Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 5.7e-130 467.6 240 100.0
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 4.1e-80 302.0 240 71.2
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.9e-70 268.9 241 62.7
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 9.9e-66 254.2 240 59.6
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.3e-65 253.8 240 61.2
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.9e-65 252.7 238 60.1
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.1e-64 250.8 238 58.8
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.2e-63 247.3 238 59.7
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.6e-63 246.9 238 59.7
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 2.7e-63 246.1 242 57.9
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 2.7e-63 246.1 241 58.5
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 6.0e-63 245.0 238 58.8
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 7.8e-63 244.6 238 58.8
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 1.7e-62 243.4 238 58.4
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.0e-62 242.7 239 57.7
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 5.1e-62 241.9 240 57.5
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 5.1e-62 241.9 239 57.3
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 5.1e-62 241.9 238 58.4
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 6.6e-62 241.5 239 57.7
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 8.6e-62 241.1 238 57.6
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 1.1e-61 240.7 242 55.8
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 1.9e-61 240.0 238 56.7
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 2.5e-61 239.6 239 56.9
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.5e-61 239.6 242 55.8
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 3.3e-61 239.2 242 55.0
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 4.3e-61 238.8 237 58.6
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.3e-61 238.8 242 55.0
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 9.6e-61 237.7 235 58.3
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 9.6e-61 237.7 236 56.4
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 9.6e-61 237.7 240 57.5
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.1e-60 236.5 238 57.6
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 3.6e-60 235.7 238 57.6
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 6.2e-60 235.0 236 56.4
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 8.1e-60 234.6 240 57.5
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 8.1e-60 234.6 241 55.6
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 8.1e-60 234.6 235 57.4
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 1.8e-59 233.4 237 57.8
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.8e-59 233.4 237 57.8
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.8e-59 233.4 240 54.6
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 3.1e-59 232.6 240 55.8
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 6.9e-59 231.5 240 55.4
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 8.9e-59 231.1 237 54.4
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 8.9e-59 231.1 239 54.4
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 8.9e-59 231.1 239 55.2
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 8.9e-59 231.1 240 53.3
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 8.9e-59 231.1 235 56.6
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 1.2e-58 230.7 240 52.1
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.2e-58 230.7 240 54.2
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.5e-58 230.3 239 54.4
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.5e-58 230.3 238 53.4
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 2.0e-58 229.9 239 54.0
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 2.0e-58 229.9 239 54.0
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 2.6e-58 229.6 241 54.4
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 2.6e-58 229.6 241 53.1
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 2.6e-58 229.6 241 53.1
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 2.6e-58 229.6 245 55.9
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 2.6e-58 229.6 241 58.1
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 3.4e-58 229.2 230 56.5
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 4.4e-58 228.8 240 53.3
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 4.4e-58 228.8 240 53.3
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 5.8e-58 228.4 235 54.0
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 5.8e-58 228.4 240 52.5
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 5.8e-58 228.4 240 53.8
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 9.9e-58 227.6 241 52.7
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 9.9e-58 227.6 235 55.7
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.7e-57 226.9 235 55.7
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 1.7e-57 226.9 237 53.6
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.7e-57 226.9 240 55.0
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.7e-57 226.9 240 54.6
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 2.2e-57 226.5 241 52.3
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 3.8e-57 225.7 231 55.8
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.9e-57 225.3 237 56.1
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.4e-56 223.8 236 57.2
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.9e-56 223.4 237 56.1
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 3.2e-56 222.6 240 54.2
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 4.2e-56 222.2 240 52.5
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 4.2e-56 222.2 235 53.6
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 5.4e-56 221.9 231 54.5
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 9.3e-56 221.1 235 54.0
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 9.3e-56 221.1 235 54.5
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 9.3e-56 221.1 240 55.8
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 9.3e-56 221.1 243 52.3
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.2e-55 220.7 237 55.7
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.2e-55 220.7 237 54.9
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.6e-55 220.3 235 54.9
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.5e-55 219.2 236 53.0
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 6.0e-55 218.4 238 53.4
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 7.8e-55 218.0 235 54.5
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 7.8e-55 218.0 231 52.4
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.0e-54 217.6 237 53.6
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 1.0e-54 217.6 334 44.3
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.3e-54 217.2 238 52.9
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 1.3e-54 217.2 239 53.1
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.7e-54 216.9 238 52.1
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.7e-54 216.9 240 52.9
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.0e-54 216.1 237 53.6
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 5.1e-54 215.3 239 53.1
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 6.6e-54 214.9 235 52.8
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 8.7e-54 214.5 235 53.2
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.9e-53 213.4 235 52.3
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 2.5e-53 213.0 238 54.2
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 4.3e-53 212.2 218 55.5
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 7.3e-53 211.5 242 50.8
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.3e-52 210.7 218 55.0
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.1e-52 209.9 219 55.3
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.1e-51 207.6 242 52.9
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.4e-51 206.5 257 49.4
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 5.3e-51 205.3 236 48.7
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 2.6e-50 203.0 235 48.9
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.3e-49 200.7 216 53.2
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 8.4e-49 198.0 221 50.7
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.2e-48 196.1 240 49.6
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.2e-47 194.1 213 53.1
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.2e-47 194.1 241 49.4
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.6e-47 192.2 237 49.8
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 4.6e-47 192.2 207 56.0
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 5.1e-46 188.7 221 49.8
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 1.3e-44 184.1 237 47.3
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 8.1e-44 181.4 212 50.9
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 3.1e-43 179.5 239 46.0
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 5.3e-43 178.7 228 44.7
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 7.6e-42 174.9 232 44.4
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.7e-41 173.7 242 47.1
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.5e-39 166.0 231 46.8
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 4.8e-36 155.6 230 43.5
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 4.0e-35 152.5 201 50.2
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 5.3e-35 152.1 228 40.4
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 4.9e-33 145.6 83 83.1
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 3.5e-31 139.4 213 41.3
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 4.6e-31 139.0 91 80.2
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 1.0e-30 137.9 83 78.3
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 1.9e-29 133.7 167 51.5
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.3e-29 132.5 83 75.9
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 7.4e-29 131.7 95 71.6
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-28 131.0 83 74.7
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.3e-28 131.0 81 74.1
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 5.9e-26 122.1 92 68.5
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 7.6e-26 121.7 83 69.9
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 2.9e-25 119.8 83 68.7
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 5.0e-25 119.0 181 42.0
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.5e-24 116.7 83 66.3
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.1e-23 113.6 79 69.6
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.1e-21 107.8 73 76.7
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 5.7e-21 105.5 227 32.2
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.4e-19 100.1 88 61.4
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.4e-19 100.1 80 62.5
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.3e-17 94.4 240 31.7
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.9e-16 90.5 95 52.6
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.9e-14 82.8 45 82.2
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.2e-10 71.2 107 39.3
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 2.6e-10 70.1 47 66.0
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.3e-09 67.8 69 50.7
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-09 67.4 48 66.7
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.7e-09 67.4 48 62.5
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.5e-09 65.5 100 44.0
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.5e-09 65.1 39 76.9
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.9e-08 63.9 229 27.5
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 3.2e-08 63.2 74 44.6


User provided reference genes

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