Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 4.1e-215 751.1 383 100.0
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.8e-141 506.5 400 69.8
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.8e-139 499.2 372 70.4
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 1.0e-136 490.7 380 69.7
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 7.2e-135 484.6 373 68.9
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 3.6e-126 455.7 380 64.7
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 9.7e-124 447.6 372 65.1
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.0e-120 437.6 373 63.0
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.4e-117 427.2 371 62.5
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.8e-117 426.8 375 60.8
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.8e-117 426.8 399 57.9
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.1e-116 424.1 378 61.6
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 5.7e-116 421.8 368 62.2
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 9.7e-116 421.0 375 61.6
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 8.2e-115 417.9 374 59.9
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 3.1e-114 416.0 377 60.2
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 7.0e-114 414.8 371 62.0
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 2.0e-113 413.3 379 59.1
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 2.0e-113 413.3 373 60.1
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.0e-113 413.3 367 61.0
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 3.5e-113 412.5 369 61.0
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.0e-112 411.0 369 60.7
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 3.8e-112 409.1 373 58.4
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 5.0e-112 408.7 365 59.7
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 8.5e-112 407.9 376 59.0
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 8.5e-112 407.9 374 58.8
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.1e-111 407.5 367 59.4
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.9e-111 406.8 382 58.6
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.9e-111 406.8 373 56.3
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.5e-111 406.4 369 59.3
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 3.2e-111 406.0 382 58.9
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 7.2e-111 404.8 381 57.7
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 9.4e-111 404.4 374 58.0
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.2e-110 404.1 371 56.9
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.2e-110 404.1 376 59.0
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-110 404.1 376 59.0
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 2.1e-110 403.3 367 60.5
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 4.7e-110 402.1 369 59.6
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 8.0e-110 401.4 367 60.2
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 8.0e-110 401.4 372 57.8
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.0e-109 401.0 371 59.0
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.3e-109 399.8 376 58.5
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.3e-109 399.8 365 57.8
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 5.2e-109 398.7 363 59.0
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 6.8e-109 398.3 369 58.0
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 8.8e-109 397.9 376 58.8
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 8.8e-109 397.9 368 57.9
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 3.4e-108 396.0 366 59.3
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.4e-108 396.0 370 57.8
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 3.4e-108 396.0 376 56.1
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 4.4e-108 395.6 367 58.9
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 5.7e-108 395.2 367 58.3
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.3e-107 394.0 371 59.3
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.2e-107 393.3 376 57.4
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.2e-107 393.3 376 57.4
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 8.3e-107 391.3 373 59.0
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.4e-106 390.6 375 56.5
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.8e-106 390.2 383 55.6
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 5.4e-106 388.7 383 56.7
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 9.1e-106 387.9 377 56.2
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.2e-105 387.5 369 57.7
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.0e-105 386.7 400 56.0
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 2.7e-105 386.3 375 56.0
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 3.5e-105 386.0 368 55.2
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 5.9e-105 385.2 374 55.1
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.3e-104 384.0 370 58.1
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.7e-104 383.6 376 55.6
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 3.8e-104 382.5 433 52.9
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.1e-103 380.9 374 55.6
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.9e-103 380.2 370 54.9
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 2.5e-103 379.8 380 55.8
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 3.2e-103 379.4 363 57.6
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 4.2e-103 379.0 377 54.4
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.6e-102 377.1 404 52.0
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 2.1e-102 376.7 368 56.2
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 2.7e-102 376.3 366 56.8
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 2.7e-102 376.3 376 55.9
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 6.1e-102 375.2 376 54.0
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 8.0e-102 374.8 379 54.4
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.0e-101 374.4 380 53.9
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.4e-101 374.0 374 54.0
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.0e-101 372.5 382 54.2
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.2e-101 372.1 376 53.7
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 6.8e-101 371.7 373 55.0
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 8.8e-101 371.3 387 53.5
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.5e-100 370.5 373 55.2
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.5e-100 370.5 377 53.3
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.6e-100 369.8 372 56.5
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 3.7e-99 365.9 382 53.4
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 6.3e-99 365.2 363 55.9
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 5.0e-96 355.5 371 53.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.1e-95 354.4 371 52.8
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 5.6e-95 352.1 371 53.6
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 7.3e-95 351.7 366 54.4
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 2.6e-92 343.2 381 51.7
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 4.4e-92 342.4 374 52.9
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 8.3e-91 338.2 365 52.6
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 4.1e-90 335.9 377 50.7
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 7.0e-90 335.1 341 56.0
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 8.6e-88 328.2 296 58.8
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 8.6e-88 328.2 389 48.6
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 7.3e-87 325.1 391 48.3
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.8e-85 320.5 319 56.7
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 7.5e-84 315.1 433 45.3
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 2.0e-81 307.0 350 50.9
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 4.3e-79 299.3 433 44.8
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.6e-78 297.4 241 60.6
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 6.2e-78 295.4 259 57.5
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 5.8e-76 288.9 410 42.2
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 6.4e-75 285.4 298 53.4
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.4e-74 284.3 247 64.4
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.9e-74 283.9 366 48.4
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 9.9e-68 261.5 193 75.6
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 6.4e-67 258.8 366 44.3
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.1e-66 258.1 341 44.6
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 1.2e-65 254.6 396 41.7
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.1e-61 241.5 370 40.8
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 9.3e-58 228.4 427 38.2
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 3.5e-57 226.5 403 39.0
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.0e-56 224.9 361 39.1
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-55 221.5 381 40.7
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 2.5e-55 220.3 217 57.1
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 9.0e-53 211.8 166 59.0
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 3.2e-50 203.4 292 44.9
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 5.4e-50 202.6 264 41.3
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 1.6e-41 174.5 158 54.4
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 3.5e-41 173.3 149 56.4
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.3e-40 170.6 175 50.9
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 3.7e-38 163.3 143 55.9
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.9e-35 153.7 110 64.5
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 2.7e-25 120.6 178 49.4
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 2.7e-25 120.6 261 34.1
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 5.7e-23 112.8 184 42.4
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.3e-16 90.9 102 47.1
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 2.3e-16 90.9 64 57.8
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 3.7e-14 83.6 65 60.0
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 4.5e-12 76.6 127 40.2
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-11 75.1 54 70.4
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-11 75.1 54 70.4
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.3e-11 75.1 108 41.7
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 5.0e-11 73.2 52 67.3
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 3.9e-08 63.5 345 22.9
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-07 62.0 103 44.7
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-07 62.0 103 44.7
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.4e-07 59.3 172 34.3


User provided reference genes

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