Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19226 Striga asiatica HOM05D004530 ORTHO05D005839 0.0e+00 1102.4 584 100.0
MSTRG.20690 Avicennia marina HOM05D004530 ORTHO05D005839 3.1e-145 519.6 659 50.2
SalBow5G0820 Salvia bowleyana HOM05D004530 ORTHO05D005839 5.1e-132 475.7 709 45.4
Migut.B01535 Erythranthe guttata HOM05D004530 ORTHO05D005839 4.3e-115 419.5 517 51.1
Actinidia12143 Actinidia chinensis HOM05D004530 ORTHO05D005839 2.0e-91 340.9 660 39.1
Sopen01g036030 Solanum pennellii HOM05D004530 ORTHO05D005839 1.1e-89 335.1 656 38.9
Thecc.01G394900 Theobroma cacao HOM05D004530 ORTHO05D005839 1.0e-87 328.6 674 36.9
Hma1.2p1_0041F.1_g025350 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 1.4e-86 324.7 723 38.0
Dinv44062 Davidia involucrata HOM05D004530 ORTHO05D005839 3.2e-86 323.6 640 40.0
Solyc01g090230.3 Solanum lycopersicum HOM05D004530 ORTHO05D005839 2.1e-85 320.9 656 38.0
vmacro13497 Vaccinium macrocarpon HOM05D004530 ORTHO05D005839 2.1e-85 320.9 660 37.9
Atru.chr5.126 Acer truncatum HOM05D004530 ORTHO05D005839 1.4e-84 318.2 666 36.5
Gorai.004G166100 Gossypium raimondii HOM05D004530 ORTHO05D005839 3.0e-84 317.0 650 36.9
HanXRQChr03g0093061 Helianthus annuus HOM05D004530 ORTHO05D005839 3.3e-83 313.5 654 37.3
ECA240G1126 Erigeron canadensis HOM05D004530 ORTHO05D005839 1.1e-81 308.5 649 38.1
COL.COLO4_12407 Corchorus olitorius HOM05D004530 ORTHO05D005839 4.1e-81 306.6 673 35.2
Cc02_g25120 Coffea canephora HOM05D004530 ORTHO05D005839 1.5e-80 304.7 592 39.2
Gohir.A08G138600 Gossypium hirsutum HOM05D004530 ORTHO05D005839 3.5e-80 303.5 650 36.0
unitig_26.g9593 Utricularia gibba HOM05D004530 ORTHO05D005839 4.5e-80 303.1 615 37.4
CAN.G1473.6 Capsicum annuum HOM05D004530 ORTHO05D005839 5.9e-80 302.8 661 36.9
Lsat_1_v5_gn_3_126420 Lactuca sativa HOM05D004530 ORTHO05D005839 5.9e-80 302.8 660 38.5
Rhsim07G0036000 Rhododendron simsii HOM05D004530 ORTHO05D005839 5.0e-79 299.7 669 37.1
QL04p030285 Quercus lobata HOM05D004530 ORTHO05D005839 1.1e-78 298.5 663 35.3
Manes.01G274600 Manihot esculenta HOM05D004530 ORTHO05D005839 1.9e-78 297.7 663 35.1
GSVIVG01018280001 Vitis vinifera HOM05D004530 ORTHO05D005839 2.5e-78 297.4 655 36.0
Haze_02848 Corylus avellana HOM05D004530 ORTHO05D005839 2.3e-76 290.8 677 35.5
TAR375G0493 Trochodendron aralioides HOM05D004530 ORTHO05D005839 1.1e-75 288.5 673 34.9
Gohir.D12G099900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 2.0e-75 287.7 617 35.5
Duzib138G0269 Durio zibethinus HOM05D004530 ORTHO05D005839 4.4e-75 286.6 638 34.5
Gorai.008G108800 Gossypium raimondii HOM05D004530 ORTHO05D005839 4.4e-75 286.6 617 35.5
Eucgr.E01549 Eucalyptus grandis HOM05D004530 ORTHO05D005839 7.5e-75 285.8 665 35.5
TAR629G3313 Trochodendron aralioides HOM05D004530 ORTHO05D005839 1.8e-73 281.2 683 34.7
CiPaw.13G026100 Carya illinoinensis HOM05D004530 ORTHO05D005839 3.1e-73 280.4 646 35.6
Duzib133G0606 Durio zibethinus HOM05D004530 ORTHO05D005839 1.6e-72 278.1 718 33.3
Ciclev10019258m.g Citrus clementina HOM05D004530 ORTHO05D005839 2.0e-72 277.7 666 34.2
TPR.G33134 Trifolium pratense HOM05D004530 ORTHO05D005839 1.7e-71 274.6 651 35.3
Lj3g0003084 Lotus japonicus HOM05D004530 ORTHO05D005839 6.5e-71 272.7 620 37.1
Phvul.010G049900 Phaseolus vulgaris HOM05D004530 ORTHO05D005839 8.5e-71 272.3 640 35.9
TWI14G0541 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 1.5e-70 271.6 665 33.5
AUR62023408 Chenopodium quinoa HOM05D004530 ORTHO05D005839 5.5e-70 269.6 641 35.6
Ah.05g173100 Amaranthus hybridus HOM05D004530 ORTHO05D005839 7.2e-70 269.2 622 34.7
TWI59G1339 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 7.2e-70 269.2 686 34.1
AUR62013743 Chenopodium quinoa HOM05D004530 ORTHO05D005839 1.2e-69 268.5 668 34.7
PSO732G0778 Papaver somniferum HOM05D004530 ORTHO05D005839 1.2e-69 268.5 638 34.5
CsaV3_3G007220 Cucumis sativus L. HOM05D004530 ORTHO05D005839 1.6e-69 268.1 672 33.6
Glyma.10G120400 Glycine max HOM05D004530 ORTHO05D005839 1.6e-69 268.1 647 35.7
Gohir.D08G159900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 2.1e-69 267.7 436 41.1
arahy.Tifrunner.gnm1.ann1.WR8IC8 Arachis hypogaea HOM05D004530 ORTHO05D005839 2.7e-69 267.3 681 33.5
Ca_25804_v3 Cicer arietinum L. HOM05D004530 ORTHO05D005839 2.3e-68 264.2 640 35.5
MD07G1109200 Malus domestica HOM05D004530 ORTHO05D005839 2.3e-68 264.2 666 33.9
Medtr8g006895 Medicago truncatula HOM05D004530 ORTHO05D005839 8.8e-68 262.3 656 34.3
PSO675G1201 Papaver somniferum HOM05D004530 ORTHO05D005839 8.8e-68 262.3 638 33.5
arahy.Tifrunner.gnm1.ann1.BH8PB4 Arachis hypogaea HOM05D004530 ORTHO05D005839 2.0e-67 261.2 680 32.9
Sabra14G0034600 Salix brachista HOM05D004530 ORTHO05D005839 3.4e-67 260.4 683 34.0
MELO3C005943.2 Cucumis melo HOM05D004530 ORTHO05D005839 7.5e-67 259.2 654 33.6
Hund17085 Selenicereus undatus HOM05D004530 ORTHO05D005839 7.5e-67 259.2 697 32.6
EL10Ac1g00762 Beta vulgaris HOM05D004530 ORTHO05D005839 9.8e-67 258.8 699 33.2
Aqoxy7G00763 Aquilegia oxysepala HOM05D004530 ORTHO05D005839 1.3e-66 258.5 628 34.1
MD02G1212800 Malus domestica HOM05D004530 ORTHO05D005839 1.3e-66 258.5 644 35.1
Nn6g33827 Nelumbo nucifera HOM05D004530 ORTHO05D005839 2.2e-66 257.7 671 32.8
PGR042G2176 Punica granatum HOM05D004530 ORTHO05D005839 2.8e-66 257.3 683 34.3
Gorai.004G070300 Gossypium raimondii HOM05D004530 ORTHO05D005839 4.8e-66 256.5 575 36.0
Carub.0001s0010 Capsella rubella HOM05D004530 ORTHO05D005839 1.1e-65 255.4 636 32.9
Potri.014G047600 Populus trichocarpa HOM05D004530 ORTHO05D005839 1.8e-65 254.6 674 33.7
Sed0010787 Sechium edule HOM05D004530 ORTHO05D005839 2.4e-65 254.2 642 32.7
AL1G10110 Arabidopsis lyrata HOM05D004530 ORTHO05D005839 4.1e-65 253.4 652 32.8
A10p00110 Brassica napus HOM05D004530 ORTHO05D005839 1.2e-64 251.9 650 32.9
Glyma.20G070800 Glycine max HOM05D004530 ORTHO05D005839 1.2e-64 251.9 635 33.4
BraA10t42289Z Brassica rapa HOM05D004530 ORTHO05D005839 1.6e-64 251.5 646 33.6
Lalb_Chr12g0210571 Lupinus albus HOM05D004530 ORTHO05D005839 2.0e-64 251.1 657 34.4
VMungo0331G0336 Vigna mungo HOM05D004530 ORTHO05D005839 2.0e-64 251.1 638 33.1
C05p00080 Brassica napus HOM05D004530 ORTHO05D005839 3.5e-64 250.4 662 32.6
BolC5t28795H Brassica oleracea HOM05D004530 ORTHO05D005839 3.5e-64 250.4 662 32.6
AUR62043872 Chenopodium quinoa HOM05D004530 ORTHO05D005839 7.7e-64 249.2 658 34.2
Lalb_Chr07g0195421 Lupinus albus HOM05D004530 ORTHO05D005839 7.7e-64 249.2 672 33.0
FAN06G5079 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.2e-63 247.7 651 32.9
FvH4_7g10200 Fragaria vesca HOM05D004530 ORTHO05D005839 3.8e-63 246.9 651 32.9
FAN10G4098 Fragaria x ananassa HOM05D004530 ORTHO05D005839 6.5e-63 246.1 668 33.5
AT1G02120 Arabidopsis thaliana HOM05D004530 ORTHO05D005839 8.5e-63 245.7 450 39.1
FAN10G1666 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.1e-62 245.4 668 33.5
BcaB03g13633 Brassica carinata HOM05D004530 ORTHO05D005839 7.2e-62 242.7 648 32.6
Thhalv10007106m.g Eutrema salsugineum HOM05D004530 ORTHO05D005839 1.2e-61 241.9 643 32.5
CARHR000210 Cardamine hirsuta HOM05D004530 ORTHO05D005839 2.7e-61 240.7 648 34.1
RcHm_v2.0_Chr1g0347921 Rosa chinensis HOM05D004530 ORTHO05D005839 6.1e-61 239.6 653 33.2
THA.LOC104817000 Tarenaya hassleriana HOM05D004530 ORTHO05D005839 4.0e-60 236.9 663 33.0
FAN03G1354 Fragaria x ananassa HOM05D004530 ORTHO05D005839 6.8e-60 236.1 644 32.8
FAN01G0552 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.5e-59 235.0 665 32.3
Psat4g224840 Pisum sativum HOM05D004530 ORTHO05D005839 9.8e-59 232.3 599 33.6
Hund27405 Selenicereus undatus HOM05D004530 ORTHO05D005839 1.3e-58 231.9 655 33.4
Prupe.2G131900 Prunus persica HOM05D004530 ORTHO05D005839 2.2e-58 231.1 464 37.7
Gohir.A12G097000 Gossypium hirsutum HOM05D004530 ORTHO05D005839 2.8e-58 230.7 591 33.7
Gohir.D08G067550 Gossypium hirsutum HOM05D004530 ORTHO05D005839 3.7e-58 230.3 563 35.2
PSO832G0798 Papaver somniferum HOM05D004530 ORTHO05D005839 6.3e-58 229.6 603 33.0
ATR0057G115 Amborella trichopoda HOM05D004530 ORTHO05D005839 2.4e-57 227.6 645 30.9
Nitab4.5_0007027g0030 Nicotiana tabacum HOM05D004530 ORTHO05D005839 3.1e-57 227.3 396 41.4
Potri.002G137800 Populus trichocarpa HOM05D004530 ORTHO05D005839 1.5e-54 218.4 454 35.9
Nitab4.5_0000920g0020 Nicotiana tabacum HOM05D004530 ORTHO05D005839 2.5e-54 217.6 366 42.9
Sc26g0001580 Simmondsia chinensis HOM05D004530 ORTHO05D005839 5.6e-54 216.5 448 37.5
Nn1g00849 Nelumbo nucifera HOM05D004530 ORTHO05D005839 2.3e-52 211.1 659 30.7
MBI04_g41763_MAGBIO Magnolia biondii HOM05D004530 ORTHO05D005839 8.9e-52 209.1 735 28.7
Gohir.A08G058400 Gossypium hirsutum HOM05D004530 ORTHO05D005839 9.8e-51 205.7 548 32.1
CDE06G0463 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.7e-50 204.9 626 30.4
FAN06G2217 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.9e-50 204.1 660 31.4
DCAR_029469 Daucus carota HOM05D004530 ORTHO05D005839 3.0e-47 194.1 650 30.0
Zm00001eb105340 Zea mays HOM05D004530 ORTHO05D005839 5.0e-47 193.4 657 30.0
Zm00001eb321770 Zea mays HOM05D004530 ORTHO05D005839 4.9e-42 176.8 668 29.3
CDE11G0737 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 6.4e-42 176.4 400 34.2
HPP92_022509 Vanilla planifolia HOM05D004530 ORTHO05D005839 2.0e-40 171.4 451 34.4
ClCG05G000120 Citrullus lanatus HOM05D004530 ORTHO05D005839 5.6e-38 163.3 536 30.2
Mapoly0083s0023 Marchantia polymorpha HOM05D004530 ORTHO05D005839 2.8e-37 161.0 682 27.0
Pp3c9_25660 Physcomitrium patens HOM05D004530 ORTHO05D005839 1.1e-36 159.1 401 33.2
CSS0020970 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 1.7e-34 151.8 481 31.4
CSS0024507 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 1.7e-34 151.8 479 31.5
AagrBONN_evm.TU.Sc2ySwM_117.1176 Anthoceros agrestis HOM05D004530 ORTHO05D005839 1.9e-30 138.3 418 29.9
CDE06G1928 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.9e-30 138.3 329 34.7
SMO228G0106 Selaginella moellendorffii HOM05D004530 ORTHO05D005839 5.2e-28 130.2 627 27.6
Aa31LG1G11490 Aethionema arabicum HOM05D004530 ORTHO05D005839 1.4e-25 122.1 275 34.5
Migut.B01536 Erythranthe guttata HOM05D004530 ORTHO05D005839 2.4e-25 121.3 115 66.1
Aa31LG1G11480 Aethionema arabicum HOM05D004530 ORTHO05D005839 5.4e-25 120.2 346 31.8
CBR_g3459 Chara braunii HOM05D004530 ORTHO05D000353 9.6e-22 109.4 384 27.1
Ah.05g174030 Amaranthus hybridus HOM05D004530 ORTHO05D005839 2.1e-21 108.2 232 39.7
Lj9A557G31 Lonicera japonica HOM05D004530 ORTHO05D005839 6.2e-21 106.7 220 35.9
Peaxi162Scf00475g00418 Petunia axillaris HOM05D004530 ORTHO05D005839 2.4e-20 104.8 250 34.4
SEGI_01894 Sequoiadendron giganteum HOM05D004530 ORTHO05D005839 1.1e-17 95.9 63 69.8
Cc00_g35630 Coffea canephora HOM05D004530 ORTHO05D005839 4.2e-17 94.0 115 51.3
Cre16.g664050 Chlamydomonas reinhardtii HOM05D004530 ORTHO05D005839 5.1e-15 87.0 399 26.1
TPR.G23922 Trifolium pratense HOM05D004530 ORTHO05D005839 7.3e-14 83.2 186 33.9
Ah.05g174020 Amaranthus hybridus HOM05D004530 ORTHO05D005839 6.2e-13 80.1 277 27.4
CSS0047129 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 6.2e-13 80.1 53 71.7
CSS0049288 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 6.2e-13 80.1 53 71.7
CiPaw.03G262200 Carya illinoinensis HOM05D004530 ORTHO05D005839 8.1e-13 79.7 177 35.6
Lj7A546T15 Lonicera japonica HOM05D004530 ORTHO05D005839 2.6e-11 74.7 180 32.8
Os07g0491600 Oryza sativa ssp. japonica HOM05D004530 ORTHO05D005839 5.8e-11 73.6 245 26.5
Cpa.g.sc22.81 Carica papaya HOM05D004530 ORTHO05D005839 7.6e-11 73.2 269 32.3
CDE07G0055 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.7e-10 72.0 101 40.6
SEGI_20424 Sequoiadendron giganteum HOM05D004530 ORTHO05D005839 3.8e-10 70.9 229 28.8
MCO09G309 Micromonas commoda HOM05D004530 ORTHO05D005839 4.9e-10 70.5 108 37.0
Cpa.g.sc22.80 Carica papaya HOM05D004530 ORTHO05D005839 1.1e-09 69.3 79 49.4
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 1.1e-09 69.3 248 30.2
Hma1.2p1_0041F.1_g025340 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 4.2e-09 67.4 83 49.4
Lj7A546T14 Lonicera japonica HOM05D004530 ORTHO05D005839 7.9e-08 63.2 125 32.8
Cfa011069 Carpinus fangiana HOM05D004530 ORTHO05D005839 2.3e-07 61.6 116 37.1
FAN08G3540 Fragaria x ananassa HOM05D002176 ORTHO05D002598 1.5e-06 58.9 68 45.6
FvH4_5g06260 Fragaria vesca HOM05D002176 ORTHO05D002598 1.9e-06 58.5 68 44.1
FAN18G2293 Fragaria x ananassa HOM05D002176 ORTHO05D002598 1.9e-06 58.5 68 44.1
COL.COLO4_09519 Corchorus olitorius HOM05D033731 ORTHO05D005839 3.3e-06 57.8 40 70.0
TWI39G1056 Tripterygium wilfordii HOM05D002176 ORTHO05D002598 7.4e-06 56.6 68 44.1
CANSAT80G2112 Cannabis sativa HOM05D002176 ORTHO05D002598 9.6e-06 56.2 53 49.1
Nn3g16704 Nelumbo nucifera HOM05D002176 ORTHO05D002598 9.6e-06 56.2 68 44.1


User provided reference genes

Program Settings