Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 5.0e-132 474.6 259 100.0
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 2.3e-84 316.2 260 73.8
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 6.2e-82 308.1 260 70.4
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 5.1e-76 288.5 251 70.9
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 3.5e-69 265.8 208 71.6
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.3e-63 247.3 241 61.4
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 2.5e-62 243.0 229 62.9
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 2.5e-62 243.0 228 62.7
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 9.3e-62 241.1 252 59.1
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 9.3e-62 241.1 229 62.4
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 4.6e-61 238.8 213 63.4
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 5.1e-60 235.3 228 62.3
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 8.7e-60 234.6 228 62.3
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.5e-59 233.8 220 62.7
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.5e-59 233.0 253 55.3
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 5.7e-59 231.9 252 57.5
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 9.7e-59 231.1 217 63.1
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.8e-58 229.6 255 55.3
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 8.2e-58 228.0 218 58.7
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 5.3e-57 225.3 220 61.8
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 9.0e-57 224.6 210 61.4
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.5e-56 223.8 234 57.7
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 2.0e-56 223.4 211 59.7
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 2.0e-56 223.4 261 57.1
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 2.6e-56 223.0 233 57.5
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 3.4e-56 222.6 263 53.6
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 3.4e-56 222.6 223 57.4
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 7.7e-56 221.5 218 57.8
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 7.7e-56 221.5 196 66.3
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.4e-54 217.2 231 56.7
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.9e-54 216.9 238 60.9
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.9e-54 216.9 214 60.7
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 2.5e-54 216.5 234 59.8
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 2.5e-54 216.5 228 57.0
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.2e-54 216.1 222 58.1
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.2e-54 216.1 222 59.0
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 3.2e-54 216.1 234 59.8
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 4.2e-54 215.7 234 59.0
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 4.2e-54 215.7 236 56.4
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 7.2e-54 214.9 235 56.2
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 1.6e-53 213.8 216 60.2
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 3.6e-53 212.6 213 56.8
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 3.6e-53 212.6 213 56.8
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 3.6e-53 212.6 213 56.8
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 6.1e-53 211.8 206 59.2
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 6.1e-53 211.8 232 56.9
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 1.0e-52 211.1 228 57.5
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.0e-52 211.1 221 57.0
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.0e-52 211.1 183 64.5
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.8e-52 210.3 215 57.7
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 3.9e-52 209.1 258 53.1
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 5.1e-52 208.8 217 58.5
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 6.7e-52 208.4 185 64.3
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 2.0e-51 206.8 247 52.2
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 5.7e-51 205.3 216 58.3
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 7.4e-51 204.9 222 56.8
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.3e-50 204.1 180 60.6
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.7e-50 203.8 235 55.3
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.7e-50 203.8 265 49.4
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 2.8e-50 203.0 215 54.9
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 4.8e-50 202.2 226 54.4
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 8.2e-50 201.4 229 55.0
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 1.4e-49 200.7 238 53.4
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.4e-49 200.7 247 50.6
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 1.5e-48 197.2 222 56.3
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 2.0e-48 196.8 227 51.5
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 4.5e-48 195.7 241 51.5
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 5.9e-48 195.3 223 54.7
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 2.2e-47 193.4 234 53.0
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 3.8e-47 192.6 226 51.8
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 5.0e-47 192.2 184 58.7
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.9e-46 190.3 261 48.3
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 1.6e-45 187.2 223 52.0
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 2.7e-45 186.4 242 49.2
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 6.1e-45 185.3 219 51.6
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 7.9e-45 184.9 263 49.4
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 5.1e-44 182.2 260 47.7
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 6.7e-44 181.8 222 51.8
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-43 181.0 189 55.0
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-43 181.0 232 49.6
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.1e-43 181.0 232 49.6
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 2.6e-43 179.9 230 48.7
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 4.4e-43 179.1 253 45.8
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 4.4e-43 179.1 189 54.5
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 4.4e-43 179.1 189 54.5
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 7.4e-43 178.3 227 48.9
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.3e-42 177.6 233 48.9
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.7e-42 177.2 260 48.8
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.7e-42 177.2 235 48.5
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 4.8e-42 175.6 247 49.0
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 4.8e-42 175.6 215 52.1
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 4.8e-42 175.6 215 49.3
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 6.3e-42 175.3 221 50.7
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 1.4e-41 174.1 232 48.3
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.8e-41 173.7 177 54.8
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.4e-41 173.3 207 48.8
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 3.1e-41 172.9 196 52.0
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 3.1e-41 172.9 235 48.5
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 7.0e-41 171.8 218 50.9
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 7.0e-41 171.8 226 48.7
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 2.0e-40 170.2 176 54.5
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 2.6e-40 169.9 182 52.7
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 4.5e-40 169.1 214 49.5
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 5.9e-40 168.7 229 51.1
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.3e-39 167.5 261 45.2
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 1.3e-39 167.5 179 56.4
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.2e-39 166.8 249 45.0
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 2.2e-39 166.8 204 47.5
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 6.5e-39 165.2 288 42.0
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 4.2e-38 162.5 169 53.3
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 5.5e-38 162.2 248 46.8
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.6e-37 160.6 242 43.8
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 3.6e-37 159.5 251 43.0
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.8e-36 157.1 174 52.9
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 5.2e-36 155.6 144 59.0
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 7.4e-35 151.8 224 44.2
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 1.7e-34 150.6 118 65.3
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 2.2e-34 150.2 146 58.9
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 3.1e-33 146.4 188 49.5
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 7.0e-33 145.2 177 48.6
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.2e-32 144.4 205 47.3
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 1.2e-32 144.4 150 54.7
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 7.7e-32 141.7 168 47.6
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 2.9e-31 139.8 185 47.0
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 3.8e-31 139.4 214 43.9
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 1.2e-29 134.4 136 54.4
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 6.1e-29 132.1 141 53.9
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 6.3e-26 122.1 232 41.4
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 5.9e-24 115.5 220 39.1
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 5.0e-23 112.5 134 53.0
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 3.2e-22 109.8 126 52.4
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 1.4e-20 104.4 104 52.9
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 1.1e-17 94.7 223 32.7
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 1.4e-17 94.4 188 36.2
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 5.4e-17 92.4 108 51.9
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.0e-15 88.2 102 54.9
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 1.0e-15 88.2 66 63.6
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 7.2e-14 82.0 103 49.5
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 2.8e-13 80.1 111 48.6
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 5.2e-12 75.9 179 31.3
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 6.8e-12 75.5 162 33.3
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 9.8e-11 71.6 62 59.7
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.3e-10 71.2 240 32.1
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 1.4e-09 67.8 219 32.9
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 2.7e-08 63.5 225 28.0
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 1.3e-07 61.2 66 53.0
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 6.6e-07 58.9 207 30.0


User provided reference genes

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