Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 4.8e-148 527.7 251 100.0
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 1.1e-104 383.6 251 70.5
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 1.4e-102 376.7 251 70.1
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 1.3e-100 370.2 251 67.7
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 1.4e-99 366.7 251 66.9
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 1.9e-99 366.3 248 67.7
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 9.3e-99 364.0 252 67.1
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.2e-98 363.6 252 67.1
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 1.6e-98 363.2 250 66.0
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 2.1e-98 362.8 252 66.7
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 4.6e-98 361.7 251 65.7
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 6.0e-98 361.3 250 66.0
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 1.3e-97 360.1 248 66.1
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.7e-97 359.8 251 63.7
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 3.0e-97 359.0 251 66.5
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 6.6e-97 357.8 245 66.9
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 8.7e-97 357.5 251 66.1
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 8.7e-97 357.5 251 65.3
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 8.7e-97 357.5 252 65.5
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 1.5e-96 356.7 252 65.1
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.9e-96 356.3 251 65.7
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 1.9e-96 356.3 251 66.1
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.9e-96 356.3 251 62.5
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 3.3e-96 355.5 251 65.3
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.3e-96 355.5 251 64.9
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 4.3e-96 355.1 248 66.1
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 4.3e-96 355.1 251 65.3
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.6e-96 354.8 251 64.9
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 5.6e-96 354.8 251 64.9
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 7.3e-96 354.4 252 64.7
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 7.3e-96 354.4 252 64.7
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 2.1e-95 352.8 251 65.7
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.1e-95 352.8 251 65.7
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 4.8e-95 351.7 251 63.7
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 4.8e-95 351.7 252 66.3
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 4.8e-95 351.7 251 64.9
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 8.1e-95 350.9 251 64.9
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.4e-94 350.1 251 64.9
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.4e-94 350.1 247 64.4
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 2.4e-94 349.4 251 65.3
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 3.1e-94 349.0 253 63.6
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 4.0e-94 348.6 251 64.9
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 1.2e-93 347.1 251 65.3
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.5e-93 346.7 251 63.7
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 3.4e-93 345.5 252 64.3
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 7.6e-93 344.4 251 62.9
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 7.6e-93 344.4 248 63.7
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 1.7e-92 343.2 253 63.6
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 2.2e-92 342.8 251 63.3
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 4.9e-92 341.7 251 63.7
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 4.9e-92 341.7 253 61.3
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 6.4e-92 341.3 251 64.5
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 1.1e-91 340.5 251 64.1
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 1.9e-91 339.7 253 62.8
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 2.4e-91 339.3 251 63.3
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 4.2e-91 338.6 251 61.8
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 7.1e-91 337.8 253 61.3
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 9.3e-91 337.4 253 60.9
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 9.3e-91 337.4 251 63.7
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 9.3e-91 337.4 253 62.8
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 1.6e-90 336.7 253 62.1
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.6e-90 336.7 253 61.7
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.6e-90 336.7 247 62.8
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 1.6e-90 336.7 253 61.3
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 2.1e-90 336.3 253 61.7
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.7e-90 335.9 251 61.4
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 7.9e-90 334.3 251 61.4
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.0e-89 332.4 251 61.4
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 5.1e-89 331.6 253 61.7
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 5.1e-89 331.6 251 61.8
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 6.6e-89 331.3 251 60.6
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 1.5e-88 330.1 251 61.8
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 2.5e-88 329.3 255 61.6
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 9.6e-88 327.4 253 60.1
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 6.2e-87 324.7 253 58.9
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 6.2e-87 324.7 253 58.9
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 6.2e-87 324.7 253 58.9
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 6.2e-87 324.7 253 58.9
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 6.2e-87 324.7 246 61.4
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 8.1e-87 324.3 253 58.9
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 1.1e-86 323.9 251 60.6
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 1.8e-86 323.2 253 58.5
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 1.8e-86 323.2 251 62.2
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 6.9e-86 321.2 251 61.8
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 9.0e-86 320.9 254 59.4
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 2.6e-85 319.3 246 61.4
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 4.5e-85 318.5 253 58.9
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 5.8e-85 318.2 253 57.3
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 5.8e-85 318.2 253 58.1
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 3.8e-84 315.5 251 59.8
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 6.4e-84 314.7 250 58.0
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 8.4e-84 314.3 249 59.0
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 5.4e-83 311.6 263 58.2
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 9.3e-83 310.8 250 57.6
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 1.6e-82 310.1 247 57.5
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 2.7e-82 309.3 228 64.0
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 3.1e-78 295.8 240 57.9
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 2.6e-77 292.7 238 55.0
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 5.8e-77 291.6 249 55.8
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 7.6e-77 291.2 249 55.8
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 8.4e-76 287.7 248 54.8
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 2.5e-75 286.2 248 54.4
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 5.7e-72 275.0 204 60.8
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 7.6e-69 264.6 250 51.6
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 1.6e-66 256.9 250 47.6
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 5.5e-59 231.9 267 43.8
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 6.1e-58 228.4 250 45.2
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 3.8e-52 209.1 260 46.9
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 7.9e-50 201.4 155 59.4
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 2.0e-48 196.8 139 64.7
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 2.8e-47 193.0 286 42.7
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 4.4e-40 169.1 113 68.1
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 1.7e-36 157.1 99 74.7
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 5.0e-28 129.0 95 58.9
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 7.0e-22 108.6 73 61.6
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 3.3e-19 99.8 100 52.0
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 2.8e-18 96.7 153 39.9
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.1e-14 84.7 56 64.3
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 1.6e-13 80.9 50 66.0
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 7.8e-13 78.6 45 71.1
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 5.8e-08 62.4 123 32.5
AagrBONN_evm.TU.Sc2ySwM_368.1069 Anthoceros agrestis HOM05D027965 ORTHO05D007451 3.7e-07 59.7 109 33.0
Mapoly0033s0082 Marchantia polymorpha HOM05D027965 ORTHO05D048753 1.9e-06 57.4 99 37.4


User provided reference genes

Program Settings