Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 5.3e-57 224.2 117 100.0
SGA_v2.0_scaffold52G18969 Striga asiatica HOM05D007246 ORTHO05D009066 2.8e-29 132.1 115 67.0
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 3.0e-28 128.6 115 58.3
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 4.3e-22 108.2 91 62.6
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 2.8e-21 105.5 112 52.7
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 1.8e-20 102.8 122 48.4
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 3.2e-17 92.0 115 47.0
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 2.1e-16 89.4 109 46.8
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 2.7e-16 89.0 109 49.5
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 1.3e-15 86.7 115 43.5
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 3.0e-15 85.5 105 46.7
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 6.6e-15 84.3 114 44.7
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 6.6e-15 84.3 93 49.5
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 1.1e-14 83.6 110 43.6
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 1.5e-14 83.2 117 43.6
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 1.5e-14 83.2 91 47.3
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 1.9e-14 82.8 112 42.9
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 1.9e-14 82.8 114 43.9
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 3.3e-14 82.0 117 43.6
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 7.3e-14 80.9 111 43.2
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 7.3e-14 80.9 114 41.2
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 1.2e-13 80.1 112 42.9
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 1.2e-13 80.1 109 45.9
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 1.6e-13 79.7 109 42.2
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 2.1e-13 79.3 109 42.2
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 2.8e-13 79.0 110 43.6
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 3.6e-13 78.6 94 46.8
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 3.6e-13 78.6 112 42.0
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 6.2e-13 77.8 110 40.0
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 6.2e-13 77.8 115 42.6
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 8.1e-13 77.4 114 42.1
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 8.1e-13 77.4 114 42.1
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 8.1e-13 77.4 113 39.8
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 8.1e-13 77.4 95 45.3
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 1.1e-12 77.0 114 40.4
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 1.1e-12 77.0 115 39.1
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 1.1e-12 77.0 93 45.2
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 1.4e-12 76.6 100 47.0
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 1.4e-12 76.6 115 36.5
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 1.8e-12 76.3 100 41.0
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 1.8e-12 76.3 100 42.0
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 1.8e-12 76.3 113 41.6
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 1.8e-12 76.3 117 38.5
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 1.8e-12 76.3 115 39.1
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 2.3e-12 75.9 117 40.2
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 2.3e-12 75.9 113 40.7
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 2.3e-12 75.9 110 40.0
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 3.1e-12 75.5 114 40.4
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 3.1e-12 75.5 114 40.4
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 4.0e-12 75.1 117 41.0
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 4.0e-12 75.1 92 42.4
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 4.0e-12 75.1 84 45.2
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 4.0e-12 75.1 115 35.7
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 6.8e-12 74.3 117 43.6
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 6.8e-12 74.3 110 40.0
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 1.2e-11 73.6 114 40.4
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 1.2e-11 73.6 110 40.0
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 1.5e-11 73.2 97 44.3
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 2.0e-11 72.8 115 36.5
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 2.6e-11 72.4 89 44.9
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 2.6e-11 72.4 100 39.0
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 4.4e-11 71.6 111 41.4
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 5.8e-11 71.2 106 39.6
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 5.8e-11 71.2 115 39.1
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 5.8e-11 71.2 100 38.0
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 5.8e-11 71.2 99 37.4
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 7.5e-11 70.9 105 40.0
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 1.3e-10 70.1 116 37.1
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 1.3e-10 70.1 97 41.2
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 1.7e-10 69.7 97 40.2
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 1.7e-10 69.7 114 37.7
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 1.7e-10 69.7 111 39.6
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 2.2e-10 69.3 90 44.4
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 2.9e-10 68.9 104 37.5
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 3.7e-10 68.6 64 53.1
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 6.4e-10 67.8 101 38.6
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 6.4e-10 67.8 94 42.6
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 8.3e-10 67.4 111 37.8
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 1.9e-09 66.2 99 40.4
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 4.1e-09 65.1 115 36.5
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 4.1e-09 65.1 111 36.9
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 4.1e-09 65.1 88 39.8
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 5.4e-09 64.7 88 39.8
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 5.4e-09 64.7 89 41.6
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 9.2e-09 63.9 102 37.3
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 1.6e-08 63.2 93 39.8
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 1.6e-08 63.2 93 39.8
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.5e-08 62.0 88 39.8
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 1.3e-07 60.1 75 42.7
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 1.7e-07 59.7 101 35.6
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 1.7e-07 59.7 101 35.6
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 2.3e-07 59.3 92 37.0
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 3.9e-07 58.5 90 37.8
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 3.9e-07 58.5 75 41.3
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 3.9e-07 58.5 75 41.3
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 5.1e-07 58.2 112 36.6
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 5.1e-07 58.2 75 41.3
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 4.3e-06 55.1 75 41.3


User provided reference genes

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