Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 5.3e-108 394.4 209 100.0
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 7.7e-83 310.8 206 82.0
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.6e-80 303.1 213 79.3
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.6e-78 295.8 208 76.9
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 3.4e-78 295.4 201 77.6
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 3.4e-78 295.4 200 78.5
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.4e-78 295.4 206 78.2
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 4.4e-78 295.0 212 79.7
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 5.7e-78 294.7 206 76.7
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 9.8e-78 293.9 206 76.7
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 9.8e-78 293.9 206 76.7
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.7e-77 293.1 201 77.6
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 2.2e-77 292.7 208 75.5
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 2.2e-77 292.7 204 76.5
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 2.8e-77 292.4 203 78.8
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 2.8e-77 292.4 206 76.7
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.7e-77 292.0 196 79.1
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 4.9e-77 291.6 208 76.4
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 4.9e-77 291.6 208 76.4
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 6.3e-77 291.2 208 75.5
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.3e-77 291.2 200 78.0
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 8.3e-77 290.8 208 75.5
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.4e-76 290.0 201 77.6
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.4e-76 290.0 205 75.6
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.8e-76 289.7 208 76.0
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.4e-76 289.3 204 75.5
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.1e-76 288.9 203 75.4
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 3.1e-76 288.9 207 75.8
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 5.4e-76 288.1 205 74.6
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 5.4e-76 288.1 206 73.8
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 7.0e-76 287.7 205 74.6
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 7.0e-76 287.7 202 75.7
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.2e-75 287.0 205 75.1
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 2.0e-75 286.2 200 75.5
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.0e-75 286.2 208 75.0
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 2.7e-75 285.8 207 74.9
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 4.5e-75 285.0 205 74.6
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.5e-75 285.0 203 74.9
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.5e-75 285.0 203 74.9
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 5.9e-75 284.6 202 74.8
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 5.9e-75 284.6 202 75.2
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 5.9e-75 284.6 205 75.1
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 7.8e-75 284.3 205 74.6
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.0e-74 283.9 204 74.5
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.3e-74 283.5 205 73.2
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.3e-74 283.5 196 77.0
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 2.3e-74 282.7 208 73.6
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.9e-74 282.3 209 74.2
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.9e-74 282.3 206 72.8
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.9e-74 282.3 209 73.2
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.9e-74 282.0 205 73.7
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 5.0e-74 281.6 199 75.4
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 5.0e-74 281.6 205 73.7
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 5.0e-74 281.6 204 75.5
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 6.6e-74 281.2 204 72.5
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 6.6e-74 281.2 207 74.4
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 6.6e-74 281.2 205 73.7
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 8.6e-74 280.8 207 72.5
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 8.6e-74 280.8 204 73.0
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.1e-73 280.4 205 73.7
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.5e-73 280.0 204 73.0
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-73 279.6 207 72.5
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-73 279.6 207 72.5
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.5e-73 279.3 206 73.3
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.5e-73 279.3 207 72.5
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 3.3e-73 278.9 204 72.1
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.6e-73 278.1 200 75.5
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 5.6e-73 278.1 201 73.1
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 5.6e-73 278.1 206 71.8
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 7.3e-73 277.7 204 72.1
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 7.3e-73 277.7 205 71.2
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.2e-72 276.9 204 72.1
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.2e-72 276.9 210 71.4
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.6e-72 276.6 207 72.5
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.1e-72 276.2 199 73.9
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 2.8e-72 275.8 204 71.6
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 2.8e-72 275.8 197 75.6
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 2.8e-72 275.8 202 72.3
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 2.8e-72 275.8 249 64.7
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 4.7e-72 275.0 214 70.1
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 4.7e-72 275.0 206 73.3
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 8.0e-72 274.2 201 72.1
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 1.0e-71 273.9 205 72.7
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 1.0e-71 273.9 204 70.6
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.0e-71 273.9 207 70.0
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.8e-71 273.1 183 81.4
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.8e-71 273.1 204 71.1
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.8e-71 273.1 204 71.1
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 2.3e-71 272.7 206 72.8
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.3e-71 272.7 204 71.1
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 3.1e-71 272.3 202 71.3
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 5.2e-71 271.6 205 70.2
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 8.9e-71 270.8 201 71.6
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 2.0e-70 269.6 201 70.6
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 2.6e-70 269.2 200 71.0
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 3.4e-70 268.9 200 71.0
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 3.4e-70 268.9 204 70.1
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 3.4e-70 268.9 204 70.1
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 3.4e-70 268.9 200 71.0
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 3.4e-70 268.9 204 70.1
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 3.4e-70 268.9 204 70.1
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 5.8e-70 268.1 203 70.0
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 7.5e-70 267.7 200 71.0
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 7.5e-70 267.7 200 72.0
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.9e-69 265.8 214 68.7
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 4.1e-68 261.9 177 79.7
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.6e-67 260.0 243 61.7
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 4.6e-67 258.5 204 69.6
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.3e-66 256.1 252 59.5
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.9e-66 255.4 251 59.8
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.6e-64 248.8 205 68.3
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 8.9e-63 244.2 182 72.0
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 5.8e-62 241.5 260 54.6
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 8.3e-61 237.7 205 63.9
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 3.5e-59 232.3 199 60.8
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 3.0e-58 229.2 167 74.3
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 3.0e-58 229.2 204 62.3
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.3e-57 225.3 200 63.5
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 4.7e-56 221.9 158 75.9
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 2.3e-55 219.5 199 59.3
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 4.0e-55 218.8 163 71.8
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 6.8e-55 218.0 155 77.4
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.3e-53 213.8 158 72.8
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.2e-51 207.2 198 56.6
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.5e-49 200.3 199 52.3
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-49 199.1 147 73.5
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 9.5e-49 197.6 154 70.1
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 5.2e-47 191.8 156 67.9
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 6.8e-47 191.4 158 66.5
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.4e-46 189.1 147 69.4
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.1e-44 184.1 232 52.2
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.1e-44 184.1 133 74.4
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.4e-44 183.0 145 69.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.1e-42 175.3 104 82.7
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 6.9e-39 164.9 105 80.0
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.0e-39 164.5 132 68.9
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.6e-38 161.4 140 65.7
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-36 156.8 93 83.9
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-32 142.9 82 87.8
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 8.1e-32 141.4 121 67.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.7e-29 133.7 197 39.6
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.1e-28 131.0 125 60.0
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.2e-28 129.4 99 70.7
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 7.1e-28 128.3 108 66.7
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 1.2e-27 127.5 190 38.9
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 2.1e-27 126.7 108 66.7
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 2.3e-26 123.2 75 81.3
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 3.9e-26 122.5 200 37.0
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 2.5e-25 119.8 85 67.1
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 9.6e-25 117.9 127 56.7
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.3e-24 117.5 101 66.3
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 8.1e-24 114.8 193 34.7
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.1e-19 100.1 62 80.6
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.0e-15 85.9 59 72.9
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.8e-13 79.3 111 48.6
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.5e-13 78.6 114 49.1
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.5e-13 78.6 114 49.1
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.5e-12 76.6 114 48.2
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.2e-12 76.3 114 48.2
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.0e-10 71.2 70 58.6
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 8.7e-10 68.2 60 61.7
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.3e-08 64.3 107 43.0
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.2e-08 63.5 36 86.1
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 1.0e-05 54.7 53 58.5


User provided reference genes

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