Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18800 Striga asiatica HOM05D000240 ORTHO05D401382 2.8e-132 475.3 248 100.0
SGA_v2.0_scaffold58G20477 Striga asiatica HOM05D000240 ORTHO05D001153 7.4e-24 115.2 258 41.9
SalBow6G2463 Salvia bowleyana HOM05D000240 ORTHO05D001153 1.4e-19 100.9 257 38.9
Migut.N01271 Erythranthe guttata HOM05D000240 ORTHO05D001153 2.5e-16 90.1 267 36.3
MSTRG.20054 Avicennia marina HOM05D000240 ORTHO05D001153 4.3e-16 89.4 259 39.8
Lsat_1_v5_gn_7_92061 Lactuca sativa HOM05D000240 ORTHO05D001153 4.3e-16 89.4 263 35.0
Hma1.2p1_0066F.1_g035890 Hydrangea macrophylla HOM05D000240 ORTHO05D001153 7.4e-16 88.6 261 36.4
MSTRG.16838 Avicennia marina HOM05D000240 ORTHO05D001153 9.7e-16 88.2 261 38.3
Solyc01g110190.4 Solanum lycopersicum HOM05D000240 ORTHO05D001153 1.7e-15 87.4 265 35.5
Actinidia27860 Actinidia chinensis HOM05D000240 ORTHO05D001153 2.2e-15 87.0 261 36.0
Migut.B00190 Erythranthe guttata HOM05D000240 ORTHO05D001153 4.8e-15 85.9 258 35.7
Sopen01g052350 Solanum pennellii HOM05D000240 ORTHO05D001153 8.2e-15 85.1 265 35.1
Lj5C191G7 Lonicera japonica HOM05D000240 ORTHO05D001153 1.1e-14 84.7 260 34.6
Prupe.8G087800 Prunus persica HOM05D000240 ORTHO05D001153 1.1e-14 84.7 262 37.4
Cc02_g17060 Coffea canephora HOM05D000240 ORTHO05D001153 1.8e-14 84.0 260 35.4
CANSAT11G1038 Cannabis sativa HOM05D000240 ORTHO05D001153 3.1e-14 83.2 259 35.9
Nitab4.5_0002723g0070 Nicotiana tabacum HOM05D000240 ORTHO05D001153 9.1e-14 81.6 262 35.5
MD05G1058100 Malus domestica HOM05D000240 ORTHO05D001153 1.2e-13 81.3 264 37.1
MD10G1065900 Malus domestica HOM05D000240 ORTHO05D001153 1.5e-13 80.9 264 37.1
PGR142G1203 Punica granatum HOM05D000240 ORTHO05D001153 2.0e-13 80.5 258 33.7
CAN.G170.85 Capsicum annuum HOM05D000240 ORTHO05D001153 3.4e-13 79.7 268 32.5
Nn6g32210 Nelumbo nucifera HOM05D000240 ORTHO05D001153 3.4e-13 79.7 264 35.6
MSTRG.5420 Avicennia marina HOM05D000240 ORTHO05D001153 5.9e-13 79.0 76 59.2
vmacro17435 Vaccinium macrocarpon HOM05D000240 ORTHO05D001153 7.7e-13 78.6 270 33.7
Haze_02306 Corylus avellana HOM05D000240 ORTHO05D001153 1.0e-12 78.2 261 36.0
Oeu008576.1 Olea europaea HOM05D000240 ORTHO05D001153 1.3e-12 77.8 76 55.3
DCAR_028950 Daucus carota HOM05D000240 ORTHO05D001153 2.2e-12 77.0 251 33.9
Cpa.g.sc150.41 Carica papaya HOM05D000240 ORTHO05D001153 2.9e-12 76.6 261 36.8
Nitab4.5_0011132g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 2.9e-12 76.6 265 33.2
EL10Ac9g21667 Beta vulgaris HOM05D000240 ORTHO05D001153 5.0e-12 75.9 67 58.2
CSS0018000 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001153 5.0e-12 75.9 263 36.1
CAN.G1.58 Capsicum annuum HOM05D000240 ORTHO05D001153 6.5e-12 75.5 269 32.0
Glyma.06G009000 Glycine max HOM05D000240 ORTHO05D001153 6.5e-12 75.5 122 37.7
Lj9C381G11 Lonicera japonica HOM05D000240 ORTHO05D001153 6.5e-12 75.5 262 35.5
Medtr3g117330 Medicago truncatula HOM05D000240 ORTHO05D001153 6.5e-12 75.5 121 39.7
Dinv23473 Davidia involucrata HOM05D000240 ORTHO05D001153 8.5e-12 75.1 130 37.7
Peaxi162Scf00016g00239 Petunia axillaris HOM05D000240 ORTHO05D001153 8.5e-12 75.1 117 39.3
RcHm_v2.0_Chr6g0267011 Rosa chinensis HOM05D000240 ORTHO05D001153 8.5e-12 75.1 261 37.2
THA.LOC104807759 Tarenaya hassleriana HOM05D000240 ORTHO05D001153 8.5e-12 75.1 265 35.8
TPR.G32177 Trifolium pratense HOM05D000240 ORTHO05D001153 8.5e-12 75.1 121 41.3
Eucgr.I01311 Eucalyptus grandis HOM05D000240 ORTHO05D001153 1.1e-11 74.7 261 35.6
FAN15G0690 Fragaria x ananassa HOM05D000240 ORTHO05D001153 1.4e-11 74.3 265 36.2
TAR628G1129 Trochodendron aralioides HOM05D000240 ORTHO05D001153 1.9e-11 73.9 262 34.0
Cfa005076 Carpinus fangiana HOM05D000240 ORTHO05D001153 2.5e-11 73.6 261 34.1
CiPaw.06G130700 Carya illinoinensis HOM05D000240 ORTHO05D001153 2.5e-11 73.6 260 36.5
AUR62010414 Chenopodium quinoa HOM05D000240 ORTHO05D001153 2.5e-11 73.6 83 47.0
AUR62016802 Chenopodium quinoa HOM05D000240 ORTHO05D001153 2.5e-11 73.6 83 47.0
MELO3C013429.2 Cucumis melo HOM05D000240 ORTHO05D001153 2.5e-11 73.6 263 33.8
Duzib052G0374 Durio zibethinus HOM05D000240 ORTHO05D001153 2.5e-11 73.6 260 35.0
QL11p045641 Quercus lobata HOM05D000240 ORTHO05D001153 2.5e-11 73.6 263 35.7
Sopen10g023930 Solanum pennellii HOM05D000240 ORTHO05D001153 2.5e-11 73.6 260 31.9
TAR376G0052 Trochodendron aralioides HOM05D000240 ORTHO05D001153 2.5e-11 73.6 271 33.6
COL.COLO4_26016 Corchorus olitorius HOM05D000240 ORTHO05D001153 4.2e-11 72.8 70 57.1
DCAR_003649 Daucus carota HOM05D000240 ORTHO05D001153 5.5e-11 72.4 252 32.1
THA.LOC104804119 Tarenaya hassleriana HOM05D000240 ORTHO05D001153 5.5e-11 72.4 265 35.5
TWI79G0940 Tripterygium wilfordii HOM05D000240 ORTHO05D001153 5.5e-11 72.4 258 33.3
arahy.Tifrunner.gnm1.ann1.DN52HN Arachis hypogaea HOM05D000240 ORTHO05D001153 7.2e-11 72.0 122 37.7
arahy.Tifrunner.gnm1.ann1.VG9BQH Arachis hypogaea HOM05D000240 ORTHO05D001153 7.2e-11 72.0 122 37.7
CiPaw.05G071900 Carya illinoinensis HOM05D000240 ORTHO05D001153 7.2e-11 72.0 126 38.1
Duzib132G0039 Durio zibethinus HOM05D000240 ORTHO05D001153 7.2e-11 72.0 259 34.0
Dinv42014 Davidia involucrata HOM05D000240 ORTHO05D001153 9.4e-11 71.6 262 35.1
Gorai.013G033200 Gossypium raimondii HOM05D000240 ORTHO05D001153 9.4e-11 71.6 260 33.5
Lj3g0019992 Lotus japonicus HOM05D000240 ORTHO05D001153 9.4e-11 71.6 123 40.7
Ah.01g018940 Amaranthus hybridus HOM05D000240 ORTHO05D001153 1.2e-10 71.2 83 45.8
Oeu055622.1 Olea europaea HOM05D000240 ORTHO05D001153 1.6e-10 70.9 259 34.7
Rhsim05G0069000 Rhododendron simsii HOM05D000240 ORTHO05D001153 1.6e-10 70.9 270 33.7
Hund00225 Selenicereus undatus HOM05D000240 ORTHO05D001153 1.6e-10 70.9 72 51.4
arahy.Tifrunner.gnm1.ann1.P086Q7 Arachis hypogaea HOM05D000240 ORTHO05D001153 2.1e-10 70.5 111 41.4
Ciclev10027716m.g Citrus clementina HOM05D000240 ORTHO05D001153 2.7e-10 70.1 264 34.8
Nitab4.5_0001317g0090 Nicotiana tabacum HOM05D000240 ORTHO05D001153 2.7e-10 70.1 72 50.0
TPR.G16212 Trifolium pratense HOM05D000240 ORTHO05D001153 2.7e-10 70.1 72 52.8
unitig_747.g21208 Utricularia gibba HOM05D000240 ORTHO05D001153 2.7e-10 70.1 259 33.6
arahy.Tifrunner.gnm1.ann1.538NCA Arachis hypogaea HOM05D000240 ORTHO05D001153 3.6e-10 69.7 72 52.8
Gohir.A13G031200 Gossypium hirsutum HOM05D000240 ORTHO05D001153 3.6e-10 69.7 260 33.1
Psat7g182360 Pisum sativum HOM05D000240 ORTHO05D001153 3.6e-10 69.7 69 55.1
Sopen11g020380 Solanum pennellii HOM05D000240 ORTHO05D001153 3.6e-10 69.7 262 32.8
SGA_v2.0_scaffold32G13206 Striga asiatica HOM05D000240 ORTHO05D001153 3.6e-10 69.7 249 34.5
Ah.01g006090 Amaranthus hybridus HOM05D000240 ORTHO05D001153 4.7e-10 69.3 72 50.0
Ca_20920_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 4.7e-10 69.3 72 51.4
Duzib248G1652 Durio zibethinus HOM05D000240 ORTHO05D001153 4.7e-10 69.3 71 54.9
Nitab4.5_0000589g0030 Nicotiana tabacum HOM05D000240 ORTHO05D001153 4.7e-10 69.3 260 32.3
unitig_8.g3247 Utricularia gibba HOM05D000240 ORTHO05D001153 4.7e-10 69.3 260 35.4
CSS0029478 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001153 6.1e-10 68.9 263 33.8
Lj1g0006393 Lotus japonicus HOM05D000240 ORTHO05D001153 6.1e-10 68.9 121 41.3
Nitab4.5_0005128g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 6.1e-10 68.9 76 47.4
Gohir.D13G029200 Gossypium hirsutum HOM05D000240 ORTHO05D001153 7.9e-10 68.6 260 33.5
Medtr4g071210 Medicago truncatula HOM05D000240 ORTHO05D001153 7.9e-10 68.6 248 33.9
Nitab4.5_0003006g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 7.9e-10 68.6 260 31.9
TWI75G0793 Tripterygium wilfordii HOM05D000240 ORTHO05D001153 7.9e-10 68.6 258 33.3
Gohir.D04G165900 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.0e-09 68.2 71 53.5
Gorai.012G154300 Gossypium raimondii HOM05D000240 ORTHO05D001153 1.0e-09 68.2 71 53.5
Thecc.02G077900 Theobroma cacao HOM05D000240 ORTHO05D001153 1.0e-09 68.2 149 34.9
Atru.chr5.3112 Acer truncatum HOM05D000240 ORTHO05D001153 1.4e-09 67.8 71 53.5
FvH4_2g10080 Fragaria vesca HOM05D000240 ORTHO05D001153 1.4e-09 67.8 120 36.7
FAN20G1397 Fragaria x ananassa HOM05D000240 ORTHO05D001153 1.4e-09 67.8 120 35.0
Glyma.04G009100 Glycine max HOM05D000240 ORTHO05D001153 1.4e-09 67.8 108 38.9
Ca_15343_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 1.8e-09 67.4 254 34.6
Gohir.A01G003700 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.8e-09 67.4 125 37.6
Potri.004G161100 Populus trichocarpa HOM05D000240 ORTHO05D001153 2.3e-09 67.0 265 34.0
ClCG11G004000 Citrullus lanatus HOM05D000240 ORTHO05D001153 3.0e-09 66.6 102 41.2
Gohir.D01G003701 Gossypium hirsutum HOM05D000240 ORTHO05D001153 3.0e-09 66.6 71 52.1
Gorai.002G004600 Gossypium raimondii HOM05D000240 ORTHO05D001153 3.0e-09 66.6 71 52.1
Lalb_Chr01g0002261 Lupinus albus HOM05D000240 ORTHO05D001153 3.0e-09 66.6 74 47.3
Solyc11g044880.3 Solanum lycopersicum HOM05D000240 ORTHO05D001153 3.0e-09 66.6 262 32.4
ClCG02G004660 Citrullus lanatus HOM05D000240 ORTHO05D001153 3.9e-09 66.2 261 33.7
Gohir.A04G123800 Gossypium hirsutum HOM05D000240 ORTHO05D001153 3.9e-09 66.2 68 54.4
HanXRQChr04g0127671 Helianthus annuus HOM05D000240 ORTHO05D001153 3.9e-09 66.2 109 39.4
Peaxi162Scf00684g00222 Petunia axillaris HOM05D000240 ORTHO05D001153 3.9e-09 66.2 66 54.5
FAN27G1574 Fragaria x ananassa HOM05D000240 ORTHO05D001153 5.1e-09 65.9 120 34.2
ECA236G3168 Erigeron canadensis HOM05D000240 ORTHO05D001153 6.7e-09 65.5 109 36.7
Potri.009G122100 Populus trichocarpa HOM05D000240 ORTHO05D001153 6.7e-09 65.5 71 52.1
Hma1.2p1_0851F.1_g228305 Hydrangea macrophylla HOM05D000240 ORTHO05D001153 8.8e-09 65.1 93 43.0
Lsat_1_v5_gn_9_107600 Lactuca sativa HOM05D000240 ORTHO05D001153 8.8e-09 65.1 263 31.2
GSVIVG01024203001 Vitis vinifera HOM05D000240 ORTHO05D001153 8.8e-09 65.1 263 33.5
Manes.11G088000 Manihot esculenta HOM05D000240 ORTHO05D001153 1.1e-08 64.7 260 35.0
Sc08g0000780 Simmondsia chinensis HOM05D000240 ORTHO05D001153 1.1e-08 64.7 61 55.7
Thhalv10000024m.g Eutrema salsugineum HOM05D000240 ORTHO05D001153 1.5e-08 64.3 268 32.8
Lalb_Chr03g0025401 Lupinus albus HOM05D000240 ORTHO05D001153 2.0e-08 63.9 100 38.0
Sed0002918 Sechium edule HOM05D000240 ORTHO05D001153 2.0e-08 63.9 64 53.1
AT2G21380 Arabidopsis thaliana HOM05D000240 ORTHO05D001153 2.6e-08 63.5 264 34.5
CsaV3_7G000280 Cucumis sativus L. HOM05D000240 ORTHO05D001153 2.6e-08 63.5 260 32.7
FAN24G1691 Fragaria x ananassa HOM05D000240 ORTHO05D001153 2.6e-08 63.5 62 53.2
Manes.04G085200 Manihot esculenta HOM05D000240 ORTHO05D001153 2.6e-08 63.5 256 34.8
Sabra09G0094300 Salix brachista HOM05D000240 ORTHO05D001153 2.6e-08 63.5 123 35.0
Nn5g29194 Nelumbo nucifera HOM05D000240 ORTHO05D001153 3.3e-08 63.2 266 32.7
Phvul.009G004100 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 3.3e-08 63.2 262 33.2
Sed0023290 Sechium edule HOM05D000240 ORTHO05D001153 3.3e-08 63.2 97 44.3
MBI05_g10541_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D001153 4.4e-08 62.8 265 32.1
BcaNung06380 Brassica carinata HOM05D000240 ORTHO05D001153 5.7e-08 62.4 268 34.3
C08p41590 Brassica napus HOM05D000240 ORTHO05D001153 5.7e-08 62.4 268 34.3
BolC8t51721H Brassica oleracea HOM05D000240 ORTHO05D001153 5.7e-08 62.4 268 33.6
Solyc10g054080.3 Solanum lycopersicum HOM05D000240 ORTHO05D001153 5.7e-08 62.4 265 29.4
TAR381G1096 Trochodendron aralioides HOM05D000240 ORTHO05D001153 5.7e-08 62.4 82 47.6
BraA09t41217Z Brassica rapa HOM05D000240 ORTHO05D001153 7.4e-08 62.0 268 33.6
MELO3C023342.2 Cucumis melo HOM05D000240 ORTHO05D001153 7.4e-08 62.0 260 33.1
CsaV3_2G015170 Cucumis sativus L. HOM05D000240 ORTHO05D001153 7.4e-08 62.0 260 33.1
ECA240G2203 Erigeron canadensis HOM05D000240 ORTHO05D001153 7.4e-08 62.0 76 50.0
VMungo1127G2069 Vigna mungo HOM05D000240 ORTHO05D001153 7.4e-08 62.0 258 33.3
Hund06267 Selenicereus undatus HOM05D000240 ORTHO05D001153 9.7e-08 61.6 66 48.5
unitig_699.g19884 Utricularia gibba HOM05D000240 ORTHO05D001153 9.7e-08 61.6 244 30.7
VMungo1309G1100 Vigna mungo HOM05D000240 ORTHO05D001153 9.7e-08 61.6 256 33.6
HanXRQChr16g0506381 Helianthus annuus HOM05D000240 ORTHO05D001153 1.7e-07 60.8 108 38.0
PSO541G4974 Papaver somniferum HOM05D000240 ORTHO05D001153 3.7e-07 59.7 66 53.0
PSO675G1230 Papaver somniferum HOM05D000240 ORTHO05D001153 3.7e-07 59.7 66 53.0
Sp4g00550 Schrenkiella parvula HOM05D000240 ORTHO05D001153 3.7e-07 59.7 266 32.7
ATR0661G585 Amborella trichopoda HOM05D000240 ORTHO05D001153 4.8e-07 59.3 67 52.2
Glyma.13G030600 Glycine max HOM05D000240 ORTHO05D001153 1.1e-06 58.2 126 34.1
Sc18g0005290 Simmondsia chinensis HOM05D000240 ORTHO05D001153 1.1e-06 58.2 72 44.4
Carub.0007s0092 Capsella rubella HOM05D000240 ORTHO05D001153 2.4e-06 57.0 262 32.8
Sed0005078 Sechium edule HOM05D000240 ORTHO05D001153 2.4e-06 57.0 258 31.0
Phvul.001G072400 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 4.1e-06 56.2 126 34.1
VMungo0647G0541 Vigna mungo HOM05D000240 ORTHO05D001153 5.3e-06 55.8 126 34.1
AT4G39050 Arabidopsis thaliana HOM05D000240 ORTHO05D001153 7.0e-06 55.5 262 32.4
Glyma.11G112700 Glycine max HOM05D000240 ORTHO05D001153 7.0e-06 55.5 262 32.8


User provided reference genes

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