Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 0.0e+00 1466.8 746 100.0
SGA_v2.0_scaffold130G34365 Striga asiatica HOM05D000137 ORTHO05D000503 6.9e-41 173.3 218 51.4
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 1.9e-30 138.7 153 48.4
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 4.6e-29 134.0 243 38.7
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 8.5e-23 113.2 83 61.4
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 8.5e-23 113.2 83 61.4
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 2.9e-15 88.2 120 40.0
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 5.0e-15 87.4 157 33.8
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 9.4e-14 83.2 165 31.5
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.0e-12 79.7 162 31.5
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.3e-12 78.6 360 24.7
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 2.3e-12 78.6 163 31.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 5.1e-12 77.4 145 31.0
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 5.1e-12 77.4 181 29.3
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 6.7e-12 77.0 145 31.0
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 8.8e-12 76.6 166 36.7
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 8.8e-12 76.6 149 30.9
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.0e-11 75.5 158 29.1
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 2.6e-11 75.1 162 31.5
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 2.6e-11 75.1 163 31.9
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 3.3e-11 74.7 165 29.7
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 3.3e-11 74.7 167 31.1
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 9.7e-11 73.2 140 33.6
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.3e-10 72.8 107 37.4
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.3e-10 72.8 99 38.4
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.2e-10 72.0 152 30.3
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 2.2e-10 72.0 58 55.2
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 2.2e-10 72.0 170 30.6
SGA_v2.0_scaffold52G18913 Striga asiatica HOM05D006236 ORTHO05D003486 2.2e-10 72.0 108 38.0
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 2.8e-10 71.6 113 36.3
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 4.8e-10 70.9 105 40.0
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 4.8e-10 70.9 157 28.0
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 4.8e-10 70.9 156 30.1
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 6.3e-10 70.5 191 28.3
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 8.2e-10 70.1 67 44.8
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.1e-09 69.7 174 32.2
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.8e-09 68.9 107 32.7
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 2.4e-09 68.6 249 28.5
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 3.1e-09 68.2 208 26.0
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 4.1e-09 67.8 176 27.8
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 4.1e-09 67.8 158 27.8
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 4.1e-09 67.8 150 28.0
Peaxi162Scf00066g00424 Petunia axillaris HOM05D020480 ORTHO05D003486 5.3e-09 67.4 57 50.9
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 5.3e-09 67.4 114 32.5
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 5.3e-09 67.4 157 26.8
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 6.9e-09 67.0 179 29.1
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 9.1e-09 66.6 163 27.6
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 9.1e-09 66.6 170 27.1
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 9.1e-09 66.6 170 31.8
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.2e-08 66.2 71 40.8
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.2e-08 66.2 144 31.9
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.5e-08 65.9 114 31.6
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 2.0e-08 65.5 171 27.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 2.6e-08 65.1 60 55.0
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 2.6e-08 65.1 161 29.8
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 2.6e-08 65.1 200 26.0
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.4e-08 64.7 161 29.8
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 3.4e-08 64.7 164 31.7
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 4.5e-08 64.3 51 49.0
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 5.9e-08 63.9 59 49.2
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 7.7e-08 63.5 163 30.1
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.0e-07 63.2 117 28.2
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.0e-07 63.2 103 35.0
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.3e-07 62.8 104 33.7
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.7e-07 62.4 79 39.2
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.7e-07 62.4 105 32.4
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 2.2e-07 62.0 163 30.1
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 2.9e-07 61.6 308 24.0
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 2.9e-07 61.6 57 50.9
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.9e-07 61.6 155 29.0
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 2.9e-07 61.6 159 25.8
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.9e-07 61.6 106 36.8
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.9e-07 61.6 182 26.4
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 5.0e-07 60.8 159 29.6
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 5.0e-07 60.8 59 45.8
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 5.0e-07 60.8 59 45.8
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 6.5e-07 60.5 215 22.8
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 8.5e-07 60.1 153 28.1
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 8.5e-07 60.1 181 26.0
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 8.5e-07 60.1 112 31.2
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.4e-06 59.3 106 32.1
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 1.4e-06 59.3 103 31.1
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.4e-06 59.3 116 32.8
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.5e-06 58.5 52 44.2
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 3.2e-06 58.2 51 45.1
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.2e-06 58.2 99 32.3
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 4.2e-06 57.8 78 37.2
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 4.2e-06 57.8 51 45.1
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 4.2e-06 57.8 108 32.4
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 5.5e-06 57.4 101 34.7
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 7.2e-06 57.0 107 32.7
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.2e-06 57.0 49 44.9
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 7.2e-06 57.0 105 32.4
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 9.4e-06 56.6 116 30.2
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 9.4e-06 56.6 148 31.1
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.4e-06 56.6 37 56.8
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 9.4e-06 56.6 121 31.4


User provided reference genes

Program Settings