Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 2.8e-293 1011.1 486 100.0
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 2.3e-186 656.0 513 63.9
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 8.7e-170 600.9 515 59.2
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 1.6e-168 596.7 515 57.3
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.3e-165 587.0 514 57.8
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 6.3e-160 568.2 515 54.0
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 5.9e-158 561.6 514 55.3
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 5.1e-154 548.5 514 52.1
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 5.1e-154 548.5 514 54.9
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 1.3e-152 543.9 558 52.2
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 2.8e-152 542.7 514 52.7
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 2.8e-152 542.7 516 52.9
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 3.7e-152 542.3 513 53.4
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 3.7e-152 542.3 512 53.5
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 1.1e-151 540.8 514 52.5
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 1.5e-150 537.0 515 51.7
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 1.0e-149 534.3 493 55.4
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 7.2e-148 528.1 515 50.1
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 7.2e-148 528.1 520 51.5
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 2.1e-147 526.6 518 52.1
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 7.9e-147 524.6 489 53.8
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 7.9e-147 524.6 513 50.5
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 1.0e-146 524.2 515 50.5
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 3.0e-146 522.7 514 51.2
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 8.8e-146 521.2 520 51.5
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 5.7e-145 518.5 525 51.6
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 2.2e-144 516.5 513 50.5
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 3.7e-144 515.8 515 50.9
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 1.4e-143 513.8 517 51.3
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 1.2e-142 510.8 515 50.7
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 2.0e-142 510.0 513 51.3
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 2.6e-142 509.6 515 50.3
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 3.4e-142 509.2 513 51.1
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 7.7e-142 508.1 513 50.1
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 6.5e-141 505.0 512 49.4
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 8.5e-141 504.6 547 47.2
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 9.4e-140 501.1 529 47.8
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 2.6e-137 493.0 501 50.7
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 9.7e-137 491.1 478 50.4
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 1.3e-136 490.7 300 72.3
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 6.3e-136 488.4 515 47.8
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 1.9e-132 476.9 512 46.5
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 3.2e-132 476.1 529 47.3
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.2e-132 475.7 529 47.1
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 4.2e-132 475.7 515 46.6
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 2.1e-131 473.4 518 46.1
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 2.7e-131 473.0 517 46.2
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 6.1e-131 471.9 517 46.0
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 1.0e-130 471.1 516 46.3
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.0e-130 469.2 529 46.7
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 4.4e-129 465.7 302 68.9
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 1.7e-128 463.8 512 45.7
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 2.2e-128 463.4 474 49.8
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 4.8e-128 462.2 515 46.0
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 4.8e-128 462.2 520 47.1
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 1.4e-127 460.7 495 46.1
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.4e-127 460.7 522 46.6
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 5.3e-127 458.8 401 58.4
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 1.0e-125 454.5 516 44.8
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 1.0e-125 454.5 516 44.8
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 1.9e-124 450.3 524 44.5
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 9.4e-124 448.0 522 44.3
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 8.0e-123 444.9 540 45.7
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 1.4e-122 444.1 528 45.8
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 5.2e-122 442.2 388 53.9
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 1.2e-121 441.0 541 43.1
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 4.8e-120 435.6 485 49.5
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 7.7e-118 428.3 634 40.2
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 1.9e-116 423.7 475 45.9
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 4.2e-116 422.5 300 63.3
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 9.8e-113 411.4 468 45.1
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 1.8e-111 407.1 461 46.9
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 1.0e-109 401.4 429 49.9
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.3e-109 401.0 501 43.7
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 8.0e-107 391.7 509 41.5
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 3.0e-106 389.8 299 57.5
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 1.2e-105 387.9 540 38.9
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 1.5e-105 387.5 486 45.1
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 9.8e-105 384.8 517 40.2
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 1.7e-101 374.0 451 43.9
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 4.3e-100 369.4 606 36.8
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 6.2e-99 365.5 432 47.0
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 5.8e-97 359.0 526 41.4
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 7.5e-97 358.6 300 57.3
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 1.2e-91 341.3 398 46.7
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 2.8e-91 340.1 196 73.5
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 1.4e-90 337.8 429 45.2
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 4.9e-88 329.3 258 56.2
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 3.9e-85 319.7 438 40.9
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 3.9e-85 319.7 299 51.2
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 3.6e-83 313.2 452 37.6
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 8.1e-83 312.0 417 41.5
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 4.9e-80 302.8 258 55.8
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 2.2e-72 277.3 167 70.1
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 6.6e-69 265.8 511 34.1
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 4.9e-64 249.6 168 69.0
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 7.1e-63 245.7 476 34.9
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 1.3e-59 235.0 157 65.6
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.3e-59 235.0 311 43.7
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 1.1e-58 231.9 157 65.0
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.0e-53 215.3 282 47.5
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.3e-45 188.3 375 30.7
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 1.3e-45 188.3 292 39.0
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 1.1e-42 178.7 178 49.4
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 4.2e-39 166.8 252 36.1
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 2.1e-38 164.5 252 35.7
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 1.0e-37 162.2 513 27.7
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 2.5e-36 157.5 261 37.2
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 3.8e-32 143.7 78 74.4
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 1.2e-30 138.7 277 37.5
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 1.0e-29 135.6 88 64.8
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 2.2e-27 127.9 87 62.1
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 3.7e-27 127.1 307 30.0
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.1e-26 125.6 115 56.5
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 4.5e-25 120.2 57 80.7
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 7.7e-25 119.4 266 29.3
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 2.1e-22 111.3 68 66.2
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 6.7e-21 106.3 232 31.0
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 9.1e-18 95.9 81 53.1
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 9.4e-15 85.9 158 35.4
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 1.2e-14 85.5 159 37.7
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 5.7e-12 76.6 82 47.6
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 7.0e-10 69.7 48 60.4
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 1.2e-09 68.9 152 34.2
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 1.6e-09 68.6 192 28.6
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 1.0e-08 65.9 54 50.0
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 1.7e-08 65.1 148 28.4


User provided reference genes

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