Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.7e-241 837.8 424 100.0
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 4.8e-225 784.3 425 94.8
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 2.8e-156 555.8 518 61.4
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 3.4e-154 548.9 451 67.2
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 2.2e-153 546.2 450 66.9
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 2.9e-153 545.8 445 67.2
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 3.8e-153 545.4 450 66.7
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 8.4e-153 544.3 450 66.4
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.2e-151 540.4 438 67.6
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 7.4e-149 531.2 477 62.7
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 9.7e-149 530.8 382 71.5
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 9.7e-149 530.8 373 72.7
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 9.7e-149 530.8 460 65.7
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 2.4e-147 526.2 370 73.0
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.5e-146 523.5 440 65.9
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 5.9e-146 521.5 465 63.2
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.0e-145 520.8 442 64.0
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.1e-144 517.3 481 61.5
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 3.2e-144 515.8 446 65.0
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 8.8e-142 507.7 447 64.4
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.5e-141 506.9 458 60.9
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 2.5e-141 506.1 352 73.9
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.1e-139 500.7 447 62.6
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 1.8e-139 500.0 450 63.3
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.8e-139 500.0 454 61.0
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 2.4e-139 499.6 437 62.7
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 4.1e-139 498.8 451 60.3
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 1.2e-138 497.3 442 63.1
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 5.9e-138 495.0 444 62.2
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 5.9e-138 495.0 369 69.4
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.7e-137 493.4 447 61.3
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 5.0e-137 491.9 448 60.7
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 6.5e-137 491.5 356 70.8
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 6.5e-137 491.5 393 65.9
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.1e-136 490.7 466 60.7
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 2.5e-136 489.6 448 60.5
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 5.5e-136 488.4 449 60.6
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 9.4e-136 487.6 451 60.3
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.6e-135 486.9 451 60.5
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.6e-135 486.9 452 60.6
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 1.6e-135 486.9 457 59.5
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 2.1e-135 486.5 450 61.6
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.6e-135 485.7 449 61.2
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 3.6e-135 485.7 447 59.1
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 4.7e-135 485.3 448 62.1
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 4.7e-135 485.3 378 66.7
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 6.1e-135 485.0 445 62.9
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 7.9e-135 484.6 434 61.5
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 7.9e-135 484.6 362 68.0
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.8e-134 483.4 451 60.1
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 3.9e-134 482.3 445 60.2
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.7e-134 481.5 362 67.4
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 8.8e-134 481.1 458 61.6
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.0e-133 479.9 455 60.9
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.6e-133 479.6 381 65.4
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 3.3e-133 479.2 350 69.7
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 4.4e-133 478.8 467 58.5
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 5.7e-133 478.4 453 60.5
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 5.7e-133 478.4 458 61.1
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 5.7e-133 478.4 441 61.0
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 7.4e-133 478.0 361 67.9
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 9.7e-133 477.6 450 60.0
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.2e-132 476.5 380 65.3
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 3.7e-132 475.7 445 60.9
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 4.8e-132 475.3 439 59.5
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 6.3e-132 474.9 399 61.7
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 3.1e-131 472.6 360 66.7
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 4.1e-131 472.2 370 66.5
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 4.1e-131 472.2 341 71.6
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 9.1e-131 471.1 352 69.3
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 9.1e-131 471.1 445 59.3
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 1.5e-130 470.3 321 76.3
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.5e-130 470.3 393 64.6
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 2.0e-130 469.9 352 68.8
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 4.5e-130 468.8 444 59.5
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 7.7e-130 468.0 437 61.6
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 3.8e-129 465.7 373 66.0
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 8.5e-129 464.5 374 65.2
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 1.4e-128 463.8 374 66.3
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 1.4e-128 463.8 419 60.9
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 1.9e-128 463.4 438 58.9
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 4.2e-128 462.2 439 59.0
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 7.2e-128 461.5 360 65.6
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.6e-127 460.3 433 59.1
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.6e-127 460.3 427 59.7
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 2.7e-127 459.5 351 67.0
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 3.6e-127 459.1 360 66.4
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 6.1e-127 458.4 435 58.9
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 8.0e-127 458.0 434 58.3
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.0e-126 457.6 427 59.5
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.4e-126 457.2 428 59.1
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.8e-126 456.8 360 66.1
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 6.7e-126 454.9 428 59.3
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 1.1e-125 454.1 434 58.3
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 3.7e-124 449.1 444 58.3
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.0e-121 441.0 444 58.3
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 9.4e-120 434.5 336 65.8
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 9.4e-120 434.5 336 65.8
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 3.7e-116 422.5 422 57.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.1e-115 421.0 322 66.1
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.4e-115 420.6 331 66.2
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.2e-114 417.5 317 69.7
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.0e-114 416.8 319 66.1
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 2.5e-112 409.8 329 63.5
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 5.9e-106 388.7 358 58.1
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 5.9e-106 388.7 269 69.5
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.5e-104 384.0 299 66.2
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 2.5e-104 383.3 253 74.3
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 3.0e-102 376.3 379 52.0
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.7e-97 360.5 303 67.7
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 1.2e-95 354.4 338 53.3
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 1.5e-93 347.4 410 46.6
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.7e-89 334.0 285 62.1
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 1.2e-85 321.2 299 55.2
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.3e-84 317.8 201 77.6
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 4.9e-84 315.8 241 68.5
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 2.4e-83 313.5 346 53.8
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 4.6e-82 309.3 330 50.9
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 3.0e-81 306.6 232 65.5
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 1.8e-70 270.8 281 50.2
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 1.7e-68 264.2 343 44.0
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 3.5e-66 256.5 281 51.6
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 5.6e-64 249.2 275 52.7
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 9.6e-64 248.4 283 47.3
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.2e-61 241.5 178 67.4
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 2.3e-49 200.7 183 57.9
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 2.8e-47 193.7 190 56.8
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 8.1e-47 192.2 231 50.6
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 5.6e-40 169.5 203 55.7
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 3.9e-33 146.7 395 31.9
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 5.3e-30 136.3 121 62.0
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 4.2e-27 126.7 84 72.6
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 1.4e-25 121.7 83 71.1
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 1.8e-25 121.3 76 72.4
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 2.0e-21 107.8 73 71.2
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 5.9e-21 106.3 91 61.5
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 8.5e-20 102.4 73 68.5
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 3.7e-15 87.0 100 49.0
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 8.5e-12 75.9 57 64.9
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 8.0e-10 69.3 54 68.5
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 2.4e-06 57.8 34 79.4


User provided reference genes

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