Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 0.0e+00 1241.1 693 100.0
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.5e-268 929.5 697 75.5
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 9.9e-260 900.2 701 74.6
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.1e-226 790.4 697 65.7
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.2e-225 786.9 692 65.8
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 9.1e-221 770.8 693 65.8
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.1e-218 763.8 700 65.4
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.5e-218 762.7 700 65.3
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.8e-213 746.5 696 62.6
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 5.3e-213 745.0 701 63.3
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 9.1e-213 744.2 681 65.1
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.5e-212 743.4 699 62.4
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.2e-211 739.6 660 65.8
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.9e-211 739.2 697 62.1
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.0e-211 738.4 703 61.6
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 5.5e-210 734.9 690 64.6
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 4.7e-209 731.9 698 61.7
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.7e-209 731.9 753 57.6
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 8.0e-209 731.1 702 62.1
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 2.3e-208 729.6 697 62.4
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 2.3e-208 729.6 697 62.4
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 3.0e-208 729.2 720 61.2
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 3.0e-208 729.2 700 61.1
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 6.7e-208 728.0 635 66.3
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 7.4e-207 724.5 695 62.4
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.7e-206 723.4 694 61.2
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 2.2e-206 723.0 698 60.6
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 2.2e-206 723.0 700 61.3
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 6.3e-206 721.5 730 56.8
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 8.2e-206 721.1 696 60.8
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 3.1e-205 719.2 699 60.7
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 7.7e-204 714.5 692 61.7
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 8.5e-203 711.1 814 56.4
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 9.4e-202 707.6 664 63.4
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.2e-201 707.2 702 60.4
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.6e-201 706.8 700 61.0
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 8.0e-201 704.5 695 61.3
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.0e-200 702.2 706 59.9
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 7.5e-199 698.0 692 60.5
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 2.2e-198 696.4 698 60.7
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.2e-196 690.6 688 60.2
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 5.9e-196 688.3 702 60.5
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.2e-195 686.4 706 60.2
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.8e-195 685.6 700 59.6
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 5.0e-195 685.3 700 59.7
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 4.2e-194 682.2 698 59.7
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.2e-193 680.6 692 60.1
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.6e-193 680.2 758 55.7
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 6.1e-193 678.3 654 62.1
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.4e-192 677.2 699 60.4
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.4e-192 677.2 698 59.5
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 6.8e-192 674.9 699 60.2
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.3e-190 670.6 705 59.3
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 8.3e-190 667.9 665 59.7
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.1e-189 667.5 682 59.7
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 7.0e-189 664.8 695 57.0
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.3e-187 659.8 699 56.7
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 8.6e-187 657.9 595 64.0
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 8.0e-185 651.4 564 67.4
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.0e-184 651.0 667 59.5
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 6.8e-184 648.3 695 58.4
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.1e-181 641.0 631 60.5
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.4e-181 640.6 691 57.6
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 7.8e-180 634.8 560 66.2
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 1.0e-179 634.4 697 57.7
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.3e-179 634.0 694 55.3
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.7e-179 633.6 678 57.5
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 2.9e-179 632.9 699 56.8
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 5.0e-179 632.1 545 67.7
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 8.6e-179 631.3 683 57.5
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 4.3e-178 629.0 679 59.5
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 4.0e-176 622.5 681 57.3
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.2e-175 620.9 703 52.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.6e-175 619.8 693 55.8
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 4.4e-175 619.0 712 54.9
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 7.5e-175 618.2 696 55.5
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 7.5e-175 618.2 696 55.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 7.5e-175 618.2 483 73.3
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 2.2e-174 616.7 698 56.4
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 6.4e-174 615.1 647 57.5
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 8.3e-174 614.8 694 55.0
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 8.3e-174 614.8 694 55.0
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 8.3e-174 614.8 692 56.9
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 2.4e-173 613.2 696 54.9
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.4e-173 613.2 694 54.9
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 2.4e-173 613.2 696 54.9
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.4e-173 613.2 581 62.5
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.6e-172 610.5 694 55.0
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 2.8e-169 599.7 698 54.3
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.5e-167 594.0 495 68.9
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 3.7e-166 589.3 698 51.7
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 2.1e-164 583.6 699 51.1
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.1e-162 577.8 528 63.3
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.9e-157 560.5 639 56.7
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.3e-147 527.7 680 52.6
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.1e-146 524.6 584 52.9
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.3e-145 521.2 635 52.6
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.3e-145 521.2 707 48.5
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.4e-144 517.7 629 51.7
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 2.4e-141 506.9 716 48.3
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 5.6e-138 495.7 469 57.6
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 5.4e-133 479.2 700 46.7
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.3e-131 473.8 644 47.4
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 6.7e-131 472.2 696 44.4
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.2e-127 461.5 744 41.9
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.7e-122 442.6 440 62.5
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.3e-121 441.4 680 45.3
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 2.9e-110 403.7 453 56.1
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 2.7e-108 397.1 580 44.7
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 7.7e-103 379.0 591 43.0
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 6.5e-102 375.9 696 40.1
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 8.2e-97 359.0 503 48.5
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.4e-91 341.7 554 41.5
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 7.7e-87 325.9 695 36.8
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 8.0e-84 315.8 334 64.1
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 4.7e-76 290.0 565 38.1
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.6e-68 265.0 275 67.3
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 3.5e-55 220.7 323 42.4
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.6e-55 220.3 332 40.4
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 3.0e-54 217.6 333 53.5
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.3e-53 213.8 293 45.7
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.2e-48 197.6 181 68.5
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.3e-45 187.6 200 48.5
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 2.8e-44 184.5 300 47.0
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.1e-43 182.6 160 65.0
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 8.9e-43 179.5 245 60.4
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.4e-42 177.6 286 36.7
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 7.8e-39 166.4 134 81.3
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 7.1e-32 143.3 316 45.3
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 7.1e-32 143.3 83 79.5
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.8e-27 128.6 222 35.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.2e-25 121.7 265 40.0
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 4.2e-24 117.5 166 38.0
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 4.2e-24 117.5 104 66.3
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 1.5e-18 99.0 51 98.0
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.7e-17 95.5 59 74.6
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.4e-16 92.4 247 30.8
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 5.5e-16 90.5 63 63.5
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 7.9e-15 86.7 115 41.7
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 7.9e-15 86.7 115 41.7
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.3e-14 85.9 311 24.4
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 3.3e-13 81.3 88 58.0
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.7e-12 77.8 75 61.3
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 5.8e-10 70.5 72 48.6
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 7.6e-10 70.1 53 58.5
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.4e-08 65.9 121 33.1
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 7.9e-07 60.1 36 83.3
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.0e-06 59.7 127 39.4
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-06 58.9 34 85.3
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.1e-06 57.4 59 49.2
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.1e-06 57.4 59 49.2


User provided reference genes

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