Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19251 Striga asiatica HOM05D000300 ORTHO05D000383 9.0e-84 313.5 157 100.0
SGA_v2.0_scaffold52G19248 Striga asiatica HOM05D000300 ORTHO05D000383 2.2e-58 229.2 140 82.1
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 1.8e-55 219.5 140 81.4
SGA_v2.0_scaffold52G19250 Striga asiatica HOM05D000300 ORTHO05D000383 5.7e-54 214.5 140 78.6
SGA_v2.0_scaffold340G49333 Striga asiatica HOM05D000300 ORTHO05D000383 8.5e-42 174.1 140 62.9
MSTRG.20673 Avicennia marina HOM05D000300 ORTHO05D000383 7.4e-38 161.0 140 58.6
SGA_v2.0_scaffold340G49335 Striga asiatica HOM05D000300 ORTHO05D000383 8.2e-37 157.5 145 57.9
SalBow5G2486 Salvia bowleyana HOM05D000300 ORTHO05D000383 9.4e-33 144.1 142 56.3
Oeu019258.1 Olea europaea HOM05D000300 ORTHO05D000383 5.5e-25 118.2 141 48.9
CAN.G1585.5 Capsicum annuum HOM05D000300 ORTHO05D000383 5.2e-23 111.7 140 45.7
PGSC0003DMG400031170 Solanum tuberosum HOM05D000300 ORTHO05D000383 1.5e-22 110.2 142 44.4
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 6.3e-21 104.8 142 43.0
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 6.3e-21 104.8 142 43.0
Migut.B01507 Erythranthe guttata HOM05D000300 ORTHO05D000383 1.1e-20 104.0 146 43.8
Nitab4.5_0000563g0220 Nicotiana tabacum HOM05D000300 ORTHO05D000383 3.1e-20 102.4 142 44.4
Peaxi162Scf00853g00422 Petunia axillaris HOM05D000300 ORTHO05D000383 1.6e-19 100.1 140 42.9
unitig_750.g28409 Utricularia gibba HOM05D000976 ORTHO05D000383 1.6e-19 100.1 140 42.1
Glyma.07G119200 Glycine max HOM05D000300 ORTHO05D000383 2.7e-19 99.4 123 44.7
DCAR_025055 Daucus carota HOM05D000300 ORTHO05D000383 5.9e-19 98.2 140 42.1
Haze_02868 Corylus avellana HOM05D000300 ORTHO05D000383 5.0e-18 95.1 150 40.0
CSS0023456 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 1.1e-17 94.0 141 41.1
EL10Ac1g00744 Beta vulgaris HOM05D000300 ORTHO05D000383 2.5e-17 92.8 119 42.9
Cfa011051 Carpinus fangiana HOM05D000300 ORTHO05D000383 7.2e-17 91.3 141 40.4
Potri.002G139400 Populus trichocarpa HOM05D000300 ORTHO05D000383 7.2e-17 91.3 141 36.9
Potri.014G050300 Populus trichocarpa HOM05D000300 ORTHO05D000383 7.2e-17 91.3 140 38.6
CANSAT25G2881 Cannabis sativa HOM05D000300 ORTHO05D000383 9.5e-17 90.9 141 40.4
ClCG05G002610 Citrullus lanatus HOM05D000300 ORTHO05D000383 9.5e-17 90.9 126 42.1
arahy.Tifrunner.gnm1.ann1.4H476I Arachis hypogaea HOM05D000300 ORTHO05D000383 1.2e-16 90.5 80 53.8
arahy.Tifrunner.gnm1.ann1.F6LU9D Arachis hypogaea HOM05D000300 ORTHO05D000383 1.2e-16 90.5 80 53.8
Manes.01G273600 Manihot esculenta HOM05D000300 ORTHO05D000383 1.6e-16 90.1 141 40.4
Sed0001468 Sechium edule HOM05D000300 ORTHO05D000383 1.6e-16 90.1 87 49.4
VMungo0331G0487 Vigna mungo HOM05D000300 ORTHO05D000383 2.1e-16 89.7 117 44.4
Cpa.g.sc41.84 Carica papaya HOM05D000300 ORTHO05D000383 3.6e-16 89.0 89 49.4
CsaV3_3G010060 Cucumis sativus L. HOM05D000300 ORTHO05D000383 3.6e-16 89.0 126 41.3
Lj2g0018249 Lotus japonicus HOM05D000300 ORTHO05D000383 3.6e-16 89.0 119 42.9
Sabra02G0108500 Salix brachista HOM05D000300 ORTHO05D000383 3.6e-16 89.0 141 36.9
QL04p029061 Quercus lobata HOM05D000300 ORTHO05D000383 4.7e-16 88.6 144 40.3
Sed0016119 Sechium edule HOM05D000300 ORTHO05D000383 4.7e-16 88.6 82 51.2
MELO3C006227.2 Cucumis melo HOM05D000300 ORTHO05D000383 6.1e-16 88.2 126 40.5
Phvul.010G045500 Phaseolus vulgaris HOM05D000300 ORTHO05D000383 6.1e-16 88.2 116 44.0
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 8.0e-16 87.8 89 48.3
Glyma.03G108100 Glycine max HOM05D000300 ORTHO05D000383 1.0e-15 87.4 80 53.8
Lj3g0006464 Lotus japonicus HOM05D000300 ORTHO05D000383 1.0e-15 87.4 119 42.0
Medtr8g007365 Medicago truncatula HOM05D000300 ORTHO05D000383 1.0e-15 87.4 120 42.5
Thecc.01G397900 Theobroma cacao HOM05D000300 ORTHO05D000383 1.0e-15 87.4 80 53.8
Eucgr.D01216 Eucalyptus grandis HOM05D000300 ORTHO05D000383 1.4e-15 87.0 80 50.0
Lalb_Chr12g0210471 Lupinus albus HOM05D000300 ORTHO05D000383 1.8e-15 86.7 124 37.1
TPR.G32144 Trifolium pratense HOM05D000300 ORTHO05D000383 2.3e-15 86.3 118 42.4
Gohir.A08G057500 Gossypium hirsutum HOM05D000300 ORTHO05D000383 3.0e-15 85.9 80 52.5
TPR.G32158 Trifolium pratense HOM05D000300 ORTHO05D000383 4.0e-15 85.5 120 40.8
Hma1.2p1_1623F.1_g294120 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 5.2e-15 85.1 141 40.4
Ah.05g177980 Amaranthus hybridus HOM05D000300 ORTHO05D000383 6.8e-15 84.7 76 51.3
Gohir.D08G066800 Gossypium hirsutum HOM05D000300 ORTHO05D000383 1.2e-14 84.0 80 52.5
Gorai.004G069400 Gossypium raimondii HOM05D000300 ORTHO05D000383 1.2e-14 84.0 80 52.5
Rhsim07G0037800 Rhododendron simsii HOM05D000300 ORTHO05D000383 1.2e-14 84.0 140 38.6
Duzib138G0977 Durio zibethinus HOM05D000300 ORTHO05D000383 2.0e-14 83.2 90 46.7
Duzib268G0370 Durio zibethinus HOM05D000300 ORTHO05D000383 2.0e-14 83.2 80 52.5
Hma1.2p1_0622F.1_g190880 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 2.0e-14 83.2 140 37.1
QL02p009783 Quercus lobata HOM05D000300 ORTHO05D000383 2.0e-14 83.2 140 37.9
Atru.BG.60.p Acer truncatum HOM05D000300 ORTHO05D000383 2.6e-14 82.8 76 51.3
Oeu037438.2 Olea europaea HOM05D000300 ORTHO05D000383 2.6e-14 82.8 81 49.4
Sabra14G0035700 Salix brachista HOM05D000300 ORTHO05D000383 2.6e-14 82.8 142 35.9
Sabra14G0037800 Salix brachista HOM05D000300 ORTHO05D000383 2.6e-14 82.8 142 35.9
Ca_14392_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 4.4e-14 82.0 123 41.5
PGR004G0466 Punica granatum HOM05D000300 ORTHO05D000383 7.5e-14 81.3 80 46.2
TAR375G0674 Trochodendron aralioides HOM05D000300 ORTHO05D000383 9.8e-14 80.9 140 34.3
Nn1g00783 Nelumbo nucifera HOM05D000300 ORTHO05D000383 1.3e-13 80.5 80 45.0
Medtr8g031520 Medicago truncatula HOM05D000300 ORTHO05D000383 1.7e-13 80.1 82 47.6
A10p00080 Brassica napus HOM05D000300 ORTHO05D000383 2.2e-13 79.7 95 45.3
BraA10t42286Z Brassica rapa HOM05D000300 ORTHO05D000383 2.2e-13 79.7 95 45.3
CDE04G3505 Ceratophyllum demersum HOM05D000300 ORTHO05D000383 2.2e-13 79.7 80 46.2
TWI14G1082 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 2.2e-13 79.7 85 45.9
FAN10G1019 Fragaria x ananassa HOM05D000300 ORTHO05D000383 2.8e-13 79.3 139 38.1
CARHR000170 Cardamine hirsuta HOM05D000300 ORTHO05D000383 3.7e-13 79.0 80 51.2
Ca_14795_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 3.7e-13 79.0 122 39.3
FAN10G1908 Fragaria x ananassa HOM05D000300 ORTHO05D000383 3.7e-13 79.0 125 39.2
Aa31LG1G11560 Aethionema arabicum HOM05D000300 ORTHO05D000383 4.9e-13 78.6 113 41.6
BcaB03g13636 Brassica carinata HOM05D000300 ORTHO05D000383 4.9e-13 78.6 89 48.3
BolC5t28792H Brassica oleracea HOM05D000300 ORTHO05D000383 4.9e-13 78.6 89 48.3
Manes.05G056400 Manihot esculenta HOM05D000300 ORTHO05D000383 4.9e-13 78.6 141 32.6
AT1G02150 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 6.3e-13 78.2 80 50.0
Ciclev10019658m.g Citrus clementina HOM05D000300 ORTHO05D000383 6.3e-13 78.2 87 43.7
HanXRQChr17g0562551 Helianthus annuus HOM05D000300 ORTHO05D000383 8.3e-13 77.8 142 40.8
C05p00050 Brassica napus HOM05D000300 ORTHO05D000383 1.1e-12 77.4 80 50.0
Carub.0001s0003 Capsella rubella HOM05D000300 ORTHO05D000383 1.1e-12 77.4 80 50.0
Thhalv10007383m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 1.1e-12 77.4 80 50.0
FvH4_7g09350 Fragaria vesca HOM05D000300 ORTHO05D000383 1.1e-12 77.4 125 39.2
FAN06G0367 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.1e-12 77.4 124 39.5
RcHm_v2.0_Chr1g0346001 Rosa chinensis HOM05D000300 ORTHO05D000383 1.1e-12 77.4 125 36.8
vmacro13512 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 1.1e-12 77.4 142 35.2
AL1G10070 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 1.4e-12 77.0 80 50.0
HanXRQChr11g0344091 Helianthus annuus HOM05D000300 ORTHO05D000383 1.4e-12 77.0 147 37.4
Prupe.2G121900 Prunus persica HOM05D000300 ORTHO05D000383 1.4e-12 77.0 124 39.5
Sp1g00100 Schrenkiella parvula HOM05D000300 ORTHO05D000383 1.8e-12 76.6 113 41.6
FAN03G1915 Fragaria x ananassa HOM05D000300 ORTHO05D000383 3.1e-12 75.9 125 39.2
MD02G1219200 Malus domestica HOM05D000300 ORTHO05D000383 3.1e-12 75.9 80 47.5
MD07G1097800 Malus domestica HOM05D000300 ORTHO05D000383 3.1e-12 75.9 130 37.7
FAN01G0489 Fragaria x ananassa HOM05D000300 ORTHO05D000383 4.1e-12 75.5 125 38.4
Lj9C554G0 Lonicera japonica HOM05D000300 ORTHO05D000383 4.1e-12 75.5 72 51.4
Sc26g0001670 Simmondsia chinensis HOM05D000300 ORTHO05D000383 1.2e-11 73.9 66 47.0
THA.LOC104814062 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 1.2e-11 73.9 68 57.4
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 2.0e-11 73.2 79 50.6
Lsat_1_v5_gn_4_39241 Lactuca sativa HOM05D000300 ORTHO05D000383 2.0e-11 73.2 142 34.5
Lsat_1_v5_gn_1_82301 Lactuca sativa HOM05D000300 ORTHO05D000383 2.7e-11 72.8 147 38.1
PSO063G2780 Papaver somniferum HOM05D000300 ORTHO05D000383 1.0e-10 70.9 140 37.1
PSO782G5511 Papaver somniferum HOM05D000300 ORTHO05D000383 8.6e-10 67.8 68 54.4
HPP92_001535 Vanilla planifolia HOM05D000300 ORTHO05D000383 2.5e-09 66.2 102 37.3
Hund17108 Selenicereus undatus HOM05D000300 ORTHO05D000383 3.3e-09 65.9 118 38.1
HanXRQChr16g0521181 Helianthus annuus HOM05D000300 ORTHO05D000383 5.6e-09 65.1 144 38.2
CANSAT25G1191 Cannabis sativa HOM05D000300 ORTHO05D000383 7.3e-09 64.7 141 34.0
ECA248G3482 Erigeron canadensis HOM05D000300 ORTHO05D000383 1.6e-08 63.5 73 43.8
ATR0665G093 Amborella trichopoda HOM05D000300 ORTHO05D000383 2.1e-08 63.2 87 39.1
Hund17107 Selenicereus undatus HOM05D000300 ORTHO05D000383 6.1e-08 61.6 66 43.9
Aqoxy3G02670 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 8.0e-08 61.2 65 36.9
Actinidia05776 Actinidia chinensis HOM05D000300 ORTHO05D000383 1.0e-07 60.8 53 47.2
GSVIVG01018303001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.8e-07 60.1 46 58.7
Lj7A548T51 Lonicera japonica HOM05D000300 ORTHO05D000383 2.3e-07 59.7 142 32.4
Aqoxy5G02726 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 3.0e-07 59.3 65 35.4
Cc02_g25250 Coffea canephora HOM05D000300 ORTHO05D000383 5.2e-07 58.5 40 70.0
vmacro13513 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 6.8e-07 58.2 70 41.4
Nitab4.5_0007060g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.5e-06 57.0 42 59.5
Dinv44046 Davidia involucrata HOM05D000300 ORTHO05D000383 2.6e-06 56.2 55 50.9
Oeu000004.1 Olea europaea HOM05D000300 ORTHO05D000383 9.8e-06 54.3 40 62.5


User provided reference genes

Program Settings