Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 4.4e-305 1050.4 520 100.0
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 7.1e-210 734.2 497 75.7
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 5.4e-202 708.0 517 69.6
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 2.4e-197 692.6 543 66.5
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 2.8e-190 669.1 534 65.0
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 4.0e-189 665.2 512 65.6
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 6.6e-184 647.9 506 64.4
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 1.9e-183 646.4 521 64.9
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 2.4e-181 639.4 490 66.5
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 8.4e-179 630.9 501 63.7
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 1.6e-177 626.7 507 62.3
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 3.5e-177 625.5 524 62.8
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 3.3e-175 619.0 510 62.0
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 5.6e-175 618.2 438 68.0
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 7.4e-175 617.8 508 63.0
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 1.3e-174 617.1 456 66.7
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 2.1e-174 616.3 537 60.9
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 2.8e-174 615.9 438 67.8
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 6.2e-174 614.8 439 67.9
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 1.4e-173 613.6 478 63.6
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 4.0e-173 612.1 516 62.0
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 5.3e-173 611.7 500 62.0
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 1.5e-172 610.1 514 61.9
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 2.0e-172 609.8 528 59.5
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 7.6e-172 607.8 441 68.0
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 8.4e-171 604.4 499 61.5
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 1.4e-170 603.6 430 69.3
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 7.1e-170 601.3 516 60.5
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 3.5e-169 599.0 466 63.9
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 7.9e-169 597.8 428 68.0
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 3.0e-168 595.9 510 60.4
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 6.7e-168 594.7 507 61.3
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 8.7e-168 594.3 487 63.4
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 8.7e-168 594.3 448 66.3
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 1.1e-167 594.0 503 59.8
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 1.1e-167 594.0 546 58.1
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 1.9e-167 593.2 508 61.2
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 2.5e-167 592.8 517 60.2
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.3e-167 592.0 448 66.1
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 5.7e-167 591.7 428 68.2
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 7.4e-167 591.3 504 61.5
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 9.6e-167 590.9 507 61.9
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 3.7e-166 589.0 504 60.9
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 4.8e-166 588.6 445 64.9
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 4.8e-166 588.6 523 60.2
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 8.2e-166 587.8 448 65.6
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.4e-165 587.0 457 64.8
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 2.4e-165 586.3 448 65.6
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 2.4e-165 586.3 453 64.5
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 3.1e-165 585.9 385 72.2
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 3.1e-165 585.9 504 60.1
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 4.1e-165 585.5 473 62.6
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 4.1e-165 585.5 519 59.7
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 9.0e-165 584.3 503 61.0
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 9.0e-165 584.3 524 58.4
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 2.0e-164 583.2 501 61.5
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.6e-164 582.8 448 65.2
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 3.4e-164 582.4 462 62.1
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 1.3e-163 580.5 512 59.0
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 1.7e-163 580.1 424 67.7
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 2.2e-163 579.7 490 62.9
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 2.2e-163 579.7 450 64.4
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 3.8e-163 578.9 488 62.3
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 3.8e-163 578.9 494 60.5
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 1.4e-162 577.0 371 72.8
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 5.5e-162 575.1 507 58.6
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 1.6e-161 573.5 470 62.3
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 2.1e-161 573.2 500 61.0
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 2.1e-161 573.2 510 59.0
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 3.5e-161 572.4 492 59.6
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 4.6e-161 572.0 465 62.4
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 1.0e-160 570.9 427 65.8
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 1.3e-160 570.5 499 61.5
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 1.3e-160 570.5 490 62.2
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 2.3e-160 569.7 488 61.5
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 2.3e-160 569.7 488 61.5
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 3.0e-160 569.3 502 61.0
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 1.3e-158 563.9 443 65.5
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.3e-158 563.9 497 59.2
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 1.1e-157 560.8 455 62.6
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 5.9e-156 555.1 528 55.7
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 7.2e-154 548.1 508 56.7
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 9.7e-151 537.7 430 63.7
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 1.3e-150 537.3 425 62.4
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 1.5e-148 530.4 359 69.6
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 1.0e-147 527.7 431 61.0
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 1.4e-146 523.9 447 60.2
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 1.6e-145 520.4 727 43.7
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 2.6e-143 513.1 501 53.5
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 3.1e-141 506.1 490 55.5
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 9.1e-141 504.6 398 63.6
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 1.2e-137 494.2 426 58.2
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 1.6e-137 493.8 453 59.2
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 1.8e-136 490.3 385 64.4
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 3.1e-133 479.6 420 60.0
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 2.3e-115 420.2 252 77.4
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 8.3e-110 401.7 335 59.1
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 9.2e-93 345.1 239 69.0
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 4.3e-90 336.3 192 80.2
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 9.9e-87 325.1 318 56.0
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 6.4e-86 322.4 307 57.0
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 3.0e-83 313.5 315 57.5
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 5.1e-83 312.8 183 79.8
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 2.8e-81 307.0 312 53.5
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 5.4e-77 292.7 480 37.9
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 4.8e-73 279.6 223 58.3
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 4.0e-72 276.6 162 79.0
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 8.7e-59 232.3 624 29.3
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 1.1e-56 225.3 600 30.2
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 4.2e-53 213.4 449 31.8
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 3.6e-44 183.7 228 48.2
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 4.1e-40 170.2 122 69.7
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 1.7e-38 164.9 364 31.0
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 5.1e-35 153.3 166 49.4
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 3.7e-25 120.6 82 65.9
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 2.5e-21 107.8 108 52.8
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 3.6e-20 104.0 59 76.3
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 2.6e-18 97.8 58 72.4
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 6.3e-17 93.2 139 38.8
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 8.5e-14 82.8 164 32.3
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 1.2e-12 79.0 93 55.9
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 1.8e-08 65.1 36 77.8
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 3.1e-08 64.3 64 56.2
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 7.0e-08 63.2 67 44.8
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 1.3e-06 58.9 39 61.5


User provided reference genes

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