Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.4e-93 346.3 179 100.0
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.5e-87 326.2 179 93.3
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 6.6e-75 284.3 179 81.6
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 3.2e-69 265.4 174 80.5
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.2e-69 265.4 180 76.7
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 6.9e-64 247.7 185 73.5
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 6.9e-64 247.7 185 73.5
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.2e-63 246.9 178 76.4
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.6e-63 244.2 178 75.8
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 1.0e-62 243.8 185 71.4
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.1e-61 240.4 175 75.4
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.5e-61 238.0 178 74.2
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 9.3e-61 237.3 184 71.7
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 6.0e-60 234.6 175 71.4
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 6.0e-60 234.6 173 72.3
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 7.9e-60 234.2 186 68.3
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.3e-59 233.4 190 68.4
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.8e-59 233.0 178 70.8
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 5.1e-59 231.5 176 70.5
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 8.7e-59 230.7 178 70.2
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 8.7e-59 230.7 178 70.2
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.9e-58 229.6 175 70.9
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.5e-58 229.2 183 66.1
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.3e-58 228.4 171 72.5
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.3e-58 228.4 173 71.7
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 7.4e-58 227.6 175 69.7
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 2.8e-57 225.7 187 67.4
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 2.8e-57 225.7 185 69.7
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.8e-57 225.7 203 65.0
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 4.8e-57 224.9 175 67.4
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 4.8e-57 224.9 188 63.8
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 6.2e-57 224.6 176 71.0
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.2e-57 224.6 176 67.6
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.2e-57 224.6 176 67.6
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.2e-57 224.6 176 67.6
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 2.4e-56 222.6 187 64.2
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.0e-56 221.9 173 69.9
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 6.9e-56 221.1 173 70.5
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 9.0e-56 220.7 175 68.0
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 9.0e-56 220.7 156 74.4
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 9.0e-56 220.7 176 69.3
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.2e-55 220.3 171 67.3
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.5e-55 219.9 178 69.1
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.6e-55 219.2 175 71.4
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 4.5e-55 218.4 182 66.5
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 5.8e-55 218.0 177 65.0
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 5.8e-55 218.0 182 61.5
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.3e-54 216.9 173 69.4
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 2.2e-54 216.1 177 68.4
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 2.2e-54 216.1 184 66.3
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 5.0e-54 214.9 188 63.8
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.1e-53 213.8 133 80.5
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.1e-53 213.8 175 66.3
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.4e-53 213.4 189 66.1
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.4e-53 213.4 179 64.2
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.4e-53 213.4 178 66.9
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.9e-53 213.0 176 68.8
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.2e-53 211.8 178 66.9
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 4.2e-53 211.8 188 63.3
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 4.2e-53 211.8 168 69.6
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 5.5e-53 211.5 176 68.8
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 7.1e-53 211.1 179 65.4
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.6e-52 209.9 174 64.4
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 2.1e-52 209.5 192 60.4
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 2.7e-52 209.1 173 63.0
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.7e-52 209.1 187 65.8
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.5e-52 208.8 179 65.9
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 6.1e-52 208.0 179 65.9
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 6.1e-52 208.0 175 68.0
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.9e-52 207.6 181 65.7
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.8e-51 206.5 177 65.5
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 3.0e-51 205.7 184 63.6
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 3.0e-51 205.7 184 63.6
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 3.0e-51 205.7 184 63.6
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 5.1e-51 204.9 173 65.9
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 6.7e-51 204.5 174 62.1
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 8.7e-51 204.1 175 64.6
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 1.5e-50 203.4 183 63.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.9e-50 203.0 183 64.5
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.9e-50 203.0 194 62.4
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.5e-50 202.6 183 64.5
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 3.3e-50 202.2 185 63.8
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 3.3e-50 202.2 182 63.2
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 4.3e-50 201.8 182 62.6
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 1.3e-49 200.3 182 62.6
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.6e-49 199.9 181 63.5
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.8e-49 199.1 181 63.0
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.7e-49 198.7 176 63.1
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 6.3e-49 198.0 188 59.0
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 6.3e-49 198.0 175 62.9
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 8.2e-49 197.6 157 68.8
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.1e-48 197.2 201 56.7
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.4e-48 196.8 176 62.5
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.4e-48 196.8 176 63.6
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.4e-48 196.8 176 63.6
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-47 193.7 194 58.2
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.5e-47 193.4 177 62.7
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 7.7e-47 191.0 185 57.8
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.7e-47 191.0 175 64.0
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.7e-46 189.9 158 67.7
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.2e-46 189.5 181 60.8
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.2e-46 189.5 181 60.8
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 2.9e-46 189.1 186 59.7
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.9e-46 189.1 149 66.4
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 8.5e-46 187.6 183 59.0
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.1e-45 187.2 192 59.9
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 5.5e-45 184.9 173 56.1
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.5e-45 184.9 120 75.8
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 7.2e-45 184.5 177 59.9
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.3e-43 179.5 183 56.3
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 8.8e-43 177.6 154 64.9
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-41 173.7 178 59.6
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 4.8e-41 171.8 179 55.3
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 3.1e-40 169.1 102 82.4
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 3.1e-40 169.1 139 67.6
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.2e-38 162.9 168 54.2
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 6.5e-38 161.4 188 49.5
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 8.5e-38 161.0 176 56.2
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.4e-37 160.2 142 61.3
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 2.5e-37 159.5 185 49.2
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 3.2e-37 159.1 124 63.7
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.9e-35 152.1 91 79.1
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.8e-33 145.2 132 58.3
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.5e-31 140.2 102 66.7
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 6.5e-30 134.8 103 66.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 4.2e-29 132.1 124 54.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 5.5e-29 131.7 101 65.3
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.2e-28 130.6 117 58.1
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.2e-28 130.6 101 64.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.7e-28 129.4 71 85.9
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.5e-26 123.6 123 58.5
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 9.7e-26 120.9 127 50.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.1e-24 117.5 97 63.9
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 3.1e-24 115.9 98 62.2
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.3e-24 115.2 175 44.6
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 2.6e-23 112.8 106 53.8
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.2e-22 109.8 112 52.7
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.9e-21 106.7 110 50.9
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.2e-21 105.5 98 54.1
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 4.2e-21 105.5 99 57.6
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.2e-21 104.8 99 53.5
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-19 100.1 102 56.9
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 8.8e-19 97.8 99 50.5
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.0e-18 96.7 100 49.0
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.8e-17 92.8 64 75.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 2.8e-17 92.8 71 59.2
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 8.3e-17 91.3 98 44.9
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.1e-16 90.9 67 70.1
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 9.1e-16 87.8 101 47.5
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.2e-15 87.4 145 43.4
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 3.5e-15 85.9 94 50.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 8.5e-14 81.3 130 36.2


User provided reference genes

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