Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 5.1e-168 594.3 305 100.0
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 2.4e-125 452.6 321 75.7
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 9.1e-125 450.7 313 75.7
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.5e-119 433.3 361 66.2
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 4.1e-117 425.2 321 69.2
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 4.0e-112 408.7 321 67.6
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.9e-110 402.5 318 67.9
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 2.4e-109 399.4 321 66.7
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 7.0e-109 397.9 333 64.6
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 7.8e-108 394.4 319 66.8
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 1.7e-107 393.3 321 65.7
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 3.6e-105 385.6 319 65.2
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 3.6e-105 385.6 305 69.5
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 1.0e-104 384.0 329 65.0
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.4e-104 383.6 323 64.7
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 4.0e-104 382.1 320 65.6
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.2e-104 381.7 323 64.7
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.4e-103 379.0 321 64.8
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 7.5e-103 377.9 323 63.8
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.1e-101 374.0 320 64.1
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 2.4e-101 372.9 322 61.8
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 9.2e-101 370.9 322 64.3
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 3.5e-100 369.0 321 64.8
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 4.6e-100 368.6 325 63.4
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 7.8e-100 367.9 334 61.1
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 7.8e-100 367.9 322 60.6
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 1.3e-99 367.1 321 61.7
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 1.3e-99 367.1 324 63.3
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.7e-99 366.7 324 63.3
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 1.7e-99 366.7 324 63.0
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 3.0e-99 365.9 324 63.6
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 8.6e-99 364.4 323 63.2
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 8.6e-99 364.4 324 63.0
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.1e-98 364.0 324 63.6
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 3.3e-98 362.5 323 62.2
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 4.3e-98 362.1 314 62.1
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 5.6e-98 361.7 317 61.5
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.2e-97 360.5 322 63.4
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 3.6e-97 359.0 314 62.4
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 4.7e-97 358.6 318 62.9
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 6.2e-97 358.2 322 60.6
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 8.1e-97 357.8 321 62.3
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.1e-96 357.5 329 59.6
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.4e-96 357.1 311 63.7
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.4e-96 357.1 321 62.6
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 4.0e-96 355.5 321 61.4
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 8.9e-96 354.4 311 63.0
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 4.4e-95 352.1 319 58.9
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 4.4e-95 352.1 322 59.9
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 5.8e-95 351.7 323 59.8
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 1.7e-94 350.1 282 67.0
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.2e-94 349.7 317 60.3
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 3.7e-94 349.0 308 62.3
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 8.3e-94 347.8 319 60.8
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.3e-94 347.8 319 60.8
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.4e-93 347.1 303 63.0
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 2.4e-93 346.3 322 59.0
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 3.2e-93 345.9 319 60.5
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 7.1e-93 344.7 321 59.5
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 7.1e-93 344.7 319 59.9
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 1.6e-92 343.6 325 61.8
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 2.1e-92 343.2 311 60.5
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 3.5e-92 342.4 343 57.1
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 7.8e-92 341.3 314 58.9
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.0e-91 340.9 319 60.2
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 1.3e-91 340.5 255 69.8
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 6.6e-91 338.2 325 58.5
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 2.1e-89 333.2 314 58.0
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 3.6e-89 332.4 321 57.0
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 4.7e-89 332.0 317 57.4
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 6.2e-89 331.6 266 67.7
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 1.4e-88 330.5 311 57.6
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.8e-88 330.1 373 53.4
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 3.1e-88 329.3 379 51.5
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 4.0e-88 328.9 313 57.2
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 4.0e-88 328.9 313 57.2
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 6.8e-88 328.2 325 55.4
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 8.9e-88 327.8 316 56.6
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.2e-87 327.4 319 58.3
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 2.0e-87 326.6 313 57.2
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 3.4e-87 325.9 316 56.6
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 4.4e-87 325.5 294 59.9
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 4.4e-87 325.5 316 56.6
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 1.3e-86 323.9 313 58.8
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.3e-86 323.9 313 56.9
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.7e-86 323.6 313 55.3
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 2.2e-86 323.2 372 52.4
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 2.9e-86 322.8 311 56.6
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 6.4e-86 321.6 313 56.2
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 1.1e-85 320.9 286 59.8
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.1e-85 320.9 311 56.6
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.4e-85 320.5 311 56.3
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.9e-85 320.1 311 55.9
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.9e-85 320.1 311 55.9
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.9e-85 320.1 311 55.9
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.4e-85 319.7 342 54.1
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 7.1e-85 318.2 267 63.3
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 4.6e-84 315.5 312 55.1
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 4.6e-84 315.5 313 55.9
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 4.6e-84 315.5 313 55.9
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 1.3e-83 313.9 310 55.5
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 8.6e-83 311.2 314 54.8
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 1.5e-82 310.5 314 54.8
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 2.1e-81 306.6 316 52.2
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.2e-79 300.8 309 56.3
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.9e-77 293.5 301 56.8
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.3e-75 287.3 207 72.0
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 2.4e-72 276.6 290 54.5
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.2e-69 266.2 293 53.9
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.2e-69 265.8 344 51.5
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 3.8e-62 242.7 323 47.4
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.9e-61 240.4 309 48.2
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 5.6e-58 228.8 268 49.3
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 1.1e-56 224.6 311 45.3
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 4.0e-56 222.6 304 44.4
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 2.0e-55 220.3 325 45.5
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 9.7e-50 201.4 320 40.6
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 3.6e-44 183.0 179 59.8
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 4.6e-44 182.6 110 84.5
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 3.0e-43 179.9 209 44.5
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 3.4e-39 166.4 180 47.2
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.9e-37 160.6 105 75.2
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 6.1e-36 155.6 110 70.9
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 8.2e-33 145.2 136 58.8
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 7.7e-31 138.7 267 37.8
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 1.7e-25 120.9 236 37.3
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 2.4e-24 117.1 181 44.2
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 5.2e-19 99.4 95 56.8
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.8e-16 90.9 103 52.4
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 3.8e-14 83.2 46 89.1
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 3.8e-14 83.2 46 89.1
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 3.8e-14 83.2 46 89.1
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 3.8e-14 83.2 70 62.9
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 1.9e-13 80.9 54 72.2
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 4.2e-13 79.7 106 45.3
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 7.2e-13 79.0 45 86.7
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 1.2e-12 78.2 53 73.6
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.6e-12 77.8 81 54.3
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 3.0e-11 73.6 53 66.0
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 8.8e-11 72.0 106 44.3
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 7.0e-08 62.4 36 77.8
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 9.1e-08 62.0 51 66.7


User provided reference genes

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