Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 5.3e-113 411.0 203 100.0
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 4.9e-58 228.4 173 71.7
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.7e-50 203.4 211 56.9
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 3.0e-47 192.6 214 53.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 4.3e-46 188.7 205 54.6
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 4.3e-46 188.7 213 53.1
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.1e-41 174.1 213 49.3
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.4e-41 173.7 221 48.0
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 1.9e-41 173.3 233 45.9
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.4e-41 172.9 216 49.5
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 2.4e-41 172.9 207 51.2
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 4.2e-41 172.2 201 51.7
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.1e-41 171.4 201 51.7
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 7.1e-41 171.4 207 50.7
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 9.3e-41 171.0 215 49.8
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.1e-40 169.9 201 51.2
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 2.7e-40 169.5 202 52.5
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 3.5e-40 169.1 215 51.2
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 3.5e-40 169.1 233 42.5
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 3.5e-40 169.1 201 50.7
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 3.5e-40 169.1 217 51.6
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.8e-39 166.8 201 50.7
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.8e-39 166.8 199 51.8
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 2.3e-39 166.4 205 53.2
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.3e-39 166.4 208 51.0
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 3.9e-39 165.6 192 50.0
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 3.9e-39 165.6 214 43.5
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.9e-39 165.6 209 49.8
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 5.1e-39 165.2 218 48.6
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 6.7e-39 164.9 217 49.3
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 6.7e-39 164.9 215 45.1
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.1e-38 164.1 214 50.0
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 4.3e-38 162.2 226 44.2
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.3e-37 160.6 205 47.8
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.1e-37 159.8 191 49.7
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 6.2e-37 158.3 224 45.5
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 8.1e-37 157.9 201 48.8
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.4e-36 157.1 217 42.9
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 3.1e-36 156.0 197 50.3
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 5.3e-36 155.2 222 46.8
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.3e-36 155.2 214 44.9
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 9.0e-36 154.5 211 43.1
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 2.0e-35 153.3 218 45.0
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 2.6e-35 152.9 232 44.8
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.6e-35 152.9 208 45.2
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.6e-35 152.9 215 42.8
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.8e-35 151.8 228 43.0
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 5.8e-35 151.8 196 45.4
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 7.6e-35 151.4 219 45.2
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 7.6e-35 151.4 216 44.9
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.3e-34 150.6 216 43.1
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.9e-34 149.4 220 48.2
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 2.9e-34 149.4 196 46.9
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.8e-34 149.1 210 45.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 4.9e-34 148.7 191 47.6
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 4.9e-34 148.7 222 44.6
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.4e-33 147.1 207 45.9
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.4e-33 147.1 185 48.1
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.9e-33 146.7 220 46.8
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.9e-33 146.7 196 46.9
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.9e-33 146.7 208 42.8
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.2e-33 146.0 221 45.7
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.2e-33 146.0 221 45.7
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 4.2e-33 145.6 208 42.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 4.2e-33 145.6 208 42.3
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.2e-33 145.6 211 43.1
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.5e-33 145.2 227 44.1
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 5.5e-33 145.2 217 43.3
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 9.3e-33 144.4 209 44.5
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-32 142.9 211 43.1
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.7e-32 142.9 211 43.1
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.7e-32 142.9 211 43.1
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 3.5e-32 142.5 208 41.8
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 3.5e-32 142.5 208 41.8
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 3.5e-32 142.5 208 41.8
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 3.5e-32 142.5 222 39.6
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 3.5e-32 142.5 230 38.7
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 4.6e-32 142.1 204 42.2
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 4.6e-32 142.1 205 45.4
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.9e-32 141.4 220 45.9
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.0e-31 141.0 222 41.9
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.3e-31 140.6 214 42.1
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.8e-31 140.2 227 41.0
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.3e-31 139.8 227 43.6
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.0e-31 139.4 226 40.7
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 3.9e-31 139.0 211 42.2
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 3.9e-31 139.0 211 42.2
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 5.1e-31 138.7 196 42.9
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.1e-31 138.7 222 42.8
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 5.1e-31 138.7 217 38.7
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 6.7e-31 138.3 210 42.4
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.7e-31 138.3 218 41.3
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 6.7e-31 138.3 228 41.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 8.7e-31 137.9 193 48.2
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.1e-30 137.5 225 39.1
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-30 137.5 222 42.8
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.1e-30 137.5 212 42.0
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.9e-30 136.7 222 42.3
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.5e-30 136.3 211 39.8
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 3.3e-30 136.0 184 45.1
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 5.7e-30 135.2 224 37.9
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 7.4e-30 134.8 211 41.2
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 9.6e-30 134.4 211 40.8
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.1e-29 133.3 208 40.9
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 2.8e-29 132.9 207 41.1
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 2.8e-29 132.9 207 41.1
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-29 132.9 207 41.1
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 2.8e-29 132.9 159 47.2
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 3.7e-29 132.5 211 41.2
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.8e-29 132.1 222 40.1
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 4.8e-29 132.1 172 50.6
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.3e-29 131.7 198 42.4
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 8.2e-29 131.3 207 40.6
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.4e-28 130.6 200 45.0
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.4e-28 130.6 200 45.0
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-28 129.8 207 38.6
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.1e-28 129.4 222 42.8
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 3.1e-28 129.4 152 54.6
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.1e-28 129.0 203 41.9
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 5.3e-28 128.6 193 42.0
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 5.3e-28 128.6 208 42.3
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 6.9e-28 128.3 208 45.2
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 4.5e-27 125.6 207 38.2
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.3e-26 124.0 174 43.7
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.3e-26 124.0 182 46.7
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 5.5e-25 118.6 247 37.2
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.3e-25 117.9 169 45.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 9.3e-25 117.9 254 38.2
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.6e-24 117.1 233 41.2
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 3.5e-24 115.9 203 43.8
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.3e-23 114.0 237 36.7
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.8e-23 113.6 187 38.5
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 3.0e-23 112.8 247 34.8
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 6.7e-23 111.7 187 42.2
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.8e-21 106.3 197 37.1
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.1e-20 104.4 154 40.3
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.8e-20 103.6 125 47.2
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.8e-20 103.6 225 35.6
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.1e-20 102.4 154 39.6
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.0e-20 101.3 211 34.1
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 2.0e-19 100.1 202 36.1
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.2e-18 96.7 185 38.9
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.0e-18 95.5 188 38.3
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.5e-17 93.2 219 31.5
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.2e-17 91.7 188 36.7
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.6e-16 90.5 165 37.0
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 1.6e-16 90.5 110 46.4
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.1e-16 90.1 211 30.8
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 6.7e-15 85.1 185 31.9
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 6.7e-15 85.1 185 31.9
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-14 84.3 185 31.9
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-14 84.3 185 31.9
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 1.5e-14 84.0 185 31.4
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 5.7e-14 82.0 130 45.4
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.7e-13 80.5 218 29.8
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 3.7e-13 79.3 153 37.9
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.1e-12 77.8 216 30.6
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.8e-12 77.0 216 31.5
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.8e-12 77.0 179 32.4
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.5e-11 73.9 101 40.6
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.6e-11 73.2 175 30.9
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.9e-11 72.0 106 42.5
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 2.2e-10 70.1 75 56.0
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.9e-10 69.7 195 28.7
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 6.5e-10 68.6 201 27.9
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.4e-09 67.4 254 28.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 9.4e-09 64.7 101 38.6
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.0e-07 61.2 155 30.3
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 3.9e-07 59.3 174 33.9
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 7.4e-06 55.1 92 34.8


User provided reference genes

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