Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 1.9e-253 879.0 565 100.0
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 1.9e-136 490.3 516 64.9
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 2.1e-135 486.9 591 62.1
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 3.0e-129 466.5 562 64.6
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 3.3e-120 436.4 532 58.1
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 4.2e-115 419.5 561 55.4
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 2.6e-109 400.2 518 57.1
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 1.7e-108 397.5 434 66.1
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 1.9e-104 384.0 510 55.1
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 1.6e-103 380.9 535 53.6
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 1.6e-103 380.9 529 54.8
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 2.8e-103 380.2 494 58.7
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 4.8e-103 379.4 503 60.4
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 1.1e-102 378.3 442 64.9
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 3.1e-102 376.7 510 54.3
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 1.2e-101 374.8 479 58.7
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 2.0e-101 374.0 537 58.3
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 4.5e-101 372.9 510 55.3
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 4.5e-101 372.9 463 62.9
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 4.5e-101 372.9 514 55.3
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 5.9e-101 372.5 508 62.2
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 7.6e-101 372.1 548 52.6
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 1.0e-100 371.7 481 56.5
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 1.3e-100 371.3 476 58.6
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 1.7e-100 370.9 514 54.3
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 1.7e-100 370.9 534 52.2
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 1.7e-100 370.9 442 68.3
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 5.0e-100 369.4 440 65.5
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 6.5e-100 369.0 503 55.5
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.4e-99 367.9 510 54.7
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 1.4e-99 367.9 463 62.4
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 1.9e-99 367.5 463 62.4
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 1.9e-99 367.5 549 55.6
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 1.2e-98 364.8 508 54.1
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.2e-98 364.8 442 65.6
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 2.1e-98 364.0 439 62.2
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 3.6e-98 363.2 514 53.9
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 3.6e-98 363.2 458 61.6
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 6.1e-98 362.5 497 53.7
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.3e-97 361.3 513 50.3
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 1.9e-96 357.5 502 59.2
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 4.3e-96 356.3 474 58.0
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 5.7e-96 355.9 442 59.3
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 1.1e-94 351.7 534 46.6
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 4.1e-94 349.7 453 58.5
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 5.3e-94 349.4 474 55.9
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 3.4e-93 346.7 463 65.9
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 8.5e-92 342.0 443 57.6
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 4.2e-91 339.7 441 58.3
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 7.2e-91 339.0 524 61.5
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 1.2e-90 338.2 470 56.6
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 2.7e-90 337.0 443 56.9
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 1.4e-89 334.7 442 62.4
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 3.0e-89 333.6 447 57.3
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 3.9e-89 333.2 442 67.0
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 6.7e-89 332.4 437 56.1
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 1.3e-87 328.2 441 57.4
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 1.3e-87 328.2 439 57.6
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 1.8e-86 324.3 437 56.5
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 3.1e-86 323.6 439 41.7
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 2.0e-85 320.9 423 55.8
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 1.0e-84 318.5 442 61.5
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 1.7e-84 317.8 406 65.8
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 5.0e-84 316.2 437 55.4
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 2.5e-83 313.9 436 58.7
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 2.1e-82 310.8 437 56.3
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 3.6e-82 310.1 380 62.4
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 8.0e-82 308.9 442 54.3
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 1.4e-81 308.1 483 53.2
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 1.8e-81 307.8 442 52.9
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 2.3e-81 307.4 437 61.3
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 3.9e-81 306.6 485 49.5
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 5.7e-80 302.8 442 53.6
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 9.7e-80 302.0 433 54.3
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 1.7e-79 301.2 501 54.9
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 8.2e-79 298.9 501 53.9
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 9.1e-78 295.4 516 50.4
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 3.5e-77 293.5 518 54.4
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 1.3e-76 291.6 504 54.4
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 3.2e-75 287.0 504 54.0
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 3.6e-74 283.5 442 57.9
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 5.2e-73 279.6 501 48.7
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 1.3e-71 275.0 458 54.1
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 2.8e-71 273.9 536 52.4
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 3.7e-71 273.5 504 50.0
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 1.4e-70 271.6 445 48.1
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 9.4e-67 258.8 504 50.6
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 4.4e-64 250.0 530 48.3
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 7.5e-64 249.2 472 49.6
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 2.2e-63 247.7 382 38.5
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 2.2e-63 247.7 382 38.5
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 4.8e-63 246.5 466 57.3
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 2.0e-56 224.6 411 52.1
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 5.4e-54 216.5 440 48.4
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 5.4e-54 216.5 440 48.4
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 8.0e-50 202.6 166 60.2
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 8.0e-50 202.6 166 60.2
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 1.9e-46 191.4 219 47.9
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 3.3e-43 180.6 167 52.1
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 3.3e-43 180.6 440 45.0
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 1.6e-42 178.3 168 51.8
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 9.8e-40 169.1 167 47.9
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.8e-33 148.3 168 48.2
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 2.5e-27 127.9 169 46.2
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.6e-10 72.0 111 36.9
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.6e-10 72.0 111 36.9
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 1.2e-08 65.9 139 28.8
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 2.0e-08 65.1 147 27.9
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 1.7e-07 62.0 139 26.6
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.7e-07 62.0 145 29.0
AagrBONN_evm.TU.Sc2ySwM_368.547 Anthoceros agrestis HOM05D007093 ORTHO05D008910 2.9e-07 61.2 140 27.1
Sed0007804 Sechium edule HOM05D006596 ORTHO05D008497 2.9e-07 61.2 104 32.7
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 3.8e-07 60.8 128 32.0
Oeu041338.1 Olea europaea HOM05D000001 ORTHO05D000003 8.4e-07 59.7 109 32.1
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.1e-06 59.3 159 26.4
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 1.1e-06 59.3 127 31.5
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.9e-06 58.5 159 26.4
TWI38G0505 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 5.4e-06 57.0 150 24.7
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 5.4e-06 57.0 147 27.9
EL10Ac8g18335 Beta vulgaris HOM05D007335 ORTHO05D009113 7.1e-06 56.6 91 38.5
BcaB05g25293 Brassica carinata HOM05D000891 ORTHO05D000761 7.1e-06 56.6 156 25.6
Ah.09g230250 Amaranthus hybridus HOM05D007335 ORTHO05D009113 9.3e-06 56.2 91 37.4
SGA_v2.0_scaffold44G16801 Striga asiatica HOM05D006156 ORTHO05D007699 9.3e-06 56.2 93 33.3


User provided reference genes

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