Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 2.0e-250 868.6 438 100.0
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 1.0e-209 733.4 440 85.7
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 3.6e-199 698.4 443 80.8
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 4.7e-199 698.0 467 77.3
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 2.3e-198 695.7 440 81.6
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 4.0e-198 694.9 443 80.6
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.5e-197 693.0 419 84.2
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 3.4e-197 691.8 419 84.0
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 3.7e-196 688.3 456 78.5
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 8.3e-196 687.2 441 79.6
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 9.2e-195 683.7 417 83.5
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.7e-193 679.5 441 80.3
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 1.7e-193 679.5 443 79.5
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 5.1e-193 677.9 389 87.4
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.1e-192 676.8 418 81.6
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 1.1e-192 676.8 419 82.8
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.8e-191 672.2 419 81.9
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 1.1e-190 670.2 416 81.5
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 1.1e-190 670.2 443 79.0
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 1.8e-190 669.5 418 81.8
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.3e-190 669.1 420 81.2
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 2.3e-190 669.1 441 78.7
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.3e-190 669.1 419 82.6
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 3.1e-190 668.7 439 78.6
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.2e-189 666.8 442 79.2
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 1.2e-189 666.8 380 88.7
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 2.0e-189 666.0 442 79.0
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.0e-189 666.0 440 78.9
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.4e-189 665.2 392 85.5
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 3.4e-189 665.2 423 80.6
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.7e-188 662.9 418 81.8
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 1.7e-188 662.9 438 79.5
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 2.9e-188 662.1 438 77.9
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 4.9e-188 661.4 425 81.2
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 4.1e-187 658.3 427 79.6
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 7.1e-187 657.5 442 77.8
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.1e-186 656.0 441 77.6
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 2.1e-186 656.0 441 77.6
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.7e-186 655.6 395 84.3
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 6.0e-186 654.4 443 77.7
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 6.0e-186 654.4 419 79.7
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 7.8e-186 654.1 443 77.7
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 7.8e-186 654.1 437 77.3
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.3e-185 653.3 440 77.7
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.7e-185 652.9 419 80.9
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.7e-185 652.9 419 80.7
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 2.3e-185 652.5 443 77.4
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 5.1e-185 651.4 440 78.4
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 8.6e-185 650.6 441 76.9
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.1e-184 650.2 383 84.9
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 1.1e-184 650.2 445 77.1
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 7.3e-184 647.5 445 76.4
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 1.6e-183 646.4 437 76.0
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.1e-183 646.0 422 78.9
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 3.6e-183 645.2 467 74.1
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 6.2e-183 644.4 420 79.3
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.1e-182 643.7 423 78.7
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 1.4e-182 643.3 441 75.7
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 1.8e-182 642.9 443 77.0
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 1.8e-182 642.9 420 79.3
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.0e-182 641.7 445 76.9
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 6.8e-182 641.0 379 85.8
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 8.9e-182 640.6 420 79.0
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 1.5e-181 639.8 392 84.4
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 9.9e-181 637.1 394 82.5
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.7e-180 636.3 443 76.3
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 2.9e-180 635.6 443 76.5
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.9e-179 632.9 441 76.6
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.4e-179 632.5 441 75.3
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 7.1e-179 630.9 396 82.1
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 9.2e-179 630.6 423 77.1
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.2e-178 630.2 352 88.4
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 1.3e-177 626.7 465 72.5
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 1.3e-177 626.7 426 76.5
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 1.3e-177 626.7 418 77.3
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.3e-177 626.7 442 74.9
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 5.1e-177 624.8 438 74.7
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 6.6e-177 624.4 442 74.7
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 1.1e-176 623.6 444 75.5
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 1.1e-176 623.6 438 75.3
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.1e-176 623.6 418 77.0
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 1.9e-176 622.9 447 74.5
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 2.5e-176 622.5 419 77.6
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 5.6e-176 621.3 396 79.8
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 7.3e-176 620.9 441 74.4
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 2.8e-175 619.0 409 78.5
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 4.7e-175 618.2 441 73.7
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 1.1e-174 617.1 439 73.8
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.1e-174 617.1 439 73.8
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 3.1e-174 615.5 441 73.2
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 4.0e-174 615.1 437 74.8
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 1.5e-173 613.2 338 90.2
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 2.6e-173 612.5 419 74.9
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 3.4e-173 612.1 375 83.2
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 7.6e-173 610.9 376 82.2
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 9.9e-173 610.5 375 82.1
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 8.4e-172 607.4 419 77.3
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 4.2e-171 605.1 445 72.6
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 8.7e-169 597.4 368 81.5
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 4.8e-167 591.7 368 80.7
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.8e-166 589.7 372 77.7
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 2.4e-166 589.3 370 80.0
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.1e-166 589.0 377 76.4
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 3.1e-166 589.0 406 74.9
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 2.2e-164 582.8 421 72.4
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.2e-164 582.8 399 72.9
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 2.9e-164 582.4 398 74.4
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 5.4e-163 578.2 370 77.0
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 2.7e-162 575.9 380 80.8
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 9.6e-160 567.4 324 85.8
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 4.8e-159 565.1 446 67.9
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 8.1e-159 564.3 446 67.7
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 6.9e-158 561.2 433 68.6
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.3e-148 530.4 380 74.7
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.3e-148 530.4 315 84.1
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 8.4e-148 527.7 318 82.1
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 5.1e-145 518.5 292 88.4
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 2.0e-136 490.0 358 70.7
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 2.2e-135 486.5 392 64.5
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.2e-135 486.5 422 61.8
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 1.8e-134 483.4 361 68.4
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.9e-132 476.1 361 67.3
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.8e-132 475.7 361 68.1
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 5.5e-131 471.9 398 62.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.1e-130 469.9 338 69.8
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 3.6e-130 469.2 321 74.5
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 8.8e-129 464.5 396 62.1
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 8.8e-129 464.5 396 62.1
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 8.8e-129 464.5 396 62.6
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 8.8e-129 464.5 329 75.7
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 5.7e-128 461.8 398 61.6
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 2.8e-127 459.5 398 61.3
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 4.1e-126 455.7 467 57.2
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 4.8e-119 432.2 361 66.8
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 8.2e-119 431.4 355 59.4
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.8e-118 430.3 331 68.6
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 5.3e-118 428.7 375 58.7
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 6.1e-114 415.2 321 65.4
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 9.1e-110 401.4 291 69.1
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 7.5e-104 381.7 233 83.3
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 2.3e-84 317.0 230 71.7
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.8e-73 280.8 243 62.6
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.9e-71 272.7 202 69.8
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 1.7e-68 264.2 201 65.2
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.9e-63 246.9 283 51.2
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.7e-60 237.7 285 48.1
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 1.8e-57 227.6 179 63.7
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 1.7e-55 221.1 179 62.6
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 6.4e-55 219.2 158 70.3
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 8.1e-50 202.2 320 39.7
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 4.0e-49 199.9 175 57.7
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.8e-44 184.5 100 89.0
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.1e-43 181.8 157 63.1
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 1.5e-43 181.4 169 56.8
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 2.4e-41 174.1 102 85.3
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 1.5e-40 171.4 175 52.6
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 5.8e-40 169.5 110 76.4
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 4.2e-38 163.3 168 54.2
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 5.5e-38 162.9 110 73.6
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 1.5e-35 154.8 122 68.9
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 1.9e-35 154.5 212 40.1
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 5.7e-35 152.9 109 71.6
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 7.4e-35 152.5 135 63.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 3.7e-34 150.2 86 86.0
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.7e-29 134.0 72 91.7
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.1e-27 128.6 85 72.9
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 5.9e-24 116.3 74 77.0
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 3.3e-19 100.5 115 51.3
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 4.1e-17 93.6 178 37.6
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 4.2e-14 83.6 49 83.7
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-13 82.0 78 56.4
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-13 82.0 78 56.4
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.1e-11 75.5 53 66.0
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.1e-09 67.4 36 88.9
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 9.1e-09 65.9 57 59.6
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 2.6e-08 64.3 45 73.3
arahy.Tifrunner.gnm1.ann1.LHV34C Arachis hypogaea HOM05D003910 ORTHO05D004622 8.5e-07 59.3 52 61.5


User provided reference genes

Program Settings