Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.1e-237 826.2 405 100.0
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.2e-47 194.9 148 69.6
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.2e-20 105.1 103 54.4
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.2e-20 105.1 103 56.3
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.1e-20 104.4 64 79.7
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.8e-20 104.0 51 92.2
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 4.7e-20 103.2 62 80.6
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 6.2e-20 102.8 103 54.4
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 6.2e-20 102.8 51 90.2
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 6.2e-20 102.8 103 55.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 8.1e-20 102.4 51 88.2
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 8.1e-20 102.4 89 58.4
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 8.1e-20 102.4 51 90.2
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.4e-19 101.7 63 76.2
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.4e-19 101.7 64 75.0
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.4e-19 101.7 51 88.2
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.4e-19 101.7 56 80.4
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.8e-19 101.3 51 88.2
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.8e-19 101.3 56 80.4
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.8e-19 101.3 56 80.4
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.8e-19 101.3 51 88.2
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.8e-19 101.3 56 80.4
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.4e-19 100.9 56 80.4
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.4e-19 100.9 56 80.4
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.1e-19 100.5 56 80.4
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.1e-19 100.5 56 80.4
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 3.1e-19 100.5 62 77.4
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 3.1e-19 100.5 62 77.4
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 4.0e-19 100.1 74 63.5
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 4.0e-19 100.1 89 56.2
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 4.0e-19 100.1 108 51.9
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.0e-19 100.1 108 51.9
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.0e-19 100.1 51 86.3
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 4.0e-19 100.1 51 86.3
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 4.0e-19 100.1 51 86.3
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 4.0e-19 100.1 51 86.3
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 4.0e-19 100.1 51 86.3
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 4.0e-19 100.1 51 86.3
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 4.0e-19 100.1 51 86.3
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 6.9e-19 99.4 53 81.1
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 6.9e-19 99.4 51 86.3
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 6.9e-19 99.4 60 75.0
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 6.9e-19 99.4 51 84.3
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 6.9e-19 99.4 51 84.3
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 6.9e-19 99.4 51 86.3
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.2e-18 98.6 108 50.9
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.2e-18 98.6 108 50.9
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-18 98.6 108 50.9
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-18 98.6 108 50.9
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.2e-18 98.6 108 50.9
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.2e-18 98.6 108 50.9
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.2e-18 98.6 51 84.3
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.2e-18 98.6 51 82.4
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.2e-18 98.6 108 50.9
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.2e-18 98.6 51 84.3
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-18 98.2 108 50.9
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-18 98.2 108 50.9
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.5e-18 98.2 108 50.9
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.5e-18 98.2 108 50.9
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 82.4
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 82.4
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.5e-18 98.2 53 81.1
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 1.5e-18 98.2 53 81.1
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 82.4
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.5e-18 98.2 51 84.3
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 2.0e-18 97.8 51 84.3
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.0e-18 97.8 51 84.3
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.0e-18 97.8 51 84.3
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.0e-18 97.8 51 84.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 2.0e-18 97.8 51 84.3
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 2.6e-18 97.4 51 82.4
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 2.6e-18 97.4 108 50.0
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 3.4e-18 97.1 51 82.4
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 4.4e-18 96.7 51 82.4
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 4.4e-18 96.7 51 84.3
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 4.4e-18 96.7 51 84.3
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 4.4e-18 96.7 51 84.3
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 4.4e-18 96.7 51 84.3
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 4.4e-18 96.7 51 84.3
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 4.4e-18 96.7 51 82.4
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 4.4e-18 96.7 51 82.4
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 9.9e-18 95.5 103 51.5
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.7e-17 94.7 53 77.4
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.2e-17 94.4 51 78.4
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.9e-17 94.0 51 82.4
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 4.9e-17 93.2 51 78.4
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 6.4e-17 92.8 51 80.4
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 6.4e-17 92.8 51 80.4
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 6.4e-17 92.8 51 76.5
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 8.4e-17 92.4 51 80.4
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.4e-16 91.7 64 65.6
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 2.4e-16 90.9 51 78.4
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 3.2e-16 90.5 50 86.0
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 4.2e-16 90.1 51 76.5
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 5.4e-16 89.7 103 43.7
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 9.3e-16 89.0 51 72.5
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.6e-15 86.7 52 71.2
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 7.8e-15 85.9 52 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 3.0e-14 84.0 51 72.5
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 3.0e-14 84.0 52 67.3
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 5.1e-14 83.2 89 47.2
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 6.6e-14 82.8 52 65.4
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 6.6e-14 82.8 51 74.5
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 8.7e-14 82.4 51 70.6
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-13 82.0 51 70.6
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.5e-13 80.9 50 64.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 3.3e-13 80.5 94 47.9
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 4.3e-13 80.1 98 43.9
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.2e-12 76.3 51 64.7
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.4e-11 75.1 49 59.2
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.8e-11 74.7 35 88.6
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 3.1e-11 73.9 128 35.9
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.1e-11 73.9 51 64.7
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 4.0e-11 73.6 49 57.1
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 9.0e-11 72.4 53 60.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.0e-10 71.2 35 82.9
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.3e-09 68.6 51 52.9
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 3.8e-09 67.0 60 53.3
SGA_v2.0_scaffold1G00590 Striga asiatica HOM05D002468 ORTHO05D406130 3.5e-07 60.5 149 36.2
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 7.9e-07 59.3 53 56.6


User provided reference genes

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