Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18922 Striga asiatica HOM05D003077 ORTHO05D003354 3.1e-169 598.6 346 100.0
SGA_v2.0_scaffold24G10423 Striga asiatica HOM05D003077 ORTHO05D003354 3.9e-79 299.3 509 45.2
MSTRG.25361 Avicennia marina HOM05D003077 ORTHO05D003354 2.4e-60 236.9 508 36.6
Migut.C01065 Erythranthe guttata HOM05D003077 ORTHO05D003354 5.8e-59 232.3 491 40.3
MSTRG.1414 Avicennia marina HOM05D003077 ORTHO05D003354 7.6e-59 231.9 508 37.6
Migut.N03265 Erythranthe guttata HOM05D003077 ORTHO05D003354 4.7e-53 212.6 492 35.2
SalBow7G2753 Salvia bowleyana HOM05D003077 ORTHO05D003354 4.7e-53 212.6 503 38.4
SalBow7G0800 Salvia bowleyana HOM05D003077 ORTHO05D003354 8.1e-53 211.8 503 38.4
Oeu040401.1 Olea europaea HOM05D003077 ORTHO05D003354 1.2e-51 208.0 497 38.2
SalBow2G2699 Salvia bowleyana HOM05D003077 ORTHO05D003354 1.1e-44 184.9 499 33.3
SGA_v2.0_scaffold25G11135 Striga asiatica HOM05D003077 ORTHO05D003354 5.6e-38 162.5 581 32.0
unitig_0.g901 Utricularia gibba HOM05D003077 ORTHO05D003354 2.1e-37 160.6 468 32.3
SGA_v2.0_scaffold28G11976 Striga asiatica HOM05D003077 ORTHO05D003354 6.9e-36 155.6 532 30.6
unitig_61.g26062 Utricularia gibba HOM05D003077 ORTHO05D003354 1.7e-34 151.0 461 32.3
GSVIVG01008808001 Vitis vinifera HOM05D003077 ORTHO05D003354 7.1e-33 145.6 425 31.8
Actinidia21280 Actinidia chinensis HOM05D003077 ORTHO05D003354 1.0e-31 141.7 508 30.3
Nitab4.5_0001168g0100 Nicotiana tabacum HOM05D003077 ORTHO05D003354 1.0e-31 141.7 500 29.2
TPR.G28812 Trifolium pratense HOM05D003077 ORTHO05D003354 1.1e-30 138.3 408 34.8
Nitab4.5_0003863g0040 Nicotiana tabacum HOM05D003077 ORTHO05D003354 1.5e-30 137.9 507 28.8
Hma1.2p1_0014F.1_g010220 Hydrangea macrophylla HOM05D003077 ORTHO05D003354 1.9e-30 137.5 512 29.9
FvH4_2g27830 Fragaria vesca HOM05D003077 ORTHO05D003354 9.6e-30 135.2 445 30.1
Oeu033990.1 Olea europaea HOM05D003077 ORTHO05D003354 1.3e-29 134.8 176 56.8
Solyc11g005130.2 Solanum lycopersicum HOM05D003077 ORTHO05D003354 2.1e-29 134.0 505 29.5
Sopen11g001130 Solanum pennellii HOM05D003077 ORTHO05D003354 2.1e-29 134.0 505 29.5
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 3.7e-29 133.3 435 32.0
FAN15G0848 Fragaria x ananassa HOM05D003077 ORTHO05D003354 1.1e-28 131.7 445 29.7
Peaxi162Scf00066g00134 Petunia axillaris HOM05D003077 ORTHO05D003354 4.0e-28 129.8 506 28.9
CSS0035070 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 3.4e-27 126.7 522 28.4
Actinidia15214 Actinidia chinensis HOM05D003077 ORTHO05D003354 5.8e-27 125.9 496 28.8
Lalb_Chr10g0101491 Lupinus albus HOM05D003077 ORTHO05D003354 1.0e-26 125.2 455 30.5
Manes.18G082300 Manihot esculenta HOM05D003077 ORTHO05D003354 1.0e-26 125.2 515 29.1
Ciclev10000343m.g Citrus clementina HOM05D003077 ORTHO05D003354 2.9e-26 123.6 502 27.9
Sc02g0004730 Simmondsia chinensis HOM05D003077 ORTHO05D003354 2.9e-26 123.6 469 27.9
CiPaw.16G022800 Carya illinoinensis HOM05D003077 ORTHO05D003354 1.4e-25 121.3 517 28.6
Prupe.1G489600 Prunus persica HOM05D003077 ORTHO05D003354 1.4e-25 121.3 499 27.3
CARHR021970 Cardamine hirsuta HOM05D003077 ORTHO05D003354 1.9e-25 120.9 466 30.7
Sc15g0007510 Simmondsia chinensis HOM05D003077 ORTHO05D003354 2.5e-25 120.6 503 27.4
CAN.G716.6 Capsicum annuum HOM05D003077 ORTHO05D003354 4.2e-25 119.8 507 27.2
Ca_16606_v3 Cicer arietinum L. HOM05D003077 ORTHO05D005230 4.2e-25 119.8 487 29.2
CANSAT11G0740 Cannabis sativa HOM05D003077 ORTHO05D003354 1.6e-24 117.9 433 29.3
CANSAT25G3561 Cannabis sativa HOM05D003077 ORTHO05D003354 2.1e-24 117.5 495 28.1
CiPaw.15G031400 Carya illinoinensis HOM05D003077 ORTHO05D003354 2.1e-24 117.5 496 29.2
VMungo1309G2236 Vigna mungo HOM05D003077 ORTHO05D003354 2.1e-24 117.5 483 29.0
Sed0016256 Sechium edule HOM05D003077 ORTHO05D003354 2.7e-24 117.1 516 28.7
Manes.02G168300 Manihot esculenta HOM05D003077 ORTHO05D003354 6.0e-24 115.9 520 27.5
ClCG08G006020 Citrullus lanatus HOM05D003077 ORTHO05D003354 1.3e-23 114.8 509 28.7
FAN24G2697 Fragaria x ananassa HOM05D003077 ORTHO05D003354 1.3e-23 114.8 499 26.7
Glyma.06G117400 Glycine max HOM05D003077 ORTHO05D003354 1.8e-23 114.4 496 28.6
Rhsim11G0071700 Rhododendron simsii HOM05D003077 ORTHO05D003354 1.8e-23 114.4 532 26.9
Carub.0001s2104 Capsella rubella HOM05D003077 ORTHO05D003354 2.3e-23 114.0 442 29.9
CsaV3_6G034070 Cucumis sativus L. HOM05D003077 ORTHO05D003354 2.3e-23 114.0 507 28.0
Thecc.08G132900 Theobroma cacao HOM05D003077 ORTHO05D003354 2.3e-23 114.0 464 28.2
FAN20G3132 Fragaria x ananassa HOM05D003077 ORTHO05D003354 3.0e-23 113.6 499 26.9
Gohir.A02G110500 Gossypium hirsutum HOM05D003077 ORTHO05D003354 3.0e-23 113.6 498 27.3
Gohir.D03G069004 Gossypium hirsutum HOM05D003077 ORTHO05D003354 3.0e-23 113.6 519 27.0
Atru.chr13.1565 Acer truncatum HOM05D003077 ORTHO05D003354 3.9e-23 113.2 495 28.3
COL.COLO4_08846 Corchorus olitorius HOM05D003077 ORTHO05D003354 3.9e-23 113.2 510 27.5
EL10Ac1g01345 Beta vulgaris HOM05D003077 ORTHO05D003354 5.1e-23 112.8 497 26.8
Lj1g0018738 Lotus japonicus HOM05D003077 ORTHO05D003354 5.1e-23 112.8 485 29.3
Cfa018128 Carpinus fangiana HOM05D003077 ORTHO05D003354 6.7e-23 112.5 507 27.8
Cc10_g12800 Coffea canephora HOM05D003077 ORTHO05D003354 6.7e-23 112.5 528 28.6
Gorai.013G107800 Gossypium raimondii HOM05D003077 ORTHO05D003354 6.7e-23 112.5 520 26.9
Phvul.001G070500 Phaseolus vulgaris HOM05D003077 ORTHO05D003354 6.7e-23 112.5 511 27.6
arahy.Tifrunner.gnm1.ann1.RUFP3A Arachis hypogaea HOM05D003077 ORTHO05D003354 1.1e-22 111.7 483 27.1
Medtr3g088585 Medicago truncatula HOM05D003077 ORTHO05D003354 1.5e-22 111.3 490 28.6
Phvul.009G129800 Phaseolus vulgaris HOM05D003077 ORTHO05D003354 1.9e-22 110.9 484 28.7
MELO3C010653.2 Cucumis melo HOM05D003077 ORTHO05D003354 2.5e-22 110.5 508 28.5
Dinv14687 Davidia involucrata HOM05D003077 ORTHO05D003354 2.5e-22 110.5 191 45.5
PGR042G0595 Punica granatum HOM05D003077 ORTHO05D003354 2.5e-22 110.5 495 29.5
AT1G21610 Arabidopsis thaliana HOM05D003077 ORTHO05D003354 4.3e-22 109.8 460 29.3
arahy.Tifrunner.gnm1.ann1.PT3H3P Arachis hypogaea HOM05D003077 ORTHO05D003354 7.4e-22 109.0 490 26.7
Glyma.14G154900 Glycine max HOM05D003077 ORTHO05D003354 7.4e-22 109.0 502 28.1
Lsat_1_v5_gn_6_110261 Lactuca sativa HOM05D003077 ORTHO05D003354 7.4e-22 109.0 225 36.4
RcHm_v2.0_Chr6g0296701 Rosa chinensis HOM05D003077 ORTHO05D003354 7.4e-22 109.0 499 28.5
MD08G1159200 Malus domestica HOM05D003077 ORTHO05D003354 9.7e-22 108.6 499 26.5
Sp1g19140 Schrenkiella parvula HOM05D003077 ORTHO05D003354 9.7e-22 108.6 191 43.5
Duzib093G0755 Durio zibethinus HOM05D003077 ORTHO05D003354 1.3e-21 108.2 494 27.5
Ca_12646_v3 Cicer arietinum L. HOM05D003077 ORTHO05D003354 1.6e-21 107.8 494 26.5
FAN27G2585 Fragaria x ananassa HOM05D003077 ORTHO05D003354 1.6e-21 107.8 499 26.7
Ah.05g169130 Amaranthus hybridus HOM05D003077 ORTHO05D003354 2.2e-21 107.5 202 38.1
Psat5g084800 Pisum sativum HOM05D003077 ORTHO05D003354 4.8e-21 106.3 182 46.7
Potri.005G182300 Populus trichocarpa HOM05D003077 ORTHO05D003354 4.8e-21 106.3 509 26.5
Glyma.04G245700 Glycine max HOM05D003077 ORTHO05D003354 8.2e-21 105.5 487 28.5
TAR625G0294 Trochodendron aralioides HOM05D003077 ORTHO05D003354 8.2e-21 105.5 183 41.5
vmacro00865 Vaccinium macrocarpon HOM05D003077 ORTHO05D003354 1.1e-20 105.1 532 27.3
AL1G34750 Arabidopsis lyrata HOM05D003077 ORTHO05D003354 5.3e-20 102.8 470 28.5
MBI03_g39653_MAGBIO Magnolia biondii HOM05D003077 ORTHO05D003354 5.3e-20 102.8 188 38.8
Sabra02G0061700 Salix brachista HOM05D003077 ORTHO05D003354 6.9e-20 102.4 232 36.6
Aa31LG4G7340 Aethionema arabicum HOM05D003077 ORTHO05D003354 9.0e-20 102.1 189 41.3
SGA_v2.0_scaffold81G26136 Striga asiatica HOM05D003077 ORTHO05D003354 9.0e-20 102.1 229 39.7
Potri.002G078800 Populus trichocarpa HOM05D003077 ORTHO05D003354 1.2e-19 101.7 248 35.1
Glyma.13G032500 Glycine max HOM05D003077 ORTHO05D003354 1.5e-19 101.3 499 28.1
CSS0012408 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 2.0e-19 100.9 390 29.0
Lsat_1_v5_gn_1_7800 Lactuca sativa HOM05D003077 ORTHO05D003354 2.0e-19 100.9 481 26.8
DCAR_016656 Daucus carota HOM05D003077 ORTHO05D003354 2.6e-19 100.5 264 33.3
Lj1g0006258 Lotus japonicus HOM05D003077 ORTHO05D003354 3.4e-19 100.1 464 27.6
Gohir.A02G071200 Gossypium hirsutum HOM05D003077 ORTHO05D003354 4.5e-19 99.8 198 36.9
C06p31320 Brassica napus HOM05D003077 ORTHO05D003354 5.9e-19 99.4 440 27.3
THA.LOC104813681 Tarenaya hassleriana HOM05D003077 ORTHO05D003354 1.0e-18 98.6 193 41.5
Nn5g28434 Nelumbo nucifera HOM05D003077 ORTHO05D003354 1.3e-18 98.2 211 37.9
CDE02G1774 Ceratophyllum demersum HOM05D003077 ORTHO05D003354 2.2e-18 97.4 482 26.6
HanXRQChr05g0149791 Helianthus annuus HOM05D003077 ORTHO05D003354 2.2e-18 97.4 227 34.8
TAR628G1099 Trochodendron aralioides HOM05D003077 ORTHO05D003354 2.2e-18 97.4 175 42.9
Sabra05G0138200 Salix brachista HOM05D003077 ORTHO05D003354 3.8e-18 96.7 229 35.8
DCAR_014371 Daucus carota HOM05D003077 ORTHO05D003354 5.0e-18 96.3 174 41.4
Sp5g32490 Schrenkiella parvula HOM05D003077 ORTHO05D003354 5.0e-18 96.3 465 28.0
Gohir.D02G078300 Gossypium hirsutum HOM05D003077 ORTHO05D003354 6.5e-18 95.9 188 36.2
Gorai.005G087800 Gossypium raimondii HOM05D003077 ORTHO05D003354 6.5e-18 95.9 188 36.2
Lalb_Chr11g0066171 Lupinus albus HOM05D003077 ORTHO05D003354 6.5e-18 95.9 501 27.1
VMungo0647G0503 Vigna mungo HOM05D003077 ORTHO05D003354 6.5e-18 95.9 186 40.3
C06p51470 Brassica napus HOM05D003077 ORTHO05D003354 8.5e-18 95.5 473 27.1
TWI34G0175 Tripterygium wilfordii HOM05D003077 ORTHO05D003354 1.1e-17 95.1 508 24.8
BraA07t31806Z Brassica rapa HOM05D003077 ORTHO05D003354 1.4e-17 94.7 482 26.6
BcaB05g25039 Brassica carinata HOM05D003077 ORTHO05D003354 2.5e-17 94.0 434 29.3
CSS0019818 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 3.2e-17 93.6 432 27.1
A07p42850 Brassica napus HOM05D003077 ORTHO05D003354 5.5e-17 92.8 473 26.8
BolC2t09477H Brassica oleracea HOM05D003077 ORTHO05D003354 5.5e-17 92.8 438 27.9
BolC6t38271H Brassica oleracea HOM05D003077 ORTHO05D003354 9.4e-17 92.0 438 26.5
BraA02t07140Z Brassica rapa HOM05D003077 ORTHO05D003354 9.4e-17 92.0 438 28.3
Nn1g08962 Nelumbo nucifera HOM05D003077 ORTHO05D003354 9.4e-17 92.0 174 40.2
C02p34450 Brassica napus HOM05D003077 ORTHO05D003354 1.2e-16 91.7 428 28.0
Aqoxy5G02381 Aquilegia oxysepala HOM05D003077 ORTHO05D003354 1.6e-16 91.3 179 41.3
SHI09202 Sapria himalayana HOM05D003077 ORTHO05D003354 1.6e-16 91.3 202 40.6
BraA07t30449Z Brassica rapa HOM05D003077 ORTHO05D003354 2.1e-16 90.9 442 28.1
A07p28050 Brassica napus HOM05D003077 ORTHO05D003354 2.7e-16 90.5 441 27.7
CSS0038864 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 4.6e-16 89.7 419 27.0
THA.LOC104812084 Tarenaya hassleriana HOM05D003077 ORTHO05D003354 4.6e-16 89.7 447 27.7
BcaC03g15730 Brassica carinata HOM05D003077 ORTHO05D003354 7.9e-16 89.0 428 28.0
BolC6t40165H Brassica oleracea HOM05D003077 ORTHO05D003354 7.9e-16 89.0 473 27.1
TWI32G1117 Tripterygium wilfordii HOM05D003077 ORTHO05D003354 7.9e-16 89.0 495 25.5
Medtr1g029680 Medicago truncatula HOM05D003077 ORTHO05D003354 1.0e-15 88.6 523 26.2
ECA246G2541 Erigeron canadensis HOM05D003077 ORTHO05D003354 1.8e-15 87.8 273 32.6
Psat6g040480 Pisum sativum HOM05D003077 ORTHO05D003354 2.3e-15 87.4 489 24.7
VMungo1215G2387 Vigna mungo HOM05D003077 ORTHO05D003354 2.3e-15 87.4 164 40.9
Zm00001eb145640 Zea mays HOM05D003077 ORTHO05D003354 3.9e-15 86.7 160 47.5
Dinv14686 Davidia involucrata HOM05D003077 ORTHO05D003354 5.1e-15 86.3 182 35.7
ATR0584G207 Amborella trichopoda HOM05D003077 ORTHO05D003354 6.7e-15 85.9 195 35.4
A02p21210 Brassica napus HOM05D003077 ORTHO05D003354 6.7e-15 85.9 428 28.7
Carub.0002s2419 Capsella rubella HOM05D003077 ORTHO05D003354 6.7e-15 85.9 434 27.4
Lalb_Chr23g0271171 Lupinus albus HOM05D003077 ORTHO05D003354 8.8e-15 85.5 492 26.0
MBI06_g35211_MAGBIO Magnolia biondii HOM05D003077 ORTHO05D003354 5.7e-14 82.8 221 32.1
Sopen11g018240 Solanum pennellii HOM05D003077 ORTHO05D003354 5.7e-14 82.8 106 48.1
Lj4C682T14 Lonicera japonica HOM05D003077 ORTHO05D003354 7.4e-14 82.4 229 31.9
Sed0001846 Sechium edule HOM05D003077 ORTHO05D003354 9.7e-14 82.0 537 26.6
PSO170G0953 Papaver somniferum HOM05D003077 ORTHO05D003354 1.7e-13 81.3 179 38.0
BcaC08g47619 Brassica carinata HOM05D003077 ORTHO05D003354 2.8e-13 80.5 452 26.3
CAN.G1347.5 Capsicum annuum HOM05D003077 ORTHO05D003354 2.8e-13 80.5 106 47.2
AL2G37510 Arabidopsis lyrata HOM05D003077 ORTHO05D003354 4.8e-13 79.7 182 36.8
BcaB02g07101 Brassica carinata HOM05D003077 ORTHO05D003354 6.3e-13 79.3 425 25.4
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 6.3e-13 79.3 485 23.9
Hma1.2p1_2178F.1_g316190 Hydrangea macrophylla HOM05D003077 ORTHO05D003354 8.2e-13 79.0 81 54.3
Thhalv10018217m.g Eutrema salsugineum HOM05D003077 ORTHO05D003354 1.1e-12 78.6 447 26.2
Cpa.g.sc64.169 Carica papaya HOM05D003077 ORTHO05D003354 1.8e-12 77.8 176 38.1
VMungo0647G0799 Vigna mungo HOM05D003077 ORTHO05D003354 2.4e-12 77.4 64 68.8
PSO528G0274 Papaver somniferum HOM05D003077 ORTHO05D003354 3.1e-12 77.0 179 36.9
AT1G77310 Arabidopsis thaliana HOM05D003077 ORTHO05D003354 5.3e-12 76.3 459 25.9
BcaC08g45481 Brassica carinata HOM05D003077 ORTHO05D003354 2.0e-11 74.3 186 33.3
Aa31LG7G5590 Aethionema arabicum HOM05D003077 ORTHO05D003354 5.9e-11 72.8 449 26.5
TPR.G30547 Trifolium pratense HOM05D003077 ORTHO05D003354 7.7e-11 72.4 68 60.3
Cpa.g.sc64.170 Carica papaya HOM05D003077 ORTHO05D003354 2.9e-10 70.5 115 44.3
Aqoxy2G02388 Aquilegia oxysepala HOM05D003077 ORTHO05D003354 8.5e-10 68.9 159 36.5
AUR62013425 Chenopodium quinoa HOM05D003077 ORTHO05D003354 1.4e-09 68.2 369 24.7
Atru.chr4.997 Acer truncatum HOM05D003077 ORTHO05D003354 1.9e-09 67.8 73 54.8
Gohir.D09G004800 Gossypium hirsutum HOM05D003077 ORTHO05D003354 1.9e-09 67.8 342 25.7
Duzib041G0777 Durio zibethinus HOM05D003077 ORTHO05D003354 2.5e-09 67.4 396 24.7
SEGI_13465 Sequoiadendron giganteum HOM05D003077 ORTHO05D003354 4.2e-09 66.6 174 33.9
Duzib264G0391 Durio zibethinus HOM05D003077 ORTHO05D003354 5.5e-09 66.2 106 40.6
Duzib264G0967 Durio zibethinus HOM05D003077 ORTHO05D003354 5.5e-09 66.2 106 40.6
Gorai.006G006400 Gossypium raimondii HOM05D003077 ORTHO05D003354 5.5e-09 66.2 350 25.4
Sabra07G0083500 Salix brachista HOM05D003077 ORTHO05D003354 7.2e-09 65.9 106 38.7
TAR229G0004 Trochodendron aralioides HOM05D003077 ORTHO05D003354 1.2e-08 65.1 499 24.2
CDE08G0053 Ceratophyllum demersum HOM05D003077 ORTHO05D003354 1.6e-08 64.7 77 50.6
Cpa.g.sc37.9 Carica papaya HOM05D003077 ORTHO05D003354 3.6e-08 63.5 132 37.1
SMO367G1174 Selaginella moellendorffii HOM05D003077 ORTHO05D003354 3.6e-08 63.5 159 35.8
RcHm_v2.0_Chr6g0293421 Rosa chinensis HOM05D003077 ORTHO05D003354 4.7e-08 63.2 104 42.3
Potri.005G067800 Populus trichocarpa HOM05D003077 ORTHO05D003354 6.1e-08 62.8 145 32.4
COL.COLO4_35810 Corchorus olitorius HOM05D003077 ORTHO05D003354 7.9e-08 62.4 428 25.9
Potri.007G101201 Populus trichocarpa HOM05D003077 ORTHO05D003354 1.4e-07 61.6 163 33.1
Mapoly0042s0059 Marchantia polymorpha HOM05D003077 ORTHO05D003354 1.8e-07 61.2 190 30.0
SMO116G0073 Selaginella moellendorffii HOM05D003077 ORTHO05D003354 1.8e-07 61.2 234 29.1
Pp3c13_4490 Physcomitrium patens HOM05D003077 ORTHO05D003354 2.3e-07 60.8 159 31.4
Thecc.01G136900 Theobroma cacao HOM05D003077 ORTHO05D003354 3.9e-07 60.1 65 52.3
Oeu020901.1 Olea europaea HOM05D003077 ORTHO05D003354 1.5e-06 58.2 303 25.4
HPP92_025168 Vanilla planifolia HOM05D003077 ORTHO05D003354 2.6e-06 57.4 76 44.7
Pp3c3_8000 Physcomitrium patens HOM05D003077 ORTHO05D003354 4.4e-06 56.6 164 29.3


User provided reference genes

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