Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18991 Striga asiatica HOM05D002433 ORTHO05D019117 2.0e-129 465.7 226 100.0
SGA_v2.0_scaffold59G20745 Striga asiatica HOM05D002433 ORTHO05D019117 4.3e-39 165.6 91 91.2
SGA_v2.0_scaffold60G20923 Striga asiatica HOM05D002433 ORTHO05D019117 5.7e-31 138.7 76 88.2
SGA_v2.0_scaffold12G06067 Striga asiatica HOM05D002433 ORTHO05D019117 3.7e-30 136.0 73 90.4
SGA_v2.0_scaffold59G20627 Striga asiatica HOM05D002433 ORTHO05D019117 1.2e-28 131.0 76 85.5
SGA_v2.0_scaffold122G33349 Striga asiatica HOM05D002433 ORTHO05D003234 9.4e-18 94.7 61 77.0
Cc04_g01530 Coffea canephora HOM05D002433 ORTHO05D003234 3.4e-15 86.3 64 62.5
SGA_v2.0_scaffold71G23836 Striga asiatica HOM05D002433 ORTHO05D003234 2.8e-14 83.2 65 72.3
MSTRG.10967 Avicennia marina HOM05D002433 ORTHO05D003234 4.8e-14 82.4 66 63.6
SGA_v2.0_scaffold62G21420 Striga asiatica HOM05D000133 ORTHO05D006262 6.3e-14 82.0 81 60.5
Oeu058714.2 Olea europaea HOM05D002433 ORTHO05D003234 1.1e-13 81.3 70 62.9
MSTRG.22558 Avicennia marina HOM05D002433 ORTHO05D003234 2.4e-13 80.1 66 60.6
Oeu007570.1 Olea europaea HOM05D002433 ORTHO05D003234 2.4e-13 80.1 70 61.4
SGA_v2.0_scaffold51G18654 Striga asiatica HOM05D002433 ORTHO05D019117 1.2e-12 77.8 51 72.5
Migut.I01056 Erythranthe guttata HOM05D002433 ORTHO05D003234 2.0e-12 77.0 66 65.2
Nn8g38753 Nelumbo nucifera HOM05D002433 ORTHO05D003234 2.0e-12 77.0 73 56.2
Dinv37886 Davidia involucrata HOM05D002433 ORTHO05D003234 3.5e-12 76.3 69 60.9
Nn6g35561 Nelumbo nucifera HOM05D002433 ORTHO05D003234 5.9e-12 75.5 70 57.1
TAR623G0996 Trochodendron aralioides HOM05D002433 ORTHO05D003234 1.0e-11 74.7 69 56.5
TAR636G1280 Trochodendron aralioides HOM05D002433 ORTHO05D003234 1.0e-11 74.7 69 56.5
Dinv30368 Davidia involucrata HOM05D002433 ORTHO05D003234 1.3e-11 74.3 73 56.2
VMungo1080G1021 Vigna mungo HOM05D002433 ORTHO05D003234 1.3e-11 74.3 73 58.9
Oeu047968.1 Olea europaea HOM05D002433 ORTHO05D019117 2.2e-11 73.6 68 54.4
Nitab4.5_0002795g0060 Nicotiana tabacum HOM05D002433 ORTHO05D003234 2.9e-11 73.2 65 53.8
Nitab4.5_0011681g0010 Nicotiana tabacum HOM05D002433 ORTHO05D003234 2.9e-11 73.2 65 53.8
Aqoxy7G01127 Aquilegia oxysepala HOM05D002433 ORTHO05D003234 3.8e-11 72.8 61 62.3
Actinidia21783 Actinidia chinensis HOM05D002433 ORTHO05D016425 5.0e-11 72.4 69 60.9
Peaxi162Scf00038g01712 Petunia axillaris HOM05D002433 ORTHO05D003234 6.5e-11 72.0 66 54.5
CSS0024216 Camellia sinensis var. sinensis HOM05D002433 ORTHO05D003234 8.5e-11 71.6 48 66.7
Actinidia32170 Actinidia chinensis HOM05D002433 ORTHO05D003234 1.1e-10 71.2 69 59.4
ECA246G2497 Erigeron canadensis HOM05D002433 ORTHO05D003234 1.5e-10 70.9 65 56.9
Hma1.2p1_0169F.1_g074780 Hydrangea macrophylla HOM05D002433 ORTHO05D003234 1.5e-10 70.9 66 56.1
Hma1.2p1_0291F.1_g115320 Hydrangea macrophylla HOM05D002433 ORTHO05D003234 1.5e-10 70.9 51 68.6
Lalb_Chr14g0372641 Lupinus albus HOM05D002433 ORTHO05D003234 2.5e-10 70.1 51 66.7
CSS0008835 Camellia sinensis var. sinensis HOM05D002433 ORTHO05D003234 3.2e-10 69.7 69 56.5
TAR624G0265 Trochodendron aralioides HOM05D002433 ORTHO05D003234 3.2e-10 69.7 69 56.5
Cpa.g.sc25.90 Carica papaya HOM05D002433 ORTHO05D003234 5.5e-10 68.9 50 70.0
Solyc03g121910.1 Solanum lycopersicum HOM05D002433 ORTHO05D003234 5.5e-10 68.9 62 56.5
Sopen03g040730 Solanum pennellii HOM05D002433 ORTHO05D003234 5.5e-10 68.9 62 56.5
PGSC0003DMG400002486 Solanum tuberosum HOM05D002433 ORTHO05D003234 7.2e-10 68.6 62 56.5
EL10Ac7g17640 Beta vulgaris HOM05D002433 ORTHO05D003234 9.4e-10 68.2 48 70.8
CDE05G1376 Ceratophyllum demersum HOM05D002433 ORTHO05D003234 9.4e-10 68.2 77 50.6
Phvul.005G156300 Phaseolus vulgaris HOM05D002433 ORTHO05D003234 9.4e-10 68.2 55 65.5
Glyma.13G347100 Glycine max HOM05D002433 ORTHO05D003234 1.2e-09 67.8 59 64.4
Lsat_1_v5_gn_5_21680 Lactuca sativa HOM05D002433 ORTHO05D003234 2.1e-09 67.0 67 53.7
PGR102G1947 Punica granatum HOM05D002433 ORTHO05D003234 2.1e-09 67.0 53 66.0
Sed0018623 Sechium edule HOM05D002433 ORTHO05D003234 2.1e-09 67.0 50 66.0
Aa31LG4G3150 Aethionema arabicum HOM05D002433 ORTHO05D003234 3.6e-09 66.2 60 56.7
CDE05G0453 Ceratophyllum demersum HOM05D002433 ORTHO05D003234 3.6e-09 66.2 76 52.6
CAN.G862.21 Capsicum annuum HOM05D002433 ORTHO05D003234 4.7e-09 65.9 63 52.4
DCAR_007633 Daucus carota HOM05D002433 ORTHO05D003234 4.7e-09 65.9 61 57.4
Nitab4.5_0007560g0020 Nicotiana tabacum HOM05D002433 ORTHO05D003234 4.7e-09 65.9 66 51.5
Peaxi162Scf00207g01429 Petunia axillaris HOM05D002433 ORTHO05D003234 6.1e-09 65.5 66 50.0
TPR.G6603 Trifolium pratense HOM05D002433 ORTHO05D003234 6.1e-09 65.5 49 67.3
unitig_62.g23761 Utricularia gibba HOM05D002433 ORTHO05D003234 6.1e-09 65.5 57 56.1
ATR0051G050 Amborella trichopoda HOM05D002433 ORTHO05D003234 8.0e-09 65.1 60 55.0
Ca_01229_v3 Cicer arietinum L. HOM05D002433 ORTHO05D003234 1.0e-08 64.7 49 69.4
Manes.16G098600 Manihot esculenta HOM05D002433 ORTHO05D003234 1.0e-08 64.7 70 55.7
Lj9P521T29 Lonicera japonica HOM05D002433 ORTHO05D003234 1.4e-08 64.3 70 57.1
Solyc06g062840.4 Solanum lycopersicum HOM05D002433 ORTHO05D003234 1.4e-08 64.3 76 43.4
Sopen06g022300 Solanum pennellii HOM05D002433 ORTHO05D003234 1.4e-08 64.3 76 43.4
MD15G1212700 Malus domestica HOM05D002433 ORTHO05D003234 1.8e-08 63.9 50 64.0
Medtr2g099510 Medicago truncatula HOM05D002433 ORTHO05D003234 1.8e-08 63.9 47 70.2
CAN.G825.21 Capsicum annuum HOM05D002433 ORTHO05D003234 2.3e-08 63.5 48 60.4
PGSC0003DMG400004886 Solanum tuberosum HOM05D002433 ORTHO05D003234 2.3e-08 63.5 65 52.3
SGA_v2.0_scaffold24G10402 Striga asiatica HOM05D002433 ORTHO05D403451 3.0e-08 63.2 49 69.4
arahy.Tifrunner.gnm1.ann1.TTHG3F Arachis hypogaea HOM05D002433 ORTHO05D003234 4.0e-08 62.8 65 55.4
arahy.Tifrunner.gnm1.ann1.ZW77VX Arachis hypogaea HOM05D002433 ORTHO05D003234 4.0e-08 62.8 65 55.4
Glyma.15G027000 Glycine max HOM05D002433 ORTHO05D003234 4.0e-08 62.8 58 62.1
Sc02g0004340 Simmondsia chinensis HOM05D002433 ORTHO05D003234 4.0e-08 62.8 49 61.2
TWI32G1360 Tripterygium wilfordii HOM05D002433 ORTHO05D003234 4.0e-08 62.8 67 52.2
Rhsim05G0013800 Rhododendron simsii HOM05D002433 ORTHO05D003234 5.2e-08 62.4 71 46.5
AL2G32500 Arabidopsis lyrata HOM05D002433 ORTHO05D003234 6.8e-08 62.0 67 55.2
CsaV3_1G040720 Cucumis sativus L. HOM05D002433 ORTHO05D003234 8.8e-08 61.6 74 47.3
Rhsim08G0236700 Rhododendron simsii HOM05D002433 ORTHO05D003234 8.8e-08 61.6 52 63.5
COL.COLO4_18149 Corchorus olitorius HOM05D002433 ORTHO05D003234 1.2e-07 61.2 74 54.1
Haze_15998 Corylus avellana HOM05D002433 ORTHO05D003234 1.2e-07 61.2 51 66.7
Sp5g27850 Schrenkiella parvula HOM05D002433 ORTHO05D003234 1.2e-07 61.2 64 53.1
BcaC04g22857 Brassica carinata HOM05D002433 ORTHO05D003234 1.5e-07 60.8 68 51.5
BolC9t54359H Brassica oleracea HOM05D002433 ORTHO05D003234 1.5e-07 60.8 68 51.5
Gohir.D06G073200 Gossypium hirsutum HOM05D002433 ORTHO05D003234 1.5e-07 60.8 72 50.0
unitig_52.g17098 Utricularia gibba HOM05D002433 ORTHO05D003234 1.5e-07 60.8 56 55.4
Ah.15g092780 Amaranthus hybridus HOM05D002433 ORTHO05D003234 2.0e-07 60.5 41 68.3
Thhalv10018411m.g Eutrema salsugineum HOM05D002433 ORTHO05D003234 2.0e-07 60.5 77 50.6
Sed0003791 Sechium edule HOM05D002433 ORTHO05D003234 2.0e-07 60.5 83 48.2
Cfa003550 Carpinus fangiana HOM05D002433 ORTHO05D003234 2.6e-07 60.1 51 64.7
CARHR065720 Cardamine hirsuta HOM05D002433 ORTHO05D003234 3.4e-07 59.7 70 48.6
Lalb_Chr12g0199971 Lupinus albus HOM05D002433 ORTHO05D003234 3.4e-07 59.7 41 65.9
Carub.0002s1965 Capsella rubella HOM05D002433 ORTHO05D003234 4.4e-07 59.3 69 52.2
vmacro22220 Vaccinium macrocarpon HOM05D002433 ORTHO05D003234 4.4e-07 59.3 51 60.8
CiPaw.01G221400 Carya illinoinensis HOM05D002433 ORTHO05D003234 5.7e-07 58.9 69 53.6
Dinv42354 Davidia involucrata HOM05D002433 ORTHO05D003234 5.7e-07 58.9 70 48.6
CiPaw.02G137400 Carya illinoinensis HOM05D002433 ORTHO05D003234 7.5e-07 58.5 51 64.7
FAN19G0473 Fragaria x ananassa HOM05D002433 ORTHO05D003234 7.5e-07 58.5 72 52.8
Aqoxy7G00607 Aquilegia oxysepala HOM05D002433 ORTHO05D003234 9.8e-07 58.2 30 83.3
FAN18G0462 Fragaria x ananassa HOM05D002433 ORTHO05D003234 9.8e-07 58.2 64 51.6
FvH4_1g08110 Fragaria vesca HOM05D002433 ORTHO05D003234 1.3e-06 57.8 70 48.6
Thecc.09G082400 Theobroma cacao HOM05D002433 ORTHO05D003234 1.3e-06 57.8 74 51.4
C09p14550 Brassica napus HOM05D002433 ORTHO05D003234 1.7e-06 57.4 68 50.0
FAN26G1431 Fragaria x ananassa HOM05D002433 ORTHO05D003234 1.7e-06 57.4 72 54.2
Gohir.A06G074501 Gossypium hirsutum HOM05D002433 ORTHO05D003234 2.2e-06 57.0 72 48.6
Gorai.010G085500 Gossypium raimondii HOM05D002433 ORTHO05D003234 2.2e-06 57.0 72 50.0
BcaC03g15421 Brassica carinata HOM05D002433 ORTHO05D003234 2.8e-06 56.6 53 56.6
A02p18290 Brassica napus HOM05D002433 ORTHO05D003234 2.8e-06 56.6 53 56.6
C02p30320 Brassica napus HOM05D002433 ORTHO05D003234 2.8e-06 56.6 53 56.6
BolC2t09082H Brassica oleracea HOM05D002433 ORTHO05D003234 2.8e-06 56.6 53 56.6
BraA02t06868Z Brassica rapa HOM05D002433 ORTHO05D003234 2.8e-06 56.6 53 56.6
CARHR237740 Cardamine hirsuta HOM05D002433 ORTHO05D003234 2.8e-06 56.6 76 47.4
MELO3C016527.2 Cucumis melo HOM05D002433 ORTHO05D016425 2.8e-06 56.6 74 45.9
PSO782G3829 Papaver somniferum HOM05D002433 ORTHO05D003234 2.8e-06 56.6 44 56.8
QL05p009200 Quercus lobata HOM05D002433 ORTHO05D003234 2.8e-06 56.6 53 60.4
ClCG03G015330 Citrullus lanatus HOM05D002433 ORTHO05D003234 3.7e-06 56.2 71 45.1
FAN26G2727 Fragaria x ananassa HOM05D002433 ORTHO05D003234 3.7e-06 56.2 72 54.2
HanXRQChr12g0359681 Helianthus annuus HOM05D002433 ORTHO05D003234 3.7e-06 56.2 45 62.2
Aa31LG2G20700 Aethionema arabicum HOM05D002433 ORTHO05D003234 4.9e-06 55.8 68 51.5
AT1G72810 Arabidopsis thaliana HOM05D002433 ORTHO05D003234 4.9e-06 55.8 81 50.6
Eucgr.C00846 Eucalyptus grandis HOM05D002433 ORTHO05D003234 4.9e-06 55.8 74 45.9
Manes.11G022700 Manihot esculenta HOM05D002433 ORTHO05D003234 4.9e-06 55.8 71 45.1
QL02p061713 Quercus lobata HOM05D002433 ORTHO05D003234 4.9e-06 55.8 51 56.9
RcHm_v2.0_Chr2g0094161 Rosa chinensis HOM05D002433 ORTHO05D003234 4.9e-06 55.8 74 50.0
VMungo1215G0297 Vigna mungo HOM05D002433 ORTHO05D003234 4.9e-06 55.8 70 50.0
Gohir.A05G032400 Gossypium hirsutum HOM05D002433 ORTHO05D003234 6.3e-06 55.5 50 60.0
Gohir.D05G033800 Gossypium hirsutum HOM05D002433 ORTHO05D003234 6.3e-06 55.5 50 60.0
Gorai.009G034200 Gossypium raimondii HOM05D002433 ORTHO05D003234 6.3e-06 55.5 50 60.0
BcaB05g24778 Brassica carinata HOM05D002433 ORTHO05D003234 8.3e-06 55.1 48 58.3
CANSAT56G3231 Cannabis sativa HOM05D002433 ORTHO05D003234 8.3e-06 55.1 59 54.2
CANSAT56G3542 Cannabis sativa HOM05D002433 ORTHO05D003234 8.3e-06 55.1 59 54.2
Duzib187G0335 Durio zibethinus HOM05D002433 ORTHO05D003234 8.3e-06 55.1 69 52.2


User provided reference genes

Program Settings