Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 3.1e-99 365.2 190 100.0
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.6e-63 246.5 148 86.5
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.1e-62 243.8 143 87.4
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.2e-61 240.4 148 84.5
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.2e-61 240.4 148 84.5
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 6.4e-60 234.6 146 82.9
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.4e-59 232.6 150 78.7
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 7.1e-59 231.1 151 78.8
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 7.1e-59 231.1 151 78.8
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 9.3e-59 230.7 145 81.4
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.2e-58 230.3 148 81.1
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.6e-58 229.9 145 84.1
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 2.1e-58 229.6 144 80.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 2.7e-58 229.2 148 81.1
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 3.5e-58 228.8 149 80.5
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 3.5e-58 228.8 148 81.1
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 3.5e-58 228.8 141 82.3
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 3.5e-58 228.8 143 83.2
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 4.6e-58 228.4 148 79.7
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 6.0e-58 228.0 145 81.4
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 7.8e-58 227.6 145 80.7
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.0e-57 227.3 148 79.7
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.0e-57 227.3 147 82.3
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.3e-57 226.9 147 79.6
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.7e-57 226.5 144 81.9
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.7e-57 226.5 152 78.3
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.0e-57 225.7 141 81.6
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 3.9e-57 225.3 141 81.6
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 5.1e-57 224.9 145 78.6
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 6.6e-57 224.6 144 79.9
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 8.7e-57 224.2 144 79.2
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.1e-56 223.8 147 78.2
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 1.1e-56 223.8 146 77.4
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.1e-56 223.8 141 81.6
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.9e-56 223.0 141 80.9
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.9e-56 223.0 141 80.9
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.9e-56 223.0 135 86.7
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.9e-56 223.0 144 79.2
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.3e-56 222.2 139 82.0
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 3.3e-56 222.2 143 79.0
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 3.3e-56 222.2 148 77.0
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 3.3e-56 222.2 148 77.0
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.3e-56 221.9 146 78.8
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 5.6e-56 221.5 144 77.8
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 7.3e-56 221.1 146 78.8
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 7.3e-56 221.1 146 78.1
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 7.3e-56 221.1 141 78.0
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 9.6e-56 220.7 142 79.6
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 9.6e-56 220.7 148 76.4
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 9.6e-56 220.7 147 74.8
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 1.3e-55 220.3 148 78.4
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.3e-55 220.3 147 77.6
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.6e-55 219.9 139 83.5
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 1.6e-55 219.9 144 79.2
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 2.1e-55 219.5 143 78.3
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 2.8e-55 219.2 148 77.7
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.8e-55 219.2 144 77.8
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 3.6e-55 218.8 143 81.1
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 3.6e-55 218.8 141 80.9
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 6.2e-55 218.0 147 76.2
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 6.2e-55 218.0 141 79.4
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 8.1e-55 217.6 141 78.7
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 8.1e-55 217.6 144 77.1
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 8.1e-55 217.6 141 78.0
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 8.1e-55 217.6 144 77.8
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 1.1e-54 217.2 141 79.4
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 1.1e-54 217.2 141 79.4
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.1e-54 217.2 143 76.2
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.8e-54 216.5 146 76.7
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.8e-54 216.5 142 78.9
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 2.4e-54 216.1 146 77.4
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.4e-54 216.1 141 79.4
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.4e-54 216.1 141 79.4
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 3.1e-54 215.7 147 75.5
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 3.1e-54 215.7 134 81.3
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 5.3e-54 214.9 141 78.7
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.3e-54 214.9 144 76.4
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 6.9e-54 214.5 153 74.5
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 6.9e-54 214.5 144 76.4
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 6.9e-54 214.5 144 76.4
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 9.0e-54 214.2 153 73.9
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 9.0e-54 214.2 141 78.7
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 9.0e-54 214.2 141 78.7
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 9.0e-54 214.2 141 78.0
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.2e-53 213.8 144 77.1
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.2e-53 213.8 144 77.8
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.5e-53 213.4 141 78.7
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.5e-53 213.4 147 77.6
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.5e-53 213.4 149 72.5
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 2.0e-53 213.0 138 78.3
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 2.6e-53 212.6 138 78.3
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 3.4e-53 212.2 141 78.0
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 4.4e-53 211.8 140 79.3
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 5.8e-53 211.5 140 79.3
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 5.8e-53 211.5 146 77.4
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 5.8e-53 211.5 144 74.3
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 2.2e-52 209.5 140 77.1
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 2.9e-52 209.1 145 74.5
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.4e-51 206.8 138 76.1
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 1.4e-51 206.8 143 75.5
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.9e-51 206.5 142 75.4
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 5.4e-51 204.9 136 77.9
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.2e-50 203.8 142 75.4
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 2.3e-49 199.5 144 71.5
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 5.1e-49 198.4 150 68.0
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 6.6e-49 198.0 140 72.9
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.1e-48 197.2 140 72.9
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 3.3e-48 195.7 137 73.7
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 3.3e-48 195.7 140 72.1
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 3.3e-48 195.7 143 74.1
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 7.3e-48 194.5 139 70.5
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 1.3e-47 193.7 143 70.6
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.6e-47 193.4 125 82.4
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.8e-47 192.6 140 72.9
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.8e-47 192.6 140 72.9
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.8e-47 192.6 140 72.9
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 4.8e-47 191.8 142 71.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 4.8e-47 191.8 141 71.6
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 190.3 142 70.4
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 190.3 140 71.4
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.8e-46 189.9 148 66.2
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 5.3e-46 188.3 143 69.9
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 9.0e-46 187.6 134 72.4
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 7.6e-45 184.5 147 68.0
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.7e-44 183.3 118 79.7
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 2.2e-44 183.0 148 68.2
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 3.8e-44 182.2 148 68.2
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 3.8e-44 182.2 143 69.2
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 4.9e-44 181.8 118 79.7
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 5.5e-43 178.3 145 64.8
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 3.5e-42 175.6 143 67.1
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.3e-40 169.1 137 61.3
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 7.4e-40 167.9 143 64.3
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 1.1e-38 164.1 147 60.5
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.9e-35 153.3 139 60.4
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 5.5e-35 151.8 142 56.3
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 9.3e-35 151.0 132 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.8e-31 138.7 107 61.7
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.0e-29 133.3 140 53.6
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 3.9e-25 119.0 109 63.3
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.3e-24 115.5 91 64.8
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 1.3e-23 114.0 135 43.7
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 2.2e-23 113.2 104 61.5
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 2.5e-19 99.8 142 40.8
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.8e-14 83.6 87 52.9
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 2.6e-13 79.7 46 82.6


User provided reference genes

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