Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 6.4e-70 267.3 136 100.0
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 3.5e-44 181.8 138 69.6
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 7.4e-42 174.1 131 73.3
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 2.2e-38 162.5 127 67.7
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 1.0e-30 137.1 132 56.8
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 1.3e-30 136.7 129 62.0
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 1.7e-30 136.3 132 56.8
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 3.8e-30 135.2 139 55.4
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 1.6e-28 129.8 129 58.9
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 1.3e-27 126.7 126 58.7
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 6.7e-27 124.4 127 59.8
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 8.7e-27 124.0 127 59.8
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.9e-26 122.9 127 59.1
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 3.3e-26 122.1 132 52.3
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 3.3e-26 122.1 127 55.9
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 1.3e-25 120.2 141 52.5
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.6e-25 119.8 127 55.9
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 1.6e-25 119.8 144 50.7
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 2.2e-25 119.4 130 59.2
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 2.8e-25 119.0 133 52.6
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 4.8e-25 118.2 128 51.6
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 6.3e-25 117.9 131 53.4
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 8.2e-25 117.5 129 52.7
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 1.8e-24 116.3 131 53.4
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 3.1e-24 115.5 126 54.0
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 3.1e-24 115.5 126 50.8
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 3.1e-24 115.5 126 52.4
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 3.1e-24 115.5 128 53.1
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 4.1e-24 115.2 130 53.1
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 4.1e-24 115.2 126 54.0
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 6.9e-24 114.4 136 50.0
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 6.9e-24 114.4 129 50.4
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 9.0e-24 114.0 134 51.5
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 9.0e-24 114.0 126 51.6
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 9.0e-24 114.0 131 51.9
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 2.6e-23 112.5 129 52.7
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 2.6e-23 112.5 126 54.8
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.6e-23 112.5 127 53.5
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 2.6e-23 112.5 131 51.9
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 2.6e-23 112.5 131 51.9
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 4.5e-23 111.7 132 48.5
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 5.9e-23 111.3 129 51.9
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 7.6e-23 110.9 129 52.7
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 7.6e-23 110.9 127 55.1
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 1.0e-22 110.5 126 53.2
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.0e-22 110.5 142 51.4
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 1.3e-22 110.2 134 51.5
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.7e-22 109.8 141 48.9
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.2e-22 109.4 141 47.5
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 2.2e-22 109.4 138 52.2
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 5.0e-22 108.2 130 52.3
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 6.5e-22 107.8 128 50.8
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 8.5e-22 107.5 129 50.4
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 8.5e-22 107.5 138 47.1
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 1.1e-21 107.1 133 48.1
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 1.4e-21 106.7 143 48.3
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 1.4e-21 106.7 127 49.6
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 1.9e-21 106.3 135 49.6
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.9e-21 106.3 138 50.7
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 1.9e-21 106.3 127 52.8
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 3.2e-21 105.5 130 48.5
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.2e-21 105.5 141 46.8
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 3.2e-21 105.5 136 47.8
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 5.5e-21 104.8 142 46.5
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 7.2e-21 104.4 142 47.2
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 7.2e-21 104.4 131 48.9
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 9.4e-21 104.0 143 47.6
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 9.4e-21 104.0 70 75.7
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 2.1e-20 102.8 126 50.8
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 2.7e-20 102.4 129 48.8
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 2.7e-20 102.4 142 47.9
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 3.6e-20 102.1 139 47.5
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 3.6e-20 102.1 128 49.2
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 3.6e-20 102.1 127 46.5
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 4.6e-20 101.7 61 75.4
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 4.6e-20 101.7 127 44.9
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 1.4e-19 100.1 126 47.6
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 3.9e-19 98.6 130 46.2
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 3.9e-19 98.6 130 46.2
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.1e-19 98.2 126 46.0
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 6.7e-19 97.8 153 39.9
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 1.1e-18 97.1 127 50.4
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 1.1e-18 97.1 127 46.5
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.5e-18 96.7 130 46.2
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.5e-18 96.7 130 46.2
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 1.5e-18 96.7 126 45.2
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 3.3e-18 95.5 127 48.8
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 5.7e-18 94.7 128 46.1
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 1.3e-17 93.6 127 45.7
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.7e-17 93.2 149 41.6
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 4.8e-17 91.7 135 42.2
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 8.2e-17 90.9 126 46.0
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.1e-16 89.0 131 43.5
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 5.3e-16 88.2 72 61.1
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 6.9e-16 87.8 146 46.6
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 5.0e-14 81.6 112 45.5
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 2.5e-13 79.3 46 78.3
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 7.2e-13 77.8 131 38.9
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.0e-11 73.9 47 68.1
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 3.9e-11 72.0 47 72.3
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.3e-06 57.0 84 41.7
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 3.8e-06 55.5 59 50.8
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 8.5e-06 54.3 39 66.7


User provided reference genes

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