Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 1.5e-153 546.6 379 100.0
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 2.3e-32 144.1 261 42.5
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 1.5e-28 131.3 244 43.0
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.0e-24 118.6 225 37.3
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.3e-24 117.5 255 34.5
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 2.3e-24 117.5 234 35.5
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 5.1e-24 116.3 253 36.8
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 2.1e-22 110.9 228 34.2
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 4.7e-22 109.8 263 34.6
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 6.2e-22 109.4 184 39.1
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.1e-21 108.6 246 33.7
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.4e-21 108.2 321 31.8
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.8e-21 107.8 291 31.3
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 2.4e-21 107.5 166 40.4
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 5.3e-21 106.3 177 48.0
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 6.9e-21 105.9 254 33.5
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.5e-20 104.8 275 32.0
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 2.0e-20 104.4 243 33.7
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.6e-20 104.0 184 41.3
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.6e-20 104.0 323 29.4
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 3.4e-20 103.6 233 39.5
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 4.4e-20 103.2 175 40.0
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 4.4e-20 103.2 191 44.5
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 1.3e-19 101.7 181 47.5
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.3e-19 101.7 198 37.4
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 1.7e-19 101.3 271 31.7
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 2.2e-19 100.9 167 37.1
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 2.2e-19 100.9 167 37.1
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 8.4e-19 99.0 176 38.6
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 8.4e-19 99.0 287 31.4
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.1e-18 98.6 273 33.3
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 1.4e-18 98.2 176 38.1
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.4e-18 98.2 222 36.0
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 5.4e-18 96.3 188 37.2
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 7.1e-18 95.9 252 34.5
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 7.1e-18 95.9 261 33.7
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 7.1e-18 95.9 176 34.7
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 9.3e-18 95.5 270 30.7
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 9.3e-18 95.5 204 35.3
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.2e-17 95.1 216 37.0
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 2.1e-17 94.4 183 35.0
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 2.7e-17 94.0 326 28.5
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 3.5e-17 93.6 275 31.6
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 3.5e-17 93.6 193 33.7
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 4.6e-17 93.2 317 30.9
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 6.0e-17 92.8 195 36.4
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.0e-16 92.0 245 32.2
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.0e-16 92.0 215 33.5
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.0e-16 92.0 260 32.3
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 1.7e-16 91.3 212 35.4
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 2.3e-16 90.9 193 36.8
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 2.3e-16 90.9 229 35.8
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 3.0e-16 90.5 202 31.2
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 3.9e-16 90.1 201 34.3
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 5.1e-16 89.7 250 31.2
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 6.6e-16 89.4 187 34.8
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 8.7e-16 89.0 320 29.4
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.1e-15 88.6 176 35.2
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 1.5e-15 88.2 211 34.6
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 4.3e-15 86.7 211 34.1
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 4.3e-15 86.7 179 34.1
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 5.6e-15 86.3 182 36.8
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.6e-14 84.7 170 34.1
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 2.8e-14 84.0 234 29.9
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 2.8e-14 84.0 185 33.0
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 2.8e-14 84.0 184 34.8
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 3.6e-14 83.6 304 31.2
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 4.8e-14 83.2 170 33.5
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 4.8e-14 83.2 202 32.2
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 6.2e-14 82.8 211 32.2
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 6.2e-14 82.8 179 34.1
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 6.2e-14 82.8 224 33.0
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 4.0e-13 80.1 170 36.5
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 5.3e-13 79.7 172 33.1
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 6.9e-13 79.3 192 34.4
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 9.0e-13 79.0 240 30.4
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 1.2e-12 78.6 176 33.0
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 2.6e-12 77.4 171 31.0
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 2.6e-12 77.4 264 28.8
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.4e-12 77.0 189 31.7
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 3.4e-12 77.0 241 35.7
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.4e-12 77.0 237 30.4
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 4.5e-12 76.6 214 32.2
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 4.5e-12 76.6 157 33.8
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 4.5e-12 76.6 152 28.3
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 4.5e-12 76.6 229 29.3
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 5.8e-12 76.3 189 31.7
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 5.8e-12 76.3 189 31.7
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 5.8e-12 76.3 178 34.8
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 7.6e-12 75.9 198 40.9
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 7.6e-12 75.9 233 28.8
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 9.9e-12 75.5 205 30.2
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 9.9e-12 75.5 161 34.2
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 1.3e-11 75.1 172 31.4
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.3e-11 75.1 172 31.4
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 2.2e-11 74.3 216 29.6
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 2.9e-11 73.9 185 33.5
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 2.9e-11 73.9 245 31.8
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 3.8e-11 73.6 231 29.0
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 3.8e-11 73.6 172 33.1
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 4.9e-11 73.2 151 31.8
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 6.4e-11 72.8 155 32.9
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 1.1e-10 72.0 184 33.2
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.4e-10 71.6 210 30.5
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 3.2e-10 70.5 210 30.0
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 3.2e-10 70.5 160 31.9
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 4.2e-10 70.1 253 30.4
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 5.4e-10 69.7 151 29.8
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 7.1e-10 69.3 186 29.0
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 9.3e-10 68.9 247 27.9
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 9.3e-10 68.9 187 31.0
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 1.2e-09 68.6 172 34.3
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 4.6e-09 66.6 158 30.4
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 1.0e-08 65.5 177 37.9
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 1.3e-08 65.1 170 31.2
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 1.8e-08 64.7 149 29.5
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.8e-08 64.7 149 29.5
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 1.8e-08 64.7 149 29.5
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 2.3e-08 64.3 165 29.7
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 2.3e-08 64.3 186 32.3
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.9e-08 63.5 149 28.9
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 5.1e-08 63.2 149 28.9
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 5.1e-08 63.2 225 29.8
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 8.7e-08 62.4 167 24.0
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 1.1e-07 62.0 60 48.3
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 1.5e-07 61.6 191 28.8
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 4.3e-07 60.1 157 26.1
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 5.6e-07 59.7 216 28.2
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 5.6e-07 59.7 149 27.5
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 1.3e-06 58.5 189 25.4
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 2.8e-06 57.4 178 25.8
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 3.7e-06 57.0 171 26.9
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 3.7e-06 57.0 108 34.3
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 3.7e-06 57.0 197 25.4
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 4.8e-06 56.6 78 41.0


User provided reference genes

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