0 698 47.3
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 6.2e-169 598.6 730 45.2
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 6.2e-169 598.6 719 45.9
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 8.9e-168 594.7 746 44.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 1.2e-167 594.3 731 46.2
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 4.4e-167 592.4 600 52.5
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 9.8e-167 591.3 715 46.3
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.3e-166 590.9 723 45.5
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.2e-166 590.1 717 45.3
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.1e-165 585.9 725 44.8
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 5.4e-165 585.5 730 45.5
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 9.2e-165 584.7 723 45.2
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-164 584.3 719 45.1
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.2e-164 584.3 701 45.9
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 4.6e-164 582.4 724 45.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 7.8e-164 581.6 723 44.8
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.3e-163 580.9 744 45.2
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.7e-163 580.5 713 45.7
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 5.1e-163 578.9 719 44.9
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 5.1e-163 578.9 617 50.1
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.5e-162 576.6 628 49.5
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.8e-161 573.2 703 45.2
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.2e-159 567.8 767 43.4
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.9e-157 560.5 698 44.6
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 2.7e-156 556.6 634 48.6
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 3.9e-155 552.7 700 43.9
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 7.3e-154 548.5 802 42.3
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.9e-149 533.9 617 46.8
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.2e-148 531.2 623 47.2
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.3e-142 511.1 630 45.9
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.9e-134 483.4 665 41.8
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 8.4e-134 481.9 772 38.0
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 2.1e-132 477.2 627 40.7
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.7e-132 476.9 642 42.4
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.2e-125 453.4 519 46.8
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.8e-120 437.6 522 47.1
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.4e-117 427.9 821 35.2
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.5e-117 426.0 763 37.1
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 8.7e-115 418.7 706 36.5
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.7e-114 416.0 758 35.5
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 9.0e-112 408.7 723 36.7
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.2e-87 328.6 556 36.9
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.2e-83 313.2 509 36.0
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.7e-78 298.1 863 27.3
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.7e-73 281.6 466 35.6
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.1e-68 264.6 658 29.5
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 7.8e-63 246.1 429 36.6
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.1e-40 172.6 224 39.3
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.2e-39 169.1 214 43.9
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 7.8e-39 166.4 210 41.4
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.7e-38 165.2 125 59.2
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.3e-37 160.6 135 54.8
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 5.8e-34 150.2 310 33.9
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 6.6e-30 136.7 96 64.6
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.5e-29 135.6 106 57.5
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 4.0e-27 127.5 98 58.2
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.6e-26 124.8 95 55.8
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 9.9e-26 122.9 129 48.8
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 4.5e-18 97.4 119 40.3
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 9.6e-13 79.7 243 31.3
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.3e-12 79.3 65 55.4
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 3.7e-12 77.8 74 45.9
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 4.0e-11 74.3 125 37.6
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 1.6e-07 62.4 444 23.6
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 1.8e-06 58.9 89 38.2
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 2.3e-06 58.5 89 39.3
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 2.3e-06 58.5 89 39.3
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 5.1e-06 57.4 152 29.6
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 6.7e-06 57.0 74 41.9


User provided reference genes

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