Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19008 Striga asiatica HOM05D004492 ORTHO05D005602 1.2e-280 969.1 482 100.0
MSTRG.25402 Avicennia marina HOM05D004492 ORTHO05D005602 2.5e-185 652.5 511 65.9
Migut.C01175 Erythranthe guttata HOM05D004492 ORTHO05D005602 1.4e-180 636.7 482 68.5
SalBow7G1607 Salvia bowleyana HOM05D004492 ORTHO05D005602 3.2e-180 635.6 495 66.3
Oeu047923.1 Olea europaea HOM05D004492 ORTHO05D005602 2.3e-175 619.4 499 63.7
Nitab4.5_0000633g0160 Nicotiana tabacum HOM05D004492 ORTHO05D005602 1.8e-167 593.2 487 61.2
Manes.18G073743 Manihot esculenta HOM05D004492 ORTHO05D005602 5.8e-166 588.2 489 61.3
PGSC0003DMG400017559 Solanum tuberosum HOM05D004492 ORTHO05D005602 2.7e-163 579.3 488 60.2
GSVIVG01008928001 Vitis vinifera HOM05D004492 ORTHO05D005602 3.5e-163 578.9 486 61.1
Cpa.g.sc36.10 Carica papaya HOM05D004492 ORTHO05D005602 3.0e-162 575.9 488 59.8
HanXRQChr05g0149221 Helianthus annuus HOM05D004492 ORTHO05D005602 3.9e-162 575.5 490 60.0
Nitab4.5_0004882g0030 Nicotiana tabacum HOM05D004492 ORTHO05D005602 6.6e-162 574.7 484 60.1
CAN.G1396.8 Capsicum annuum HOM05D004492 ORTHO05D005602 8.7e-162 574.3 490 59.6
Gorai.005G091200 Gossypium raimondii HOM05D004492 ORTHO05D005602 1.9e-161 573.2 496 59.1
arahy.Tifrunner.gnm1.ann1.Y35QAD Arachis hypogaea HOM05D004492 ORTHO05D005602 1.6e-160 570.1 453 62.9
Sopen06g020530 Solanum pennellii HOM05D004492 ORTHO05D005602 1.6e-160 570.1 492 58.9
Atru.chr13.1338 Acer truncatum HOM05D004492 ORTHO05D005602 1.4e-159 567.0 492 59.6
Atru.chr13.1381 Acer truncatum HOM05D004492 ORTHO05D005602 1.4e-159 567.0 492 59.6
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 9.0e-159 564.3 491 58.5
Sc23g0000850 Simmondsia chinensis HOM05D004492 ORTHO05D005602 3.4e-158 562.4 488 59.2
Actinidia29442 Actinidia chinensis HOM05D004492 ORTHO05D005602 5.8e-158 561.6 484 59.1
Solyc06g060390.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 7.6e-158 561.2 487 58.9
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 2.2e-157 559.7 486 59.5
CiPaw.06G026300 Carya illinoinensis HOM05D004492 ORTHO05D005602 8.4e-157 557.8 488 58.0
DCAR_002659 Daucus carota HOM05D004492 ORTHO05D005602 8.4e-157 557.8 483 59.2
Gohir.D02G081500 Gossypium hirsutum HOM05D004492 ORTHO05D005602 1.1e-156 557.4 488 58.6
Prupe.1G503800 Prunus persica HOM05D004492 ORTHO05D005602 2.4e-156 556.2 486 58.8
TWI12G1231 Tripterygium wilfordii HOM05D004492 ORTHO05D005602 3.2e-156 555.8 485 59.2
THA.LOC104813139 Tarenaya hassleriana HOM05D004492 ORTHO05D005602 4.2e-156 555.4 486 57.8
PSO170G3797 Papaver somniferum HOM05D004492 ORTHO05D005602 9.3e-156 554.3 482 58.7
Potri.005G173100 Populus trichocarpa HOM05D004492 ORTHO05D005602 9.3e-156 554.3 484 57.6
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 1.2e-155 553.9 480 59.8
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 1.3e-154 550.4 488 57.8
TAR625G1407 Trochodendron aralioides HOM05D004492 ORTHO05D005602 1.3e-154 550.4 488 58.2
Migut.C01177 Erythranthe guttata HOM05D004492 ORTHO05D005602 2.3e-154 549.7 485 58.8
Lsat_1_v5_gn_6_109160 Lactuca sativa HOM05D004492 ORTHO05D005602 3.9e-154 548.9 492 58.9
MD15G1356600 Malus domestica HOM05D004492 ORTHO05D005602 6.6e-154 548.1 486 59.1
Sed0009263 Sechium edule HOM05D004492 ORTHO05D005602 1.1e-153 547.4 485 58.8
Duzib093G1652 Durio zibethinus HOM05D004492 ORTHO05D005602 1.5e-153 547.0 487 57.3
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 3.3e-153 545.8 486 57.4
ECA246G3183 Erigeron canadensis HOM05D004492 ORTHO05D005602 5.6e-153 545.0 488 59.0
Thecc.08G118700 Theobroma cacao HOM05D004492 ORTHO05D005602 9.6e-153 544.3 487 57.1
arahy.Tifrunner.gnm1.ann1.WF7TJ5 Arachis hypogaea HOM05D004492 ORTHO05D005602 1.6e-152 543.5 505 56.2
Ah.05g172340 Amaranthus hybridus HOM05D004492 ORTHO05D005602 3.1e-151 539.3 481 57.2
Dinv27371 Davidia involucrata HOM05D004492 ORTHO05D005602 7.6e-150 534.6 436 62.6
Aqoxy5G02431 Aquilegia oxysepala HOM05D004492 ORTHO05D005602 3.8e-149 532.3 487 55.9
Lalb_Chr08g0241631 Lupinus albus HOM05D004492 ORTHO05D005602 6.4e-149 531.6 489 56.9
Aa31LG9G14390 Aethionema arabicum HOM05D004492 ORTHO05D005602 1.9e-148 530.0 488 55.5
AUR62030552 Chenopodium quinoa HOM05D004492 ORTHO05D005602 2.4e-148 529.6 504 54.2
Ciclev10001105m.g Citrus clementina HOM05D004492 ORTHO05D005602 3.2e-148 529.3 453 59.4
Lj1g0007587 Lotus japonicus HOM05D004492 ORTHO05D005602 3.2e-148 529.3 486 56.6
MELO3C003048.2 Cucumis melo HOM05D004492 ORTHO05D005602 4.2e-148 528.9 503 55.1
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 6.0e-147 525.0 583 51.3
EL10Ac1g00021 Beta vulgaris HOM05D004492 ORTHO05D005602 7.9e-147 524.6 488 56.1
ClCG03G009360 Citrullus lanatus HOM05D004492 ORTHO05D005602 7.9e-147 524.6 520 53.5
Medtr3g073000 Medicago truncatula HOM05D004492 ORTHO05D005602 6.7e-146 521.5 480 56.0
TPR.G22341 Trifolium pratense HOM05D004492 ORTHO05D005602 1.1e-145 520.8 488 54.9
unitig_46.g18495 Utricularia gibba HOM05D004492 ORTHO05D005602 7.4e-145 518.1 512 53.7
Psat5g133640 Pisum sativum HOM05D004492 ORTHO05D005602 2.8e-144 516.2 487 55.0
Cfa015974 Carpinus fangiana HOM05D004492 ORTHO05D005602 3.7e-144 515.8 479 55.9
COL.COLO4_38233 Corchorus olitorius HOM05D004492 ORTHO05D005602 3.7e-144 515.8 486 54.5
RcHm_v2.0_Chr6g0294891 Rosa chinensis HOM05D004492 ORTHO05D005602 6.2e-144 515.0 482 55.8
Carub.0003s3205 Capsella rubella HOM05D004492 ORTHO05D005602 1.4e-143 513.8 485 54.6
AT2G17900 Arabidopsis thaliana HOM05D004492 ORTHO05D005602 3.1e-143 512.7 480 54.8
Sp3g31340 Schrenkiella parvula HOM05D004492 ORTHO05D005602 3.1e-143 512.7 482 54.8
A07p03030 Brassica napus HOM05D004492 ORTHO05D005602 4.0e-143 512.3 486 54.3
Phvul.009G121500 Phaseolus vulgaris HOM05D004492 ORTHO05D005602 6.9e-143 511.5 489 53.8
AL3G50940 Arabidopsis lyrata HOM05D004492 ORTHO05D005602 9.0e-143 511.1 481 54.5
BraA07t28100Z Brassica rapa HOM05D004492 ORTHO05D005602 9.0e-143 511.1 488 54.3
BcaC06g36340 Brassica carinata HOM05D004492 ORTHO05D005602 3.8e-141 505.8 486 53.7
Thhalv10022664m.g Eutrema salsugineum HOM05D004492 ORTHO05D005602 1.1e-140 504.2 488 53.3
C07p05160 Brassica napus HOM05D004492 ORTHO05D005602 2.5e-140 503.1 487 53.4
BolC7t40914H Brassica oleracea HOM05D004492 ORTHO05D005602 2.5e-140 503.1 487 53.4
Sabra05G0130600 Salix brachista HOM05D004492 ORTHO05D005602 1.2e-139 500.7 564 48.4
FvH4_2g26280 Fragaria vesca HOM05D004492 ORTHO05D005602 2.7e-139 499.6 481 53.8
FAN24G0496 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.7e-139 499.6 482 53.5
VMungo1309G2182 Vigna mungo HOM05D004492 ORTHO05D005602 1.0e-138 497.7 521 51.2
BcaB03g16570 Brassica carinata HOM05D004492 ORTHO05D005602 2.3e-138 496.5 488 53.9
Peaxi162Scf00051g00731 Petunia axillaris HOM05D004492 ORTHO05D005602 1.9e-137 493.4 483 54.2
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 1.3e-136 490.7 536 50.0
SalBow7G0677 Salvia bowleyana HOM05D004492 ORTHO05D005602 1.1e-129 467.6 370 64.9
Glyma.04G252800 Glycine max HOM05D004492 ORTHO05D005602 5.7e-129 465.3 487 51.1
ATR0684G004 Amborella trichopoda HOM05D004492 ORTHO05D005602 1.4e-124 450.7 481 49.3
AUR62004708 Chenopodium quinoa HOM05D004492 ORTHO05D005602 4.2e-124 449.1 480 51.2
RcHm_v2.0_Chr6g0294881 Rosa chinensis HOM05D004492 ORTHO05D005602 8.8e-122 441.4 483 49.9
HPP92_009359 Vanilla planifolia HOM05D004492 ORTHO05D005602 1.7e-120 437.2 485 48.5
CSS0028158 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 5.3e-119 432.2 374 60.4
CSS0038302 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 5.3e-119 432.2 374 60.4
CANSAT11G0049 Cannabis sativa HOM05D004492 ORTHO05D005602 1.5e-113 414.1 388 56.2
Hma1.2p1_0038F.1_g023990 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 2.4e-111 406.8 293 68.6
Ca_15216_v3 Cicer arietinum L. HOM05D004492 ORTHO05D005602 4.7e-107 392.5 377 55.4
Gohir.A02G074300 Gossypium hirsutum HOM05D004492 ORTHO05D005602 1.5e-105 387.5 367 54.8
Zm00001eb216690 Zea mays HOM05D004492 ORTHO05D005602 6.5e-101 372.1 407 49.4
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 2.3e-98 363.6 484 43.2
Migut.C01176 Erythranthe guttata HOM05D004492 ORTHO05D005602 3.8e-93 346.3 389 50.1
Pp3c19_7630 Physcomitrium patens HOM05D004492 ORTHO05D005602 1.2e-91 341.3 482 38.2
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 1.4e-90 337.8 485 37.7
FAN15G1155 Fragaria x ananassa HOM05D004492 ORTHO05D005602 5.0e-85 319.3 497 40.8
FAN24G3351 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.5e-84 317.0 466 40.1
COL.COLO4_38232 Corchorus olitorius HOM05D004492 ORTHO05D005602 2.8e-83 313.5 454 38.1
Hund27046 Selenicereus undatus HOM05D004492 ORTHO05D005602 3.6e-83 313.2 487 40.7
CDE11G0913 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 1.0e-77 295.0 293 52.2
SMO116G0295 Selaginella moellendorffii HOM05D004492 ORTHO05D005602 5.0e-77 292.7 482 36.1
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 2.5e-76 290.4 475 36.2
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 4.3e-76 289.7 470 37.4
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 5.6e-76 289.3 479 36.7
Hma1.2p1_0038F.1_g023980 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 9.5e-76 288.5 258 59.7
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 2.8e-75 287.0 483 35.6
Thecc.08G119200 Theobroma cacao HOM05D004492 ORTHO05D005602 5.2e-74 282.7 468 35.9
COL.COLO4_38230 Corchorus olitorius HOM05D004492 ORTHO05D005602 2.9e-72 276.9 437 38.9
CARHR108400 Cardamine hirsuta HOM05D004492 ORTHO05D005602 1.1e-71 275.0 247 53.8
Cc10_g10520 Coffea canephora HOM05D004492 ORTHO05D005602 1.6e-70 271.2 206 66.0
AUR62023625 Chenopodium quinoa HOM05D004492 ORTHO05D005602 5.4e-55 219.5 465 36.3
FAN27G1826 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.8e-50 204.5 330 39.1
CBR_g16883 Chara braunii HOM05D004492 ORTHO05D001303 8.9e-50 202.2 581 26.2
Lj7C323T6 Lonicera japonica HOM05D004492 ORTHO05D005602 1.5e-49 201.4 198 56.1
Glyma.06G109733 Glycine max HOM05D004492 ORTHO05D005602 3.2e-47 193.7 167 58.1
SHI09394 Sapria himalayana HOM05D004492 ORTHO05D000001 3.2e-47 193.7 273 42.1
Cc10_g10540 Coffea canephora HOM05D004492 ORTHO05D005602 2.5e-44 184.1 131 65.6
Zm00001eb393760 Zea mays HOM05D004492 ORTHO05D005602 4.3e-44 183.3 214 47.7
FvH4_2g26270 Fragaria vesca HOM05D004492 ORTHO05D005602 7.6e-41 172.6 246 41.1
Glyma.06G109667 Glycine max HOM05D004492 ORTHO05D005602 2.3e-37 161.0 134 63.4
FvH4_2g03781 Fragaria vesca HOM05D004492 ORTHO05D005602 2.4e-34 151.0 184 40.8
Cc10_g10530 Coffea canephora HOM05D004492 ORTHO05D005602 1.5e-33 148.3 84 81.0
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 2.6e-33 147.5 98 73.5
Lj7A312G16 Lonicera japonica HOM05D004492 ORTHO05D005602 3.4e-33 147.1 148 54.1
FAN15G0234 Fragaria x ananassa HOM05D004492 ORTHO05D005602 6.4e-32 142.9 290 32.1
FvH4_2g03790 Fragaria vesca HOM05D000030 ORTHO05D000009 2.7e-30 137.5 169 45.6
SEGI_04710 Sequoiadendron giganteum HOM05D004492 ORTHO05D005602 3.9e-29 133.7 96 64.6
Os03g0704200 Oryza sativa ssp. japonica HOM05D004492 ORTHO05D005602 1.9e-28 131.3 128 47.7
FvH4_2g26271 Fragaria vesca HOM05D004492 ORTHO05D005602 7.1e-23 112.8 142 41.5
PRCOL_00002940 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 6.9e-18 96.3 241 30.3
Solyc08g016560.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 6.9e-18 96.3 70 62.9
Solyc05g040060.1 Solanum lycopersicum HOM05D004492 ORTHO05D005602 3.4e-17 94.0 70 62.9
Thecc.08G118800 Theobroma cacao HOM05D004492 ORTHO05D005602 5.0e-16 90.1 91 46.2
Solyc01g034050.1 Solanum lycopersicum HOM05D004492 ORTHO05D005602 8.4e-16 89.4 70 61.4
SHI09395 Sapria himalayana HOM05D004492 ORTHO05D000001 5.5e-15 86.7 113 40.7
MCO04G092 Micromonas commoda HOM05D004492 ORTHO05D005602 1.3e-13 82.0 348 25.6
SEGI_10642 Sequoiadendron giganteum HOM05D004492 ORTHO05D005602 1.8e-13 81.6 110 38.2
Cre01.g016450 Chlamydomonas reinhardtii HOM05D004492 ORTHO05D005602 1.1e-12 79.0 324 25.0
FAN15G1996 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.8e-10 71.6 47 66.0
Zm00001eb002880 Zea mays HOM05D004492 ORTHO05D005602 2.0e-09 68.2 75 44.0
MCO11G526 Micromonas commoda HOM05D004492 ORTHO05D005602 2.6e-09 67.8 66 39.4
Pp3c11_23530 Physcomitrium patens HOM05D004492 ORTHO05D030137 7.7e-09 66.2 316 24.4
RcHm_v2.0_Chr2g0164551 Rosa chinensis HOM05D004492 ORTHO05D005602 8.5e-08 62.8 46 67.4
CDE05G1456 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 1.9e-07 61.6 61 49.2
MCO14G460 Micromonas commoda HOM05D004492 ORTHO05D005602 3.2e-07 60.8 89 36.0
Lj7A323T18 Lonicera japonica HOM05D004492 ORTHO05D005602 5.5e-07 60.1 46 56.5
HPP92_003450 Vanilla planifolia HOM05D006673 ORTHO05D008458 1.6e-06 58.5 274 25.2
Psat2g141600 Pisum sativum HOM05D006673 ORTHO05D008458 3.6e-06 57.4 286 22.4
Zm00001eb413710 Zea mays HOM05D006673 ORTHO05D008458 3.6e-06 57.4 283 24.7
Psat2g141640 Pisum sativum HOM05D006673 ORTHO05D008458 4.6e-06 57.0 233 26.6
SMO367G0641 Selaginella moellendorffii HOM05D004492 ORTHO05D030137 4.6e-06 57.0 270 22.2
THA.LOC104820538 Tarenaya hassleriana HOM05D006673 ORTHO05D008458 6.1e-06 56.6 285 22.8


User provided reference genes

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