Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 3.7e-70 268.1 136 100.0
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.5e-50 203.0 136 77.2
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 2.5e-50 202.2 136 77.2
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 5.6e-50 201.1 137 78.8
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 1.6e-49 199.5 136 75.0
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 2.1e-49 199.1 136 74.3
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 2.4e-48 195.7 136 72.1
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 6.9e-48 194.1 131 75.6
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 6.9e-48 194.1 136 71.3
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 5.8e-47 191.0 137 71.5
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 5.8e-47 191.0 136 71.3
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 9.9e-47 190.3 136 71.3
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.3e-46 189.9 136 69.9
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.3e-46 189.9 136 72.1
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 1.3e-46 189.9 136 70.6
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 1.7e-46 189.5 136 69.9
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 2.2e-46 189.1 136 69.1
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 2.9e-46 188.7 136 70.6
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 3.8e-46 188.3 136 70.6
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 4.9e-46 188.0 136 71.3
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 6.4e-46 187.6 139 71.2
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 8.4e-46 187.2 136 71.3
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 8.4e-46 187.2 137 73.0
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.1e-45 186.8 136 68.4
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 1.9e-45 186.0 137 73.0
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.9e-45 186.0 137 69.3
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 4.2e-45 184.9 137 71.5
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.2e-45 184.9 137 71.5
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 5.4e-45 184.5 133 69.9
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 5.4e-45 184.5 137 68.6
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 7.1e-45 184.1 137 70.8
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 9.3e-45 183.7 139 70.5
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 1.2e-44 183.3 137 70.1
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.1e-44 182.6 136 66.9
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.7e-44 182.2 137 71.5
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.7e-44 182.2 137 70.8
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 3.5e-44 181.8 137 68.6
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 6.0e-44 181.0 137 70.8
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 7.9e-44 180.6 137 68.6
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.0e-43 180.3 134 67.2
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 1.0e-43 180.3 136 64.7
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 1.0e-43 180.3 134 64.9
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 1.3e-43 179.9 136 67.6
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.3e-43 179.9 136 64.7
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 3.0e-43 178.7 138 68.8
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 3.9e-43 178.3 137 67.2
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 5.1e-43 177.9 138 68.8
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 5.1e-43 177.9 138 69.6
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 5.1e-43 177.9 136 65.4
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 5.1e-43 177.9 138 68.1
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 5.1e-43 177.9 138 68.1
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 8.7e-43 177.2 133 68.4
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 8.7e-43 177.2 137 66.4
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.1e-42 176.8 134 66.4
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.5e-42 175.6 140 67.1
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 3.3e-42 175.3 137 62.8
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 4.3e-42 174.9 138 66.7
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 7.4e-42 174.1 136 63.2
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 7.4e-42 174.1 137 65.0
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.3e-41 173.3 138 62.3
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.3e-41 173.3 139 64.0
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 1.6e-41 172.9 137 62.0
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 2.1e-41 172.6 138 66.7
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 2.8e-41 172.2 129 69.8
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 3.7e-41 171.8 138 63.8
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 3.7e-41 171.8 137 62.8
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.8e-40 169.5 138 65.2
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.8e-40 169.5 136 63.2
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.8e-40 169.5 140 65.0
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 3.1e-40 168.7 141 64.5
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 3.1e-40 168.7 141 64.5
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 5.3e-40 167.9 138 64.5
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 5.3e-40 167.9 126 70.6
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 5.3e-40 167.9 136 61.8
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 9.0e-40 167.2 139 61.9
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 1.2e-39 166.8 138 60.9
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.5e-39 166.4 140 64.3
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 3.4e-39 165.2 140 61.4
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 9.9e-39 163.7 139 62.6
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 9.9e-39 163.7 137 61.3
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 9.9e-39 163.7 137 63.5
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 9.9e-39 163.7 103 77.7
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 9.9e-39 163.7 140 64.3
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.3e-38 163.3 131 64.1
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.2e-38 162.5 136 60.3
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 2.9e-38 162.2 139 61.9
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 2.9e-38 162.2 139 61.9
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 4.9e-38 161.4 136 61.0
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 8.4e-38 160.6 139 61.9
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.1e-37 160.2 139 61.9
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.1e-37 160.2 136 62.5
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.4e-37 159.8 136 61.0
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.9e-37 159.5 138 61.6
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 3.2e-37 158.7 104 75.0
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.2e-37 158.7 136 62.5
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 4.2e-37 158.3 111 70.3
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 5.5e-37 157.9 140 60.7
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 5.5e-37 157.9 140 65.0
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 7.1e-37 157.5 138 60.9
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 7.1e-37 157.5 138 60.9
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 9.3e-37 157.1 137 61.3
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 9.3e-37 157.1 137 61.3
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 9.3e-37 157.1 137 61.3
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.6e-36 156.4 138 60.9
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 2.1e-36 156.0 137 60.6
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 2.1e-36 156.0 103 71.8
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 2.7e-36 155.6 98 80.6
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 2.7e-36 155.6 140 61.4
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 4.6e-36 154.8 137 59.9
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 1.0e-35 153.7 134 61.2
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 3.0e-35 152.1 168 51.2
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 6.7e-35 151.0 107 69.2
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.9e-34 149.4 88 84.1
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 5.6e-34 147.9 128 60.9
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 9.6e-34 147.1 129 60.5
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.6e-33 146.4 155 54.8
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 2.1e-33 146.0 115 65.2
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 3.7e-33 145.2 127 60.6
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 4.0e-32 141.7 173 49.7
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 5.3e-32 141.4 116 61.2
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 4.5e-31 138.3 138 55.1
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 2.9e-30 135.6 144 55.6
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 2.9e-30 135.6 89 73.0
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 1.1e-29 133.7 89 69.7
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 4.6e-28 128.3 101 61.4
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.8e-27 126.3 89 64.0
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 5.1e-27 124.8 144 51.4
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 6.7e-27 124.4 112 62.5
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 1.1e-26 123.6 70 82.9
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 3.3e-26 122.1 88 71.6
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 3.1e-24 115.5 90 58.9
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.5e-23 113.2 108 57.4
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 6.5e-22 107.8 75 72.0
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 4.3e-18 95.1 108 53.7
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 1.3e-17 93.6 87 56.3
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 4.8e-17 91.7 65 69.2
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 9.1e-16 87.4 87 54.0
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.3e-10 68.9 42 83.3
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 7.4e-10 67.8 69 53.6
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 5.3e-08 61.6 37 75.7
SGA_v2.0_scaffold21G09536 Striga asiatica HOM05D002686 ORTHO05D003222 2.0e-07 59.7 128 31.2
MELO3C015544.2 Cucumis melo HOM05D002686 ORTHO05D003222 3.4e-07 58.9 122 32.8
Dinv42419 Davidia involucrata HOM05D002686 ORTHO05D003222 7.7e-07 57.8 124 34.7
Manes.16G091000 Manihot esculenta HOM05D002686 ORTHO05D003222 7.7e-07 57.8 155 32.3
ClCG03G014820 Citrullus lanatus HOM05D002686 ORTHO05D003222 1.0e-06 57.4 122 33.6
CsaV3_1G041320 Cucumis sativus L. HOM05D002686 ORTHO05D003222 1.0e-06 57.4 122 33.6
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 1.3e-06 57.0 125 31.2
Cc06_g12530 Coffea canephora HOM05D002686 ORTHO05D003222 1.3e-06 57.0 149 30.9
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 1.7e-06 56.6 130 33.1
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 1.7e-06 56.6 153 34.6
SalBow6G2263 Salvia bowleyana HOM05D002686 ORTHO05D003222 2.2e-06 56.2 145 33.1
Sed0011309 Sechium edule HOM05D002686 ORTHO05D003222 2.2e-06 56.2 120 35.0
Zm00001eb373960 Zea mays HOM05D002686 ORTHO05D003222 2.9e-06 55.8 114 34.2
Actinidia39634 Actinidia chinensis HOM05D002686 ORTHO05D003222 5.0e-06 55.1 148 33.8
BolC3t13645H Brassica oleracea HOM05D002686 ORTHO05D003222 6.5e-06 54.7 145 30.3
CAN.G1661.28 Capsicum annuum HOM05D002686 ORTHO05D003222 6.5e-06 54.7 142 33.1
Lj4A917T72 Lonicera japonica HOM05D002686 ORTHO05D003222 6.5e-06 54.7 130 31.5
Sabra06G0108500 Salix brachista HOM05D002686 ORTHO05D003222 6.5e-06 54.7 148 30.4
Sabra18G0055000 Salix brachista HOM05D002686 ORTHO05D003222 6.5e-06 54.7 123 30.9
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 8.5e-06 54.3 121 32.2


User provided reference genes

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