Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 3.0e-168 595.1 308 100.0
SGA_v2.0_scaffold52G19079 Striga asiatica HOM05D016586 ORTHO05D400521 2.4e-96 356.3 209 93.3
SGA_v2.0_scaffold52G19086 Striga asiatica HOM05D016586 ORTHO05D404120 2.3e-38 163.7 212 55.7
SGA_v2.0_scaffold52G19093 Striga asiatica HOM05D016586 ORTHO05D403038 2.3e-38 163.7 212 55.7
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 2.8e-28 130.2 70 91.4
SGA_v2.0_scaffold52G19088 Striga asiatica HOM05D016586 ORTHO05D406419 2.8e-28 130.2 251 43.4
SGA_v2.0_scaffold52G19084 Striga asiatica HOM05D016586 ORTHO05D400185 6.1e-28 129.0 231 45.5
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 6.1e-28 129.0 70 90.0
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 3.1e-27 126.7 70 90.0
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 2.4e-16 90.5 81 55.6
SGA_v2.0_scaffold20G09189 Striga asiatica HOM05D016586 ORTHO05D004968 6.0e-15 85.9 59 79.7
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 1.7e-14 84.3 70 55.7
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 3.9e-14 83.2 62 64.5
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 4.3e-13 79.7 61 57.4
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 7.3e-13 79.0 63 55.6
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 9.5e-13 78.6 64 57.8
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 9.5e-13 78.6 64 57.8
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 1.2e-12 78.2 63 55.6
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 1.2e-12 78.2 70 57.1
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 1.6e-12 77.8 74 48.6
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 1.6e-12 77.8 69 53.6
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 2.8e-12 77.0 75 48.0
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 3.6e-12 76.6 64 57.8
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 4.7e-12 76.3 64 57.8
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 4.7e-12 76.3 62 59.7
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 6.2e-12 75.9 74 51.4
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 8.1e-12 75.5 74 50.0
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 8.1e-12 75.5 74 50.0
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.4e-11 74.7 74 50.0
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 1.4e-11 74.7 68 47.1
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 1.8e-11 74.3 70 48.6
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 1.8e-11 74.3 75 48.0
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 2.3e-11 73.9 71 53.5
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 2.3e-11 73.9 68 47.1
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 2.3e-11 73.9 64 54.7
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 3.1e-11 73.6 74 47.3
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 3.1e-11 73.6 74 48.6
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 3.1e-11 73.6 65 50.8
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 5.2e-11 72.8 72 41.7
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 5.2e-11 72.8 66 50.0
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 5.2e-11 72.8 74 48.6
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 8.9e-11 72.0 70 47.1
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 1.2e-10 71.6 118 37.3
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 1.2e-10 71.6 64 51.6
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 1.5e-10 71.2 68 50.0
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 2.0e-10 70.9 74 50.0
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 2.0e-10 70.9 66 48.5
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 2.6e-10 70.5 74 47.3
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 2.6e-10 70.5 64 48.4
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 2.6e-10 70.5 67 49.3
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 3.4e-10 70.1 70 44.3
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 3.4e-10 70.1 65 50.8
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 3.4e-10 70.1 59 55.9
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 5.8e-10 69.3 62 53.2
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 9.9e-10 68.6 63 49.2
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 9.9e-10 68.6 63 49.2
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 1.3e-09 68.2 70 44.3
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 1.3e-09 68.2 71 47.9
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 1.3e-09 68.2 67 52.2
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 1.3e-09 68.2 86 39.5
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 1.3e-09 68.2 60 53.3
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 1.7e-09 67.8 86 39.5
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 2.2e-09 67.4 63 46.0
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 2.9e-09 67.0 67 47.8
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 3.7e-09 66.6 70 42.9
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 3.7e-09 66.6 70 42.9
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 6.4e-09 65.9 74 43.2
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 8.3e-09 65.5 70 45.7
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 8.3e-09 65.5 72 48.6
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 8.3e-09 65.5 62 51.6
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 1.1e-08 65.1 64 48.4
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 1.4e-08 64.7 91 38.5
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.9e-08 64.3 67 44.8
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.9e-08 64.3 73 45.2
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 1.9e-08 64.3 71 45.1
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 4.1e-08 63.2 66 47.0
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 4.1e-08 63.2 110 35.5
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 4.1e-08 63.2 81 39.5
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 4.1e-08 63.2 67 47.8
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 4.1e-08 63.2 109 34.9
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 5.4e-08 62.8 76 42.1
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 7.1e-08 62.4 63 49.2
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 9.2e-08 62.0 70 40.0
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 1.2e-07 61.6 111 35.1
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.6e-07 61.2 73 43.8
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 2.1e-07 60.8 64 46.9
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 3.5e-07 60.1 111 34.2
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 6.0e-07 59.3 51 49.0
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 6.0e-07 59.3 73 43.8
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 6.0e-07 59.3 73 43.8
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 7.8e-07 58.9 63 44.4
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 1.3e-06 58.2 58 51.7
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 2.3e-06 57.4 61 37.7
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 3.9e-06 56.6 64 45.3
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 6.6e-06 55.8 53 45.3
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 8.6e-06 55.5 73 41.1


User provided reference genes

Program Settings