Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 5.3e-190 667.5 342 100.0
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.4e-121 440.3 289 83.7
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 4.9e-111 405.2 288 74.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.3e-108 397.1 280 76.1
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.5e-104 383.6 290 71.0
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.6e-101 373.6 290 69.7
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.8e-100 370.2 280 69.3
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 8.7e-100 367.9 278 70.1
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.5e-99 366.3 278 69.4
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 9.7e-99 364.4 278 68.3
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.6e-98 363.6 278 68.3
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 8.2e-98 361.3 290 65.2
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.1e-97 360.9 278 68.3
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 2.4e-97 359.8 278 68.7
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.6e-96 356.3 290 65.5
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 4.5e-96 355.5 288 66.0
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.0e-95 354.4 278 67.6
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.7e-95 353.6 288 64.6
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 5.0e-95 352.1 290 64.5
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.5e-95 351.7 290 64.8
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.1e-94 350.9 290 64.5
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 1.4e-94 350.5 293 64.5
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.9e-94 350.1 280 66.1
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.5e-94 349.7 300 63.3
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.2e-94 348.2 291 66.0
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.2e-93 347.4 278 65.8
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.2e-93 347.4 289 65.4
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.1e-93 346.7 278 65.5
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.7e-93 346.3 291 65.3
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 7.9e-93 344.7 278 65.5
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.0e-92 344.4 290 63.8
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.8e-92 343.6 286 65.0
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 2.3e-92 343.2 279 67.4
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.8e-92 341.3 291 64.6
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 8.8e-92 341.3 297 62.6
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.9e-91 340.1 289 64.7
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.9e-91 340.1 279 64.5
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 3.3e-91 339.3 288 63.5
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 7.4e-91 338.2 278 65.8
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.7e-90 337.0 290 61.4
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 2.2e-90 336.7 256 68.4
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 3.7e-90 335.9 287 62.4
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 6.3e-90 335.1 241 71.8
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.2e-90 334.7 280 64.3
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.1e-89 334.3 294 60.2
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.1e-89 334.3 288 60.1
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.8e-89 333.6 273 64.8
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 4.1e-89 332.4 288 60.4
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 5.3e-89 332.0 277 64.3
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 5.3e-89 332.0 316 58.5
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.2e-88 330.9 279 63.1
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.6e-88 329.7 278 64.0
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 2.6e-88 329.7 288 61.1
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.6e-88 329.7 292 61.0
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 3.4e-88 329.3 288 61.1
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 5.9e-88 328.6 296 62.5
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 7.7e-88 328.2 280 63.2
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.7e-87 327.0 288 60.4
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.7e-87 327.0 288 60.4
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.2e-87 326.6 291 60.8
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 2.2e-87 326.6 287 62.0
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.9e-87 326.2 294 60.5
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.8e-87 325.9 277 61.4
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 5.0e-87 325.5 279 62.0
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 8.5e-87 324.7 291 60.5
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-86 324.3 299 57.9
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.5e-86 323.2 279 63.1
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.5e-86 323.2 279 63.1
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.5e-86 323.2 279 63.1
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.5e-86 323.2 277 61.0
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.5e-86 323.2 226 73.0
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 4.2e-86 322.4 280 61.8
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.2e-86 322.4 278 62.9
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 7.2e-86 321.6 291 60.8
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 9.4e-86 321.2 279 63.1
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.2e-85 320.9 286 61.2
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.6e-85 320.5 288 58.7
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.6e-85 320.5 226 70.4
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.7e-85 318.9 296 59.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 6.1e-85 318.5 281 61.9
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 7.9e-85 318.2 281 61.6
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 7.9e-85 318.2 287 59.2
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.8e-84 317.0 229 71.6
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 3.0e-84 316.2 278 62.6
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 3.0e-84 316.2 226 69.9
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.0e-84 316.2 278 61.9
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 6.7e-84 315.1 279 61.6
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.1e-83 314.3 216 74.1
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.1e-83 314.3 277 61.7
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.1e-83 314.3 277 61.7
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.1e-83 314.3 277 61.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.1e-83 314.3 291 59.1
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.5e-83 313.9 280 60.7
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.6e-83 313.2 332 54.2
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 9.7e-83 311.2 277 61.4
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 9.7e-83 311.2 278 59.7
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.7e-82 310.5 278 60.4
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.7e-82 310.5 276 61.6
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 3.7e-82 309.3 311 55.6
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.4e-81 307.4 278 58.3
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 9.1e-81 304.7 265 60.8
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.3e-79 300.8 245 64.1
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.7e-79 300.4 289 58.1
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 2.2e-79 300.1 276 58.3
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 8.5e-79 298.1 326 53.4
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.1e-78 297.7 250 62.4
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 9.4e-78 294.7 289 58.8
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 6.1e-77 292.0 226 67.3
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 3.0e-76 289.7 279 57.3
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 5.2e-76 288.9 226 66.8
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 6.3e-74 282.0 226 63.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 5.3e-73 278.9 279 54.5
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 2.0e-72 276.9 240 64.2
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.2e-71 273.5 235 61.7
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.2e-71 273.5 238 60.1
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 2.9e-71 273.1 266 57.1
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.8e-68 263.8 280 53.6
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 3.0e-68 263.1 234 58.1
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 5.9e-64 248.8 294 45.9
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.9e-62 243.8 237 54.0
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 4.2e-62 242.7 218 61.5
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 7.0e-57 225.3 260 48.5
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 3.5e-56 223.0 304 44.1
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.2e-50 203.8 201 56.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.1e-49 199.9 197 48.2
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.2e-48 198.0 197 48.2
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.5e-48 196.4 197 47.2
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.8e-48 195.3 197 47.2
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.0e-45 185.3 207 51.2
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.9e-44 181.8 215 49.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.6e-43 180.3 150 60.7
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.2e-41 171.8 138 63.0
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.5e-38 161.8 197 42.1
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 5.8e-35 152.5 258 41.5
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.5e-35 152.1 152 55.3
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.8e-35 151.8 135 60.7
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.3e-31 140.6 119 63.9
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-29 134.4 167 41.3
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-29 132.1 182 40.1
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.9e-28 128.6 180 39.4
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.2e-24 118.2 205 39.0
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 6.0e-24 115.9 168 41.1
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-17 95.1 219 37.0
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.6e-16 91.3 83 59.0
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 2.1e-16 90.9 99 53.5
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 2.1e-16 90.9 99 53.5
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 3.5e-16 90.1 217 28.1
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.3e-15 87.4 91 49.5
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 5.1e-15 86.3 76 59.2
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 9.9e-11 72.0 71 52.1
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.2e-09 67.0 49 63.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.4e-09 66.2 49 61.2
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.4e-09 66.2 49 61.2
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.6e-08 63.2 49 59.2
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 1.1e-06 58.5 60 53.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 1.1e-06 58.5 60 53.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.3e-06 57.0 37 67.6
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 4.3e-06 56.6 46 60.9
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 7.3e-06 55.8 61 49.2


User provided reference genes

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