Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 4.2e-87 324.7 169 100.0
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 6.3e-83 310.8 169 94.1
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 2.8e-75 285.4 169 84.6
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 2.0e-73 279.3 169 82.8
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.0e-72 276.9 163 85.3
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 4.4e-68 261.5 169 75.7
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 9.7e-68 260.4 162 80.9
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 2.8e-67 258.8 164 78.7
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 1.4e-66 256.5 164 78.0
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 3.1e-66 255.4 166 76.5
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 7.0e-66 254.2 167 76.0
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.0e-65 252.7 166 77.1
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 2.6e-65 252.3 169 75.1
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 5.9e-65 251.1 169 73.4
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 7.7e-65 250.8 169 75.7
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 3.8e-64 248.4 166 75.3
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 5.0e-64 248.1 164 76.8
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 6.5e-64 247.7 166 77.7
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.1e-63 246.9 166 74.1
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.4e-63 246.5 166 74.7
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.5e-63 245.7 166 74.7
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 3.2e-63 245.4 166 75.9
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 3.2e-63 245.4 166 74.7
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 3.2e-63 245.4 169 72.2
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 5.5e-63 244.6 164 76.8
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 7.2e-63 244.2 164 76.2
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 9.4e-63 243.8 166 72.9
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 9.4e-63 243.8 163 73.6
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.2e-62 243.4 164 75.0
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.2e-62 243.4 163 73.6
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 1.2e-62 243.4 163 74.2
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.6e-62 243.0 164 75.0
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.6e-62 243.0 164 75.0
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.6e-62 243.0 164 74.4
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 3.6e-62 241.9 166 75.3
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 6.1e-62 241.1 166 75.3
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 6.1e-62 241.1 168 72.6
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 1.4e-61 240.0 166 74.1
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 1.4e-61 240.0 166 74.1
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 1.4e-61 240.0 166 74.1
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.8e-61 239.6 192 67.7
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.3e-61 239.2 165 73.3
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 2.3e-61 239.2 168 70.2
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 5.2e-61 238.0 166 72.9
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 5.2e-61 238.0 160 74.4
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 6.7e-61 237.7 163 74.8
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 2.0e-60 236.1 172 68.6
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 2.6e-60 235.7 166 71.7
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 4.4e-60 235.0 166 72.3
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.7e-60 234.6 168 69.0
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 7.4e-60 234.2 162 72.2
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 9.7e-60 233.8 166 71.1
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 9.7e-60 233.8 168 68.5
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.3e-59 233.4 166 71.1
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.3e-59 233.4 166 71.1
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.3e-59 233.4 166 71.1
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.3e-59 233.4 166 71.1
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.8e-59 232.3 166 71.1
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 3.7e-59 231.9 166 70.5
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 3.7e-59 231.9 166 68.7
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 6.3e-59 231.1 164 70.7
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 6.3e-59 231.1 153 76.5
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 6.3e-59 231.1 203 61.6
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 8.2e-59 230.7 166 69.9
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.4e-58 229.9 166 71.7
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 1.4e-58 229.9 163 71.8
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.8e-58 229.6 166 68.1
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.2e-57 226.9 166 69.9
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 3.5e-57 225.3 166 67.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.9e-57 224.6 154 75.3
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.0e-56 223.8 166 69.9
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.1e-55 220.3 159 68.6
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 1.1e-55 220.3 164 66.5
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 5.5e-55 218.0 186 62.4
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 2.1e-54 216.1 167 65.9
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.7e-54 215.7 166 64.5
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 6.1e-54 214.5 149 73.8
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.0e-53 213.8 162 68.5
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.8e-53 213.0 190 60.0
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.2e-52 210.3 166 60.8
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 4.4e-52 208.4 137 76.6
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.2e-51 206.1 161 64.6
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 7.0e-50 201.1 190 55.8
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 2.0e-49 199.5 158 63.9
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.7e-49 199.1 162 63.0
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 7.7e-49 197.6 158 63.3
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 2.9e-48 195.7 139 71.2
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.5e-47 193.4 137 67.2
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.5e-47 193.4 158 62.0
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 5.5e-47 191.4 164 61.0
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.2e-46 190.3 175 59.4
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.6e-46 188.7 172 55.8
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 8.0e-46 187.6 153 58.8
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 8.0e-46 187.6 153 58.8
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 1.0e-45 187.2 153 58.2
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 1.0e-45 187.2 153 58.2
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.4e-45 186.8 139 64.7
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 1.8e-45 186.4 139 67.6
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 5.2e-45 184.9 156 56.4
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 5.2e-45 184.9 152 58.6
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.2e-44 183.7 126 69.0
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.0e-44 183.0 164 54.9
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 3.4e-44 182.2 136 66.2
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 3.4e-44 182.2 118 76.3
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.7e-44 181.4 164 54.3
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 1.7e-43 179.9 122 74.6
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 2.2e-43 179.5 153 55.6
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.2e-43 179.5 169 52.7
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 2.2e-43 179.5 116 76.7
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 6.3e-43 177.9 128 68.0
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.3e-43 177.9 164 54.3
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 8.3e-43 177.6 117 76.1
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 9.1e-42 174.1 127 70.9
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.2e-41 173.7 159 52.8
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 2.7e-41 172.6 140 57.9
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 5.5e-39 164.9 116 70.7
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 9.5e-39 164.1 116 71.6
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.2e-38 163.7 116 73.3
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 6.1e-38 161.4 137 62.0
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.7e-35 153.3 163 47.9
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.4e-34 148.3 156 51.9
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.7e-33 146.0 118 61.0
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 8.6e-32 141.0 160 48.1
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 7.3e-31 137.9 163 42.9
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 6.1e-30 134.8 125 58.4
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 6.1e-30 134.8 92 69.6
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.8e-29 131.3 138 52.9
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 8.9e-29 131.0 88 76.1
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 3.4e-28 129.0 122 53.3
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 3.2e-26 122.5 119 58.0
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.6e-25 120.2 118 51.7
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.7e-25 119.4 143 46.9
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 3.5e-25 119.0 75 76.0
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 8.6e-24 114.4 163 46.0
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 2.8e-22 109.4 70 75.7
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.4e-21 107.1 95 53.7
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.8e-21 106.7 84 64.3
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.9e-21 104.4 154 42.2
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 3.7e-19 99.0 74 62.2
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 3.7e-19 99.0 74 62.2
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 3.7e-19 99.0 74 62.2
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 2.7e-17 92.8 163 39.9
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.0e-17 91.7 92 53.3
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 4.3e-15 85.5 71 57.7
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 3.1e-13 79.3 52 69.2
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 4.0e-13 79.0 69 62.3
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.2e-12 77.4 63 63.5
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 1.5e-12 77.0 54 74.1
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 3.4e-12 75.9 49 75.5
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 3.4e-12 75.9 49 75.5
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.4e-12 75.9 75 56.0
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 7.1e-10 68.2 48 72.9
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 2.1e-09 66.6 58 58.6
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 5.6e-07 58.5 43 69.8
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 7.3e-07 58.2 58 48.3
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 6.2e-06 55.1 34 73.5


User provided reference genes

Program Settings