Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 2.4e-248 861.7 433 100.0
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 1.9e-240 835.5 435 97.2
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 1.7e-137 493.4 452 58.2
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 3.8e-132 475.7 471 55.6
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 9.6e-128 461.1 464 56.0
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.3e-119 434.1 466 53.2
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 4.8e-119 432.2 502 50.0
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 1.2e-117 427.6 438 51.8
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 5.8e-117 425.2 461 51.6
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 7.6e-117 424.9 384 56.8
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 1.0e-116 424.5 384 56.8
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 2.9e-116 422.9 442 51.8
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.9e-115 420.2 489 49.5
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 4.2e-115 419.1 448 50.7
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 5.5e-115 418.7 381 57.0
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 1.6e-114 417.2 451 50.1
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 1.6e-114 417.2 451 50.1
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.1e-114 416.8 448 51.3
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 2.7e-114 416.4 455 50.8
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 2.7e-114 416.4 431 52.9
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 3.5e-114 416.0 466 50.0
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 4.6e-114 415.6 446 50.4
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 6.0e-114 415.2 450 50.4
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 6.0e-114 415.2 427 51.5
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.0e-113 414.5 489 48.5
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 1.0e-113 414.5 471 48.4
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.8e-113 413.7 443 50.8
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 2.3e-113 413.3 489 49.9
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 2.3e-113 413.3 464 51.1
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.3e-113 413.3 448 50.4
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.0e-113 412.9 448 50.4
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 3.0e-113 412.9 488 48.4
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 3.0e-113 412.9 490 48.8
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.5e-112 410.6 475 49.1
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 2.5e-112 409.8 474 48.1
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 3.3e-112 409.5 457 49.5
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.3e-111 407.5 474 47.9
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 1.6e-111 407.1 476 48.7
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.6e-111 407.1 441 51.0
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.7e-111 406.0 397 53.1
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 3.7e-111 406.0 416 52.9
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 3.7e-111 406.0 453 50.3
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 4.8e-111 405.6 462 50.0
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 6.2e-111 405.2 459 49.5
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 6.2e-111 405.2 459 49.2
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 8.2e-111 404.8 478 48.3
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.1e-110 404.4 466 49.8
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 1.4e-110 404.1 471 49.9
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 1.8e-110 403.7 472 46.8
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 2.4e-110 403.3 468 47.6
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 2.4e-110 403.3 436 50.0
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 4.0e-110 402.5 409 55.0
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 4.0e-110 402.5 471 48.4
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.3e-110 402.1 407 51.4
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.9e-110 401.7 407 51.4
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 9.0e-110 401.4 480 49.0
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.2e-109 401.0 459 48.6
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.2e-109 401.0 442 49.3
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 3.4e-109 399.4 422 51.2
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 4.5e-109 399.1 477 48.6
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 5.8e-109 398.7 454 49.1
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 7.6e-109 398.3 449 50.3
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 7.6e-109 398.3 412 51.0
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.8e-108 396.0 421 51.5
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 5.0e-108 395.6 477 47.6
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.4e-108 394.8 435 50.1
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 1.1e-107 394.4 442 50.7
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 1.4e-107 394.0 482 47.3
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 4.2e-107 392.5 462 48.5
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 7.1e-107 391.7 467 49.7
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 7.1e-107 391.7 393 51.4
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 1.6e-106 390.6 394 52.3
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 6.1e-106 388.7 385 52.2
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.0e-105 386.3 432 50.7
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 1.9e-104 383.6 448 49.1
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.9e-104 383.6 446 48.2
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 9.7e-104 381.3 443 47.6
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 1.1e-102 377.9 468 49.6
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.4e-102 377.5 341 56.3
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 1.8e-102 377.1 466 48.5
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 3.1e-102 376.3 469 48.2
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 4.1e-102 375.9 454 48.2
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 5.3e-102 375.6 483 47.2
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.0e-100 371.3 441 49.7
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 8.5e-100 368.2 469 47.8
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 3.2e-99 366.3 468 47.0
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 5.5e-99 365.5 472 47.0
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 3.6e-98 362.8 463 47.9
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 7.9e-98 361.7 463 47.5
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 7.9e-98 361.7 320 56.6
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 3.9e-97 359.4 459 47.3
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 2.4e-94 350.1 393 48.6
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 5.3e-94 349.0 459 45.8
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.8e-92 342.8 401 49.1
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 5.0e-92 342.4 351 53.3
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 3.9e-89 332.8 396 46.7
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.8e-81 307.4 338 50.3
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 2.3e-81 307.0 475 40.8
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 2.0e-80 303.9 396 42.4
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 4.2e-75 286.2 389 41.6
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 4.0e-73 279.6 387 44.2
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.2e-72 278.1 358 42.5
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 2.0e-72 277.3 386 42.2
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.1e-70 271.6 207 59.9
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 2.2e-55 220.7 325 44.9
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 3.7e-55 219.9 236 52.5
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.3e-51 205.7 173 57.2
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 8.4e-31 139.0 253 32.4
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.9e-30 137.9 182 48.4
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 3.3e-19 100.5 208 32.2
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.0e-16 91.3 140 47.9
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 4.2e-14 83.6 120 44.2
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 7.1e-14 82.8 83 49.4
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 4.3e-11 73.6 251 24.3
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 1.2e-08 65.5 118 26.3
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 1.2e-08 65.5 118 26.3
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 4.5e-08 63.5 132 24.2
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 3.8e-07 60.5 212 22.2
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 6.4e-07 59.7 119 26.9
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 6.4e-07 59.7 119 26.9
MD15G1148600 Malus domestica HOM05D006258 ORTHO05D007961 1.1e-06 58.9 119 25.2
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-06 58.5 132 27.3
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-06 58.5 132 27.3
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-06 58.5 132 27.3
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.9e-06 58.2 132 27.3
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 1.9e-06 58.2 129 25.6
Os09g0423300 Oryza sativa ssp. japonica HOM05D006258 ORTHO05D007961 1.9e-06 58.2 209 20.1
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.2e-06 57.4 114 28.9
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 7.1e-06 56.2 124 25.0
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 7.1e-06 56.2 121 24.8
arahy.Tifrunner.gnm1.ann1.65M2C6 Arachis hypogaea HOM05D002649 ORTHO05D002838 9.3e-06 55.8 177 22.6
arahy.Tifrunner.gnm1.ann1.B4V8RG Arachis hypogaea HOM05D002649 ORTHO05D002838 9.3e-06 55.8 177 22.6


User provided reference genes

Program Settings