Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 0.0e+00 1167.9 592 100.0
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 1.9e-299 1031.9 615 87.3
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 1.9e-275 952.2 569 83.3
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 6.5e-268 927.2 574 81.9
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 7.9e-266 920.2 599 78.1
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 5.1e-265 917.5 590 78.8
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.2e-261 906.4 571 78.5
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.5e-261 906.0 570 79.5
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 2.6e-261 905.2 570 78.6
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 3.8e-260 901.4 576 77.3
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.1e-259 899.8 570 80.0
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.1e-259 899.8 574 77.9
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 1.1e-259 899.8 568 78.7
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.2e-259 898.3 569 78.9
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 4.2e-259 897.9 593 78.4
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 7.2e-259 897.1 567 79.5
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 1.2e-258 896.3 597 74.5
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 1.6e-258 896.0 569 79.4
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 2.7e-258 895.2 570 77.5
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 3.6e-258 894.8 597 74.5
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.0e-257 893.3 569 78.0
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.4e-257 892.9 569 78.6
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 3.0e-257 891.7 577 78.5
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.9e-257 891.3 569 78.4
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 1.1e-256 889.8 569 77.3
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 3.3e-256 888.3 569 77.3
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 7.4e-256 887.1 570 76.5
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.7e-256 886.7 568 77.6
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 9.7e-256 886.7 568 77.6
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 9.7e-256 886.7 569 78.0
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 9.7e-256 886.7 604 73.5
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.7e-255 885.9 568 77.6
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.2e-255 885.6 569 78.0
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 2.8e-255 885.2 574 76.8
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 8.2e-255 883.6 600 76.7
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.1e-254 881.7 575 76.9
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 5.3e-254 880.9 571 77.4
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 9.1e-254 880.2 569 77.0
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.0e-253 879.0 576 77.1
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 5.9e-253 877.5 569 77.5
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 2.9e-252 875.2 569 77.3
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 5.0e-252 874.4 568 77.3
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 6.5e-252 874.0 569 77.3
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 8.5e-252 873.6 570 77.2
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 5.5e-251 870.9 578 75.8
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 9.4e-251 870.2 579 77.4
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 1.6e-250 869.4 567 76.9
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 3.6e-250 868.2 576 76.0
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 3.6e-250 868.2 570 75.6
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 7.9e-250 867.1 570 75.6
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 1.0e-249 866.7 566 77.0
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.4e-249 866.3 570 75.4
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.4e-249 866.3 571 76.5
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 6.7e-249 864.0 599 74.6
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 2.0e-248 862.4 547 78.2
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 2.6e-248 862.1 570 75.1
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 2.6e-248 862.1 573 75.7
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 3.3e-248 861.7 601 73.4
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 5.7e-248 860.9 575 74.3
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 5.7e-248 860.9 570 74.2
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 5.7e-248 860.9 563 76.2
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 7.4e-248 860.5 571 76.5
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 9.7e-248 860.1 567 73.7
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 9.7e-248 860.1 570 74.4
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 9.7e-248 860.1 569 74.9
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 9.7e-248 860.1 601 73.0
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.3e-247 859.8 620 71.1
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.3e-247 859.8 596 72.1
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.7e-247 859.4 603 72.5
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 3.7e-247 858.2 574 74.0
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.7e-247 858.2 620 71.0
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 4.8e-247 857.8 576 74.5
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 6.3e-247 857.4 589 72.8
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 8.2e-247 857.1 579 74.8
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 8.2e-247 857.1 570 74.2
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.1e-246 856.7 569 74.7
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 1.4e-246 856.3 574 74.2
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.4e-246 856.3 574 74.6
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.4e-246 856.3 570 74.7
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 1.8e-246 855.9 569 75.0
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 2.4e-246 855.5 570 73.9
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 2.4e-246 855.5 571 76.4
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 3.1e-246 855.1 570 73.9
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 9.1e-246 853.6 573 73.6
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.2e-245 853.2 570 74.2
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 1.5e-245 852.8 570 74.0
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 1.5e-245 852.8 570 73.9
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 2.0e-245 852.4 600 71.0
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.0e-245 852.4 620 70.6
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 2.6e-245 852.0 570 73.7
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.4e-245 851.7 620 70.6
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 4.5e-245 851.3 574 74.2
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 5.9e-245 850.9 570 73.9
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 5.9e-245 850.9 573 73.5
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 7.7e-245 850.5 585 73.8
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.0e-244 850.1 570 74.2
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.7e-244 849.4 574 73.2
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 2.2e-244 849.0 570 74.0
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 3.8e-244 848.2 575 73.7
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 6.5e-244 847.4 574 74.4
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.1e-243 846.7 570 74.0
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.1e-243 846.7 570 73.9
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.1e-243 846.7 574 74.4
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 2.5e-243 845.5 598 71.4
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 5.5e-243 844.3 562 76.0
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 1.6e-242 842.8 578 73.5
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 2.7e-242 842.0 586 75.4
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 4.7e-242 841.3 538 77.3
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 4.7e-242 841.3 602 72.3
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.8e-241 839.3 595 71.6
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.8e-241 839.3 605 71.6
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.6e-240 835.5 571 72.2
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 2.6e-240 835.5 699 63.7
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 2.2e-239 832.4 519 79.2
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 2.0e-237 825.9 577 71.2
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 3.8e-236 821.6 588 71.9
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.0e-232 809.3 532 76.3
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 7.5e-232 807.4 522 76.8
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 4.5e-229 798.1 599 69.6
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 7.7e-229 797.3 575 70.8
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 5.7e-224 781.2 558 69.0
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 6.3e-223 777.7 499 79.0
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 2.9e-220 768.8 564 67.7
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 2.8e-218 762.3 903 49.4
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.8e-214 749.6 864 50.0
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.7e-199 699.9 575 62.4
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 7.3e-195 684.5 569 64.0
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 5.4e-190 668.3 510 67.1
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.2e-190 667.5 569 62.9
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 1.1e-185 654.1 403 80.9
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.9e-179 633.3 563 57.4
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 6.6e-172 608.2 429 70.9
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 6.9e-169 598.2 335 87.8
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.8e-156 557.0 455 66.2
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.3e-148 530.8 409 68.7
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.4e-144 516.2 309 82.2
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 1.6e-141 507.3 581 47.7
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.9e-135 486.5 445 62.0
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 5.2e-108 396.0 331 58.3
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 7.8e-96 355.5 413 45.5
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.9e-90 337.0 568 36.3
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.4e-89 334.0 480 40.8
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 5.0e-87 326.2 188 85.1
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 8.1e-85 318.9 226 70.4
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.2e-82 310.8 243 71.2
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.2e-82 310.8 243 71.2
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 9.5e-78 295.4 198 71.2
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 6.8e-76 289.3 620 32.3
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.4e-65 254.2 377 37.4
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.2e-65 253.8 158 78.5
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.3e-62 243.8 213 62.0
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.1e-60 237.3 151 76.2
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 6.2e-45 186.4 111 84.7
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 3.9e-39 167.2 230 47.0
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 6.7e-31 139.8 72 91.7
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 4.5e-27 127.1 111 59.5
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 3.6e-24 117.5 74 74.3
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 6.1e-24 116.7 72 75.0
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.2e-18 98.2 107 56.1
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 7.9e-16 89.7 44 88.6
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 5.3e-12 77.0 52 63.5
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 5.3e-12 77.0 52 63.5
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 2.9e-10 71.2 49 65.3
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 6.5e-10 70.1 64 53.1
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 1.1e-06 59.3 46 58.7


User provided reference genes

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